Data search
Results for MligTC455_23258
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_23258 | 1533 | 31.94 | Mlig455_048752 | Neo: - Age: - |
Mlig455_048752 {REF} {Length: 2090} {TRANSSPLICED} {Pfam: Flagella accessory protein C (FlaC) [PF05377.13, score=19.2]; Weak chloroplast movement under blue light [PF05701.13, score=17.4]} {RNA1509_25043, RNA1509_30520, RNA1509_56657} {RNA1310_12993.1, RNA1509_30520, RNA1509_56657} {RNA1509_30520, RNA1509_56657, RNA815_2932.1} |
Cumulative graph for MligTC455_23258
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.943 | 5.193 | 0.28881 | 0.94122 | |
| RegionR2 | -0.133 | 5.193 | 0.70085 | 1.00000 | |
| RegionR3 | -0.113 | 5.193 | 0.69823 | 1.00000 | |
| RegionR4 | 0.222 | 5.193 | 0.50006 | 0.82676 | |
| RegionR5 | 0.097 | 5.193 | 0.71484 | 1.00000 | |
| RegionR6 | -0.1 | 5.193 | 0.73836 | 1.00000 | |
| RegionR7 | 0.281 | 5.193 | 0.44141 | 1.00000 | |
| RegionR8 | 0.689 | 5.193 | 0.12200 | 0.64211 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 0.323 | 5.193 | 0.78275 | 1.00000 | |
| RegenerationR2 | 0.614 | 5.193 | 0.02707 | 0.27198 | |
| RegenerationR3 | 0.244 | 5.193 | 0.43334 | 0.82306 | |
| RegenerationR4 | -0.159 | 5.193 | 0.60947 | 0.91703 | |
| RegenerationR5 | 0.514 | 5.193 | 0.07471 | 0.42757 | |
| RegenerationR6 | 0.667 | 5.193 | 0.03122 | 0.22063 | |
| RegenerationBL | 0.199 | 5.193 | 0.55433 | 0.91050 | |
| RegenerationTP | -0.657 | 5.193 | 0.09939 | 0.49109 |
Genes with expression patterns similar to MligTC455_23258
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_23258 | 1533 | 31.94 | Mlig455_048752 | Neo: - Age: - |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_048752 {REF} {Length: 2090} {TRANSSPLICED} {Pfam: Flagella accessory protein C (FlaC) [PF05377.13, score=19.2]; Weak chloroplast movement under blue light [PF05701.13, score=17.4]} {RNA1509_25043, RNA1509_30520, RNA1509_56657} {RNA1310_12993.1, RNA1509_30520, RNA1509_56657} {RNA1509_30520, RNA1509_56657, RNA815_2932.1} | |
| 2. | MligTC455_54148 | 3035 | 63.24 | Mlig455_029636 | Neo: - |
SLC38A9 | 1.731 | - | - | - | 0.770 | 0.961 | - | Mlig455_029636 {REF} {Length: 2581} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=112.8]; Tryptophan/tyrosine permease family [PF03222.15, score=23.5]} {Human: ENSG00000177058, SLC38A9, solute carrier family 38 member 9, [Score=320, Expect=2e-100]} {Mouse: ENSMUSG00000047789, Slc38a9, solute carrier family 38, member 9, [Score=355, Expect=5e-114]} {Celegans: WBGene00008774, F13H10.3, Sodium-coupled neutral amino acid transporter 9 homolog, [Score=374, Expect=2e-121]} {Smed: dd_Smed_v6_18126_0_2, dd_Smed_v6_18126_0_2, [Score=420, Expect=3e-139]} {RNA1509_20733} {RNA1310_17999} {RNA815_3192.1} |
| 3. | MligTC455_41787 | 675 | 14.06 | Mlig455_052113 | Neo: - |
UBE2J2 | 0.969 | - | - | - | 0.969 | - | - | Mlig455_052113 {REF} {Length: 1701} {TRANSSPLICED} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=71.9]; Nuclear distribution C domain [PF16273.7, score=19.1]} {Human: ENSG00000160087, UBE2J2, ubiquitin conjugating enzyme E2 J2, [RH, Score=271, Expect=3e-91]} {Mouse: ENSMUSG00000023286, Ube2j2, ubiquitin-conjugating enzyme E2J 2, [RH, Score=268, Expect=3e-90]} {Dmel: FBgn0038515, CG5823, [RH, Score=271, Expect=2e-91]} {Celegans: WBGene00022450, ubc-26, UBiquitin Conjugating enzyme, [RH, Score=235, Expect=2e-78]} {Smed: dd_Smed_v6_2733_0_1, dd_Smed_v6_2733_0_1, [RH, Score=214, Expect=9e-70]} {RNA1509_15113} {RNA1310_17911} {RNA815_23396.1} |
| 4. | MligTC455_25210 | 915 | 19.07 | Mlig455_036995 | Neo: Int S/G2/M Age: logFC(26M/2M)=0.268 |
PUM2 | 0.96 | - | - | - | 0.960 | - | - | Mlig455_036995 {REF} {Length: 5241} {TRANSSPLICED} {Pfam: Pumilio-family RNA binding repeat [PF00806.21, score=284.7]; CPL (NUC119) domain [PF08144.13, score=20.0]} {Human: ENSG00000055917, PUM2, pumilio RNA binding family member 2, [RH, Score=538, Expect=4e-176]; ENSG00000134644, PUM1, pumilio RNA binding family member 1, [RH, Score=529, Expect=3e-173]} {Mouse: ENSMUSG00000020594, Pum2, pumilio RNA-binding family member 2, [RH, Score=538, Expect=3e-176]; ENSMUSG00000106966, Pum1, pumilio RNA-binding family member 1, [RH, Score=530, Expect=2e-173]; ENSMUSG00000028580, Pum1, pumilio RNA-binding family member 1, [RH, Score=530, Expect=2e-173]} {Dmel: FBgn0003165, pum, pumilio, [RH, Score=514, Expect=5e-162]} {Celegans: WBGene00004245, puf-9, PUF (Pumilio/FBF) domain-containing, [RH, Score=396, Expect=1e-125]} {Smed: dd_Smed_v6_1677_0_1, dd_Smed_v6_1677_0_1, [Score=524, Expect=4e-172]} {RNA1509_51688, RNA1509_8552} {RNA1310_4745.1, RNA1509_51688, RNA1509_8552} {RNA1509_51688, RNA1509_8552, RNA815_8885} |
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