TomoSeq data search

Data search

Results for MligTC455_31509

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_31509

714

14.87

Mlig455_007271, Mlig455_068304

Neo: -

Age: Up-Down-Up

SHOC2

Mlig455_007271 {REF} {Length: 5846} {Pfam: Leucine rich repeat [PF13855.8, score=200.9]; Leucine Rich repeats (2 copies) [PF12799.9, score=133.4]; Leucine-rich repeat [PF14580.8, score=33.7]; Leucine Rich Repeat [PF00560.35, score=33.0]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=23.5]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=412, Expect=1e-135]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=414, Expect=3e-136]} {Dmel: FBgn0038504, Sur-8, [Score=421, Expect=3e-138]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=371, Expect=2e-120]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=384, Expect=5e-125]} {RNA1509_32204} {RNA1310_3548} {RNA815_1725}

Mlig455_068304 {REF} {Length: 4790} {Pfam: Leucine rich repeat [PF13855.8, score=113.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=73.1]; Leucine Rich Repeat [PF00560.35, score=23.8]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=214, Expect=3e-61]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=216, Expect=6e-62]} {Dmel: FBgn0038504, Sur-8, [Score=231, Expect=2e-67]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=200, Expect=1e-56]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=213, Expect=4e-61]} {RNA1509_27357, RNA1509_32204, RNA1509_7592} {RNA1310_3548, RNA1509_27357, RNA1509_32204, RNA1509_7592} {RNA1509_27357, RNA1509_32204, RNA1509_7592, RNA815_1725}

Cumulative graph for MligTC455_31509

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.248	4.224	0.79907	1.00000
RegionR2	1.019	4.224	0.08581	0.36000
RegionR3	-0.09	4.224	0.84096	1.00000
RegionR4	-0.618	4.224	0.26983	0.57517
RegionR5	-0.636	4.224	0.12175	0.35000
RegionR6	-0.593	4.224	0.18958	0.75558
RegionR7	-0.089	4.224	0.88071	1.00000
RegionR8	0.759	4.224	0.20663	0.80832

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.888	4.224	0.21479	0.95256
RegenerationR2	-0.515	4.224	0.34463	0.77841
RegenerationR3	0.657	4.224	0.26554	0.70034
RegenerationR4	-0.779	4.224	0.19722	0.64226
RegenerationR5	0.398	4.224	0.46443	0.83930
RegenerationR6	0.609	4.224	0.33122	0.67741
RegenerationBL	0.844	4.224	0.21630	0.56239
RegenerationTP	0.142	4.224	0.83561	1.00000

Genes with expression patterns similar to MligTC455_31509

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_31509	714	14.87	Mlig455_007271, Mlig455_068304	Neo: - Age: Up-Down-Up	SHOC2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_007271 {REF} {Length: 5846} {Pfam: Leucine rich repeat [PF13855.8, score=200.9]; Leucine Rich repeats (2 copies) [PF12799.9, score=133.4]; Leucine-rich repeat [PF14580.8, score=33.7]; Leucine Rich Repeat [PF00560.35, score=33.0]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=23.5]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=412, Expect=1e-135]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=414, Expect=3e-136]} {Dmel: FBgn0038504, Sur-8, [Score=421, Expect=3e-138]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=371, Expect=2e-120]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=384, Expect=5e-125]} {RNA1509_32204} {RNA1310_3548} {RNA815_1725} Mlig455_068304 {REF} {Length: 4790} {Pfam: Leucine rich repeat [PF13855.8, score=113.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=73.1]; Leucine Rich Repeat [PF00560.35, score=23.8]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=214, Expect=3e-61]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=216, Expect=6e-62]} {Dmel: FBgn0038504, Sur-8, [Score=231, Expect=2e-67]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=200, Expect=1e-56]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=213, Expect=4e-61]} {RNA1509_27357, RNA1509_32204, RNA1509_7592} {RNA1310_3548, RNA1509_27357, RNA1509_32204, RNA1509_7592} {RNA1509_27357, RNA1509_32204, RNA1509_7592, RNA815_1725}
2.	MligTC455_52299	538	11.21	Mlig455_008028	Neo: - Age: Up-Down-Up Regeneration-upregulated R6: 1.840 Regeneration-enriched R6: 1.840		1.667	-	0.713	-	-	-	0.954	Mlig455_008028 {REF} {Length: 2384} {RNA1509_7088} {RNA1310_7111} {RNA815_2388}
3.	MligTC455_23070	1606	33.46	Mlig455_034639, Mlig455_062635	Neo: - Age: - Region-enriched R7: 1.351/0.00031	EFHD1	0.959	-	-	-	-	-	0.959	Mlig455_034639 {REF} {Length: 3054} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=29.9]; EF hand [PF00036.34, score=28.2]; EF-hand domain [PF13405.8, score=27.8]; EF hand [PF13202.8, score=18.5]} {Human: ENSG00000115468, EFHD1, EF-hand domain family member D1, [Score=114, Expect=2e-30]; ENSG00000142634, EFHD2, EF-hand domain family member D2, [Score=111, Expect=2e-29]} {Mouse: ENSMUSG00000040659, Efhd2, EF hand domain containing 2, [Score=112, Expect=5e-30]; ENSMUSG00000026255, Efhd1, EF hand domain containing 1, [Score=112, Expect=6e-30]} {Dmel: FBgn0032731, Swip-1, Swiprosin-1, [Score=110, Expect=3e-29]} {Celegans: WBGene00012980, efhd-1, EF HanD calcium binding protein, [Score=87.4, Expect=6e-21]} {Smed: dd_Smed_v6_1467_0_1, dd_Smed_v6_1467_0_1, [Score=132, Expect=4e-38]} {RNA1509_32250} {RNA1310_17151} {RNA815_2891} Mlig455_062635 {REF} {Length: 3055} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=29.9]; EF hand [PF00036.34, score=28.2]; EF-hand domain [PF13405.8, score=27.8]; EF hand [PF13202.8, score=18.5]} {Human: ENSG00000115468, EFHD1, EF-hand domain family member D1, [Score=114, Expect=2e-30]; ENSG00000142634, EFHD2, EF-hand domain family member D2, [Score=111, Expect=2e-29]} {Mouse: ENSMUSG00000040659, Efhd2, EF hand domain containing 2, [Score=112, Expect=5e-30]; ENSMUSG00000026255, Efhd1, EF hand domain containing 1, [Score=112, Expect=6e-30]} {Dmel: FBgn0032731, Swip-1, Swiprosin-1, [Score=110, Expect=3e-29]} {Celegans: WBGene00012980, efhd-1, EF HanD calcium binding protein, [Score=87.4, Expect=6e-21]} {Smed: dd_Smed_v6_1467_0_1, dd_Smed_v6_1467_0_1, [Score=132, Expect=4e-38]} {RNA1509_17138, RNA1509_23230, RNA1509_32250, RNA1509_40469, RNA1509_51568, RNA1509_52570, RNA1509_59315} {RNA1310_17151, RNA1509_17138, RNA1509_23230, RNA1509_32250, RNA1509_40469, RNA1509_51568, RNA1509_52570, RNA1509_59315} {RNA1509_17138, RNA1509_23230, RNA1509_32250, RNA1509_40469, RNA1509_51568, RNA1509_52570, RNA1509_59315, RNA815_2891}
4.	MligTC455_28047	378	7.88	Mlig455_031768	Neo: - Age: - Region-enriched R4: 1.504/0.03968		0.959	-	-	-	-	0.959	-	Mlig455_031768 {REF} {Length: 5469} {Pfam: Syndecan domain [PF01034.22, score=36.2]; Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=30.3]; SEA domain [PF01390.22, score=30.1]} {Dmel: FBgn0010415, Sdc, Syndecan, [Score=50.1, Expect=3e-06]} {Smed: dd_Smed_v6_14098_0_1, dd_Smed_v6_14098_0_1, [RH, Score=83.2, Expect=3e-17]} {RNA1509_19683} {RNA1310_24472} {RNA815_5677.1}
5.	MligTC455_25186	892	18.59	Mlig455_011228	Neo: - Age: -	SEPT7	0.952	-	-	-	-	-	0.952	Mlig455_011228 {REF} {Length: 2920} {TRANSSPLICED} {Pfam: Septin [PF00735.20, score=368.5]; 50S ribosome-binding GTPase [PF01926.25, score=32.3]; RsgA GTPase [PF03193.18, score=22.8]; Growth-arrest specific micro-tubule binding [PF13851.8, score=18.8]} {Human: ENSG00000122545, SEPT7, septin 7, [RH, Score=503, Expect=3e-176]} {Mouse: ENSMUSG00000001833, Sept7, septin 7, [RH, Score=503, Expect=2e-176]} {Dmel: FBgn0013726, pnut, peanut, [RH, Score=477, Expect=1e-164]} {Celegans: WBGene00006793, unc-59, [RH, Score=345, Expect=3e-114]} {Smed: dd_Smed_v6_2641_0_1, dd_Smed_v6_2641_0_1, [RH, Score=490, Expect=1e-170]} {RNA1509_11460} {RNA1310_5868, RNA1509_11460} {RNA1509_11460, RNA815_4633}
6.	MligTC455_21264	2714	56.54	Mlig455_001276	Neo: Neoblast, stringent Age: Down-Up-Up, logFC(26M/2M)=0.227 Regeneration-upregulated BL: 1.397 Regeneration-enriched BL: 1.397	HMGB1	0.95	-	-	-	-	-	0.950	Mlig455_001276 {REF} {Length: 1258} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=123.1]; HMG-box domain [PF09011.12, score=117.6]} {Human: ENSG00000189403, HMGB1, high mobility group box 1, [RH, Score=177, Expect=4e-56]} {Mouse: ENSMUSG00000066551, Hmgb1, high mobility group box 1, [RH, Score=178, Expect=2e-56]} {Dmel: FBgn0278608, Dsp1, Dorsal switch protein 1, [Score=207, Expect=6e-66]} {Celegans: WBGene00001972, hmg-1.2, High mobility group protein 1.2, [RH, Score=155, Expect=2e-47]} {Smed: dd_Smed_v6_1331_0_1, dd_Smed_v6_1331_0_1, [Score=221, Expect=1e-72]} {RNA1509_27206, RNA1509_29453, RNA1509_4386} {RNA1310_23719, RNA1509_27206, RNA1509_29453, RNA1509_4386} {RNA1509_27206, RNA1509_29453, RNA1509_4386, RNA815_12466.2}
7.	MligTC455_25664	778	16.21	Mlig455_004739, Mlig455_004839	Neo: - Age: Down-Up-Up, logFC(26M/2M)=-0.375	ANKHD1, ANKHD1-EIF4EBP3	0.95	-	-	-	-	-	0.950	Mlig455_004739 {REF} {Length: 3400} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=187.3]; Ankyrin repeats (3 copies) [PF12796.9, score=152.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=123.6]; Ankyrin repeats (many copies) [PF13637.8, score=91.6]; Ankyrin repeat [PF13606.8, score=89.4]; Ankyrin repeats (many copies) [PF13857.8, score=86.0]; Ankyrin repeat [PF00023.32, score=82.2]; ABC1 atypical kinase-like domain [PF03109.18, score=20.2]} {Human: ENSG00000131503, ANKHD1, ankyrin repeat and KH domain containing 1, [Score=131, Expect=5e-30]; ENSG00000254996, ANKHD1-EIF4EBP3, ANKHD1-EIF4EBP3 readthrough, [Score=130, Expect=7e-30]; ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=130, Expect=1e-29]; ENSG00000197168, NEK5, NIMA related kinase 5, [Score=129, Expect=1e-29]} {Mouse: ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=132, Expect=1e-30]; ENSMUSG00000024483, Ankhd1, ankyrin repeat and KH domain containing 1, [Score=127, Expect=4e-29]; ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=126, Expect=5e-30]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=130, Expect=4e-30]} {Celegans: WBGene00003822, nsy-1, Mitogen-activated protein kinase kinase kinase nsy-1, [Score=118, Expect=9e-27]} {Smed: dd_Smed_v6_11663_0_4, dd_Smed_v6_11663_0_4, [Score=176, Expect=1e-45]} {RNA1509_16775} {RNA1310_7082} {RNA815_556} Mlig455_004839 {REF} {Length: 3566} {Pfam: Protein kinase domain [PF00069.27, score=187.6]; Ankyrin repeats (3 copies) [PF12796.9, score=151.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=124.0]; Ankyrin repeats (many copies) [PF13637.8, score=91.7]; Ankyrin repeat [PF13606.8, score=89.8]; Ankyrin repeats (many copies) [PF13857.8, score=84.7]; Ankyrin repeat [PF00023.32, score=84.3]; ABC1 atypical kinase-like domain [PF03109.18, score=20.7]} {Human: ENSG00000254996, ANKHD1-EIF4EBP3, ANKHD1-EIF4EBP3 readthrough, [Score=132, Expect=1e-30]; ENSG00000131503, ANKHD1, ankyrin repeat and KH domain containing 1, [Score=132, Expect=1e-30]; ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=131, Expect=2e-30]; ENSG00000197168, NEK5, NIMA related kinase 5, [Score=128, Expect=9e-30]} {Mouse: ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=133, Expect=4e-31]; ENSMUSG00000024483, Ankhd1, ankyrin repeat and KH domain containing 1, [Score=129, Expect=8e-30]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=132, Expect=9e-31]} {Celegans: WBGene00003822, nsy-1, Mitogen-activated protein kinase kinase kinase nsy-1, [Score=119, Expect=5e-27]} {Smed: dd_Smed_v6_11663_0_4, dd_Smed_v6_11663_0_4, [Score=179, Expect=9e-47]} {RNA1509_16775} {RNA1310_7082} {RNA815_556}

Berezikov Lab - 2020-2021 © ERIBA