M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23264

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23264 2815 58.64 Mlig455_069743

Neo: -

Age: -

 RAD23B Mlig455_069743 {REF} {Length: 2990} {Pfam: UBA/TS-N domain [PF00627.33, score=91.6]; Ubiquitin family [PF00240.25, score=69.5]; XPC-binding domain [PF09280.13, score=69.3]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=23.0]} {Human: ENSG00000119318, RAD23B, RAD23 homolog B, nucleotide excision repair protein, [RH, Score=250, Expect=2e-79]; ENSG00000179262, RAD23A, RAD23 homolog A, nucleotide excision repair protein, [RH, Score=243, Expect=2e-77]} {Mouse: ENSMUSG00000003813, Rad23a, RAD23 homolog A, nucleotide excision repair protein, [RH, Score=248, Expect=2e-79]; ENSMUSG00000028426, Rad23b, RAD23 homolog B, nucleotide excision repair protein, [RH, Score=239, Expect=1e-75]} {Dmel: FBgn0026777, Rad23, [RH, Score=200, Expect=2e-60]} {Celegans: WBGene00013924, rad-23, [RH, Score=157, Expect=6e-45]} {Smed: dd_Smed_v6_3017_0_1, dd_Smed_v6_3017_0_1, [RH, Score=258, Expect=7e-84]} {RNA1509_11759, RNA1509_2540, RNA1509_28784} {RNA1310_10730.1, RNA1509_11759, RNA1509_2540, RNA1509_28784} {RNA1509_11759, RNA1509_2540, RNA1509_28784, RNA815_3907.1}

Cumulative graph for MligTC455_23264

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.501 6.074 0.36453 1.00000
RegionR2 -0.669 6.074 0.01687 0.13793
RegionR3 0.138 6.074 0.52853 1.00000
RegionR4 0.834 6.074 0.00104 0.01073
RegionR5 0.585 6.074 0.00347 0.02629
RegionR6 0.283 6.074 0.20170 0.77426
RegionR7 -0.331 6.074 0.21980 0.84028
RegionR8 -0.339 6.074 0.28252 0.90913

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.668 6.074 0.10983 0.83433
RegenerationR2 0.186 6.074 0.47341 0.85917
RegenerationR3 -0.214 6.074 0.42723 0.81934
RegenerationR4 -0.402 6.074 0.13719 0.55769
RegenerationR5 -0.15 6.074 0.55283 0.88712
RegenerationR6 0.208 6.074 0.42787 0.75688
RegenerationBL 0.073 6.074 0.80006 1.00000
RegenerationTP 0.02 6.074 0.95172 1.00000


Genes with expression patterns similar to MligTC455_23264

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23264 2815 58.64 Mlig455_069743

Neo: -

Age: -

 RAD23B 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_069743 {REF} {Length: 2990} {Pfam: UBA/TS-N domain [PF00627.33, score=91.6]; Ubiquitin family [PF00240.25, score=69.5]; XPC-binding domain [PF09280.13, score=69.3]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=23.0]} {Human: ENSG00000119318, RAD23B, RAD23 homolog B, nucleotide excision repair protein, [RH, Score=250, Expect=2e-79]; ENSG00000179262, RAD23A, RAD23 homolog A, nucleotide excision repair protein, [RH, Score=243, Expect=2e-77]} {Mouse: ENSMUSG00000003813, Rad23a, RAD23 homolog A, nucleotide excision repair protein, [RH, Score=248, Expect=2e-79]; ENSMUSG00000028426, Rad23b, RAD23 homolog B, nucleotide excision repair protein, [RH, Score=239, Expect=1e-75]} {Dmel: FBgn0026777, Rad23, [RH, Score=200, Expect=2e-60]} {Celegans: WBGene00013924, rad-23, [RH, Score=157, Expect=6e-45]} {Smed: dd_Smed_v6_3017_0_1, dd_Smed_v6_3017_0_1, [RH, Score=258, Expect=7e-84]} {RNA1509_11759, RNA1509_2540, RNA1509_28784} {RNA1310_10730.1, RNA1509_11759, RNA1509_2540, RNA1509_28784} {RNA1509_11759, RNA1509_2540, RNA1509_28784, RNA815_3907.1}
2. MligTC455_23263 2910 60.62 Mlig455_048754

Neo: -

Age: -

 RAD23A 5.82 0.992 0.978 0.995 0.990 0.989 0.876 Mlig455_048754 {REF} {Length: 1703} {Pfam: UBA/TS-N domain [PF00627.33, score=78.5]; XPC-binding domain [PF09280.13, score=70.5]} {Human: ENSG00000179262, RAD23A, RAD23 homolog A, nucleotide excision repair protein, [Score=166, Expect=6e-50]; ENSG00000119318, RAD23B, RAD23 homolog B, nucleotide excision repair protein, [Score=160, Expect=9e-48]} {Mouse: ENSMUSG00000003813, Rad23a, RAD23 homolog A, nucleotide excision repair protein, [Score=166, Expect=5e-50]} {Dmel: FBgn0026777, Rad23, [Score=139, Expect=9e-40]} {Celegans: WBGene00013924, rad-23, [Score=115, Expect=6e-31]} {Smed: dd_Smed_v6_3017_0_1, dd_Smed_v6_3017_0_1, [Score=175, Expect=5e-54]} {RNA1509_11759, RNA1509_3909} {RNA1310_10730.1, RNA1509_3909} {RNA1509_3909, RNA815_3907.1}
3. MligTC455_47651 2087 43.48 Mlig455_013872, Mlig455_057738

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.433/0.00043

 NUP98 0.976 - - - - 0.976 -

Mlig455_013872 {REF} {Length: 3541} {Human: ENSG00000110713, NUP98, nucleoporin 98, [RH, Score=106, Expect=1e-22]} {Mouse: ENSMUSG00000063550, Nup98, nucleoporin 98, [RH, Score=103, Expect=4e-22]} {Dmel: FBgn0039120, Nup98-96, Nucleoporin 98-96kD, [Score=102, Expect=1e-21]} {Celegans: WBGene00003796, npp-10, Nuclear pore complex protein Nup98-Nup96 Nuclear pore complex protein Nup98 Nuclear pore complex protein Nup96, [RH, Score=118, Expect=6e-27]} {Smed: dd_Smed_v6_5347_0_1, dd_Smed_v6_5347_0_1, [Score=71.6, Expect=2e-12]} {RNA1509_14875} {RNA1310_4705} {RNA815_4964}

Mlig455_057738 {REF} {Length: 5155} {Human: ENSG00000110713, NUP98, nucleoporin 98, [RH, Score=106, Expect=1e-22]} {Mouse: ENSMUSG00000063550, Nup98, nucleoporin 98, [RH, Score=103, Expect=3e-22]} {Dmel: FBgn0039120, Nup98-96, Nucleoporin 98-96kD, [Score=102, Expect=1e-21]} {Celegans: WBGene00003796, npp-10, Nuclear pore complex protein Nup98-Nup96 Nuclear pore complex protein Nup98 Nuclear pore complex protein Nup96, [RH, Score=118, Expect=5e-27]} {Smed: dd_Smed_v6_5347_0_1, dd_Smed_v6_5347_0_1, [Score=70.9, Expect=2e-12]} {RNA1509_14875} {RNA1310_4705, RNA1509_14875} {RNA1509_14875, RNA815_4964}
4. MligTC455_43379 191 3.98 Mlig455_033206

Neo: -

Age: Down-Up-Down

 ECI1 0.963 - - - - 0.963 - Mlig455_033206 {REF} {Length: 1857} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=132.2]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=46.5]} {Human: ENSG00000167969, ECI1, enoyl-CoA delta isomerase 1, [RH, Score=159, Expect=2e-46]} {Mouse: ENSMUSG00000024132, Eci1, enoyl-Coenzyme A delta isomerase 1, [RH, Score=171, Expect=1e-51]} {Dmel: FBgn0032160, CG4598, [RH, Score=166, Expect=6e-50]} {RNA1509_33057, RNA1509_57162, RNA1509_59982} {RNA1310_26151, RNA1509_33057, RNA1509_57162} {RNA1509_33057, RNA1509_57162, RNA815_13315}
5. MligTC455_24200 669 13.95 Mlig455_015201, Mlig455_027163

Neo: -

Age: -

 RAPGEF1 0.957 - - - - 0.957 -

Mlig455_015201 {REF} {Length: 3738} {TRANSSPLICED} {Pfam: RasGEF domain [PF00617.21, score=84.1]; RasGEF N-terminal motif [PF00618.22, score=23.8]} {Human: ENSG00000107263, RAPGEF1, Rap guanine nucleotide exchange factor 1, [Score=161, Expect=7e-40]} {Mouse: ENSMUSG00000039844, Rapgef1, Rap guanine nucleotide exchange factor (GEF) 1, [Score=164, Expect=1e-40]} {Dmel: FBgn0085421, Epac, Exchange protein directly activated by cAMP, [Score=60.5, Expect=6e-09]} {Celegans: WBGene00021320, Y34B4A.4, [RH, Score=171, Expect=2e-43]} {Smed: dd_Smed_v6_6136_0_1, dd_Smed_v6_6136_0_1, [RH, Score=107, Expect=2e-23]} {RNA1509_36789, RNA1509_47360} {RNA1310_2891.1, RNA1509_36789, RNA1509_47360} {RNA1509_36789, RNA1509_47360, RNA815_3191}

Mlig455_027163 {REF} {Length: 3767} {Pfam: RasGEF domain [PF00617.21, score=84.2]; RasGEF N-terminal motif [PF00618.22, score=23.8]} {Human: ENSG00000107263, RAPGEF1, Rap guanine nucleotide exchange factor 1, [Score=161, Expect=8e-40]} {Mouse: ENSMUSG00000039844, Rapgef1, Rap guanine nucleotide exchange factor (GEF) 1, [Score=164, Expect=1e-40]} {Dmel: FBgn0085421, Epac, Exchange protein directly activated by cAMP, [Score=60.5, Expect=7e-09]} {Celegans: WBGene00021320, Y34B4A.4, [RH, Score=172, Expect=5e-44]} {Smed: dd_Smed_v6_6136_0_1, dd_Smed_v6_6136_0_1, [RH, Score=110, Expect=2e-24]} {RNA1509_47360} {RNA1310_2891.1} {RNA815_3191}
6. MligTC455_31156 1165 24.27 Mlig455_044137

Neo: -

Age: -

Region-enriched R4: 1.380/0.03526
Region-enriched R5: 1.037/0.03359

 RANBP2 0.953 - - 0.953 - - - Mlig455_044137 {REF} {Length: 8522} {TRANSSPLICED} {Pfam: RanBP1 domain [PF00638.20, score=354.8]; Tetratricopeptide repeat [PF14559.8, score=24.5]; Tetratricopeptide repeat [PF13432.8, score=21.2]} {Human: ENSG00000153201, RANBP2, RAN binding protein 2, [Score=162, Expect=8e-39]} {Mouse: ENSMUSG00000003226, Ranbp2, RAN binding protein 2, [Score=172, Expect=2e-42]} {Dmel: FBgn0039302, Nup358, Nucleoporin 358kD, [RH, Score=260, Expect=5e-69]} {Celegans: WBGene00003795, npp-9, Nuclear Pore complex Protein, [RH, Score=252, Expect=4e-69]} {Smed: dd_Smed_v6_2979_0_1, dd_Smed_v6_2979_0_1, [RH, Score=144, Expect=4e-37]} {RNA1509_5818} {RNA1310_199.1, RNA1509_5818} {RNA1509_5818, RNA815_4843}
7. MligTC455_44946 83 1.73 Mlig455_046261, Mlig455_066038

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R4: 5.905/0.02618

 POLQ, PRR9 0.952 - - - - 0.952 -

Mlig455_046261 {REF} {Length: 9223} {TRANSSPLICED} {Pfam: DNA polymerase family A [PF00476.22, score=307.8]; Helicase conserved C-terminal domain [PF00271.33, score=41.2]; DEAD/DEAH box helicase [PF00270.31, score=22.4]} {Human: ENSG00000051341, POLQ, DNA polymerase theta, [RH, Score=610, Expect=5e-178]} {Mouse: ENSMUSG00000034206, Polq, polymerase (DNA directed), theta, [RH, Score=613, Expect=2e-179]} {Dmel: FBgn0002905, mus308, mutagen-sensitive 308, [RH, Score=575, Expect=7e-169]} {Celegans: WBGene00020964, polq-1, DNA polymerase theta, [RH, Score=308, Expect=3e-84]} {Smed: dd_Smed_v6_51730_0_3, dd_Smed_v6_51730_0_3, [RH, Score=253, Expect=8e-76]} {RNA1509_38802} {RNA1310_1092} {RNA815_20127}

Mlig455_066038 {REF} {Length: 1082} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=42.4, Expect=1e-05]} {RNA1310_62396}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA