M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23349

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23349 679 14.15 Mlig455_001165, Mlig455_001325

Neo: -

Age: -

 TANGO6

Mlig455_001165 {REF} {Length: 6816} {Pfam: Required for nuclear transport of RNA pol II C-terminus 1 [PF10363.11, score=52.6]; SAP domain [PF02037.29, score=33.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=30.8]; HEAT repeat [PF02985.24, score=20.4]} {Human: ENSG00000103047, TANGO6, transport and golgi organization 6 homolog, [RH, Score=96.7, Expect=4e-19]} {Mouse: ENSMUSG00000041949, Tango6, transport and golgi organization 6, [Score=80.5, Expect=2e-14]} {Celegans: WBGene00011806, ekl-6, [Score=63.5, Expect=2e-09]} {Smed: dd_Smed_v6_7512_0_1, dd_Smed_v6_7512_0_1, [Score=51.6, Expect=6e-06]} {RNA1509_49696} {RNA1310_5141} {RNA815_5744}

Mlig455_001325 {REF} {Length: 5557} {TRANSSPLICED} {Pfam: Required for nuclear transport of RNA pol II C-terminus 1 [PF10363.11, score=54.5]; HEAT repeat [PF02985.24, score=21.8]} {Human: ENSG00000103047, TANGO6, transport and golgi organization 6 homolog, [RH, Score=96.7, Expect=2e-19]} {Mouse: ENSMUSG00000041949, Tango6, transport and golgi organization 6, [RH, Score=82.4, Expect=4e-15]} {Celegans: WBGene00011806, ekl-6, [RH, Score=64.7, Expect=5e-10]} {Smed: dd_Smed_v6_7512_0_1, dd_Smed_v6_7512_0_1, [Score=50.8, Expect=6e-06]} {RNA1509_49696} {RNA1310_5141} {RNA815_2736}

Cumulative graph for MligTC455_23349

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.575 4.167 0.63335 1.00000
RegionR2 1.237 4.167 0.01086 0.10597
RegionR3 0.334 4.167 0.43305 0.95170
RegionR4 0.487 4.167 0.31789 0.63409
RegionR5 -0.268 4.167 0.56089 0.92041
RegionR6 0.257 4.167 0.55158 1.00000
RegionR7 0.252 4.167 0.65680 1.00000
RegionR8 -2.875 4.167 0.01931 0.26990

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.638 4.167 0.67487 1.00000
RegenerationR2 -0.255 4.167 0.45857 0.85162
RegenerationR3 -0.084 4.167 0.83602 0.99259
RegenerationR4 -0.437 4.167 0.30717 0.74836
RegenerationR5 0.377 4.167 0.34325 0.75985
RegenerationR6 0.129 4.167 0.75837 0.95612
RegenerationBL 0.837 4.167 0.21145 0.55522
RegenerationTP 1.188 4.167 0.16572 0.59625


Genes with expression patterns similar to MligTC455_23349

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23349 679 14.15 Mlig455_001165, Mlig455_001325

Neo: -

Age: -

 TANGO6 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_001165 {REF} {Length: 6816} {Pfam: Required for nuclear transport of RNA pol II C-terminus 1 [PF10363.11, score=52.6]; SAP domain [PF02037.29, score=33.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=30.8]; HEAT repeat [PF02985.24, score=20.4]} {Human: ENSG00000103047, TANGO6, transport and golgi organization 6 homolog, [RH, Score=96.7, Expect=4e-19]} {Mouse: ENSMUSG00000041949, Tango6, transport and golgi organization 6, [Score=80.5, Expect=2e-14]} {Celegans: WBGene00011806, ekl-6, [Score=63.5, Expect=2e-09]} {Smed: dd_Smed_v6_7512_0_1, dd_Smed_v6_7512_0_1, [Score=51.6, Expect=6e-06]} {RNA1509_49696} {RNA1310_5141} {RNA815_5744}

Mlig455_001325 {REF} {Length: 5557} {TRANSSPLICED} {Pfam: Required for nuclear transport of RNA pol II C-terminus 1 [PF10363.11, score=54.5]; HEAT repeat [PF02985.24, score=21.8]} {Human: ENSG00000103047, TANGO6, transport and golgi organization 6 homolog, [RH, Score=96.7, Expect=2e-19]} {Mouse: ENSMUSG00000041949, Tango6, transport and golgi organization 6, [RH, Score=82.4, Expect=4e-15]} {Celegans: WBGene00011806, ekl-6, [RH, Score=64.7, Expect=5e-10]} {Smed: dd_Smed_v6_7512_0_1, dd_Smed_v6_7512_0_1, [Score=50.8, Expect=6e-06]} {RNA1509_49696} {RNA1310_5141} {RNA815_2736}
2. MligTC455_23350 404 8.43 Mlig455_070578

Neo: -

Age: -

 TANGO6 4.419 0.856 - 0.903 0.778 0.916 0.966 Mlig455_070578 {REF} {Length: 5457} {TRANSSPLICED} {Pfam: Required for nuclear transport of RNA pol II C-terminus 1 [PF10363.11, score=54.6]; HEAT repeat [PF02985.24, score=21.8]; HEAT repeats [PF13646.8, score=19.2]} {Human: ENSG00000103047, TANGO6, transport and golgi organization 6 homolog, [Score=87.4, Expect=1e-16]} {Mouse: ENSMUSG00000041949, Tango6, transport and golgi organization 6, [RH, Score=71.2, Expect=5e-12]} {Celegans: WBGene00011806, ekl-6, [RH, Score=62.4, Expect=3e-09]} {Smed: dd_Smed_v6_7512_0_1, dd_Smed_v6_7512_0_1, [RH, Score=53.1, Expect=1e-06]} {RNA1509_12450} {RNA1310_5141} {RNA815_5744}
3. MligTC455_49477 647 13.47 Mlig455_057155

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.602

 1.747 - - - 0.789 - 0.958 Mlig455_057155 {REF} {Length: 1603} {Pfam: CD36 family [PF01130.23, score=35.1]} {RNA1509_12751} {RNA1310_21707.1} {RNA815_6814}
4. MligTC455_49101 4028 83.91 Mlig455_051134, Mlig455_051210

Neo: -

Age: -

 NME7 1.681 - - 0.727 0.954 - -

Mlig455_051134 {REF} {Length: 1473} {TRANSSPLICED} {Pfam: Nucleoside diphosphate kinase [PF00334.21, score=232.3]; DUF1126 PH-like domain [PF06565.14, score=19.2]} {Human: ENSG00000143156, NME7, NME/NM23 family member 7, [RH, Score=456, Expect=1e-160]} {Mouse: ENSMUSG00000026575, Nme7, NME/NM23 family member 7, [RH, Score=456, Expect=3e-160]} {Dmel: FBgn0028997, nmdyn-D7, [RH, Score=249, Expect=1e-79]} {Smed: dd_Smed_v6_10129_0_1, dd_Smed_v6_10129_0_1, [RH, Score=427, Expect=2e-149]} {RNA1509_6434} {RNA1310_4930.1} {RNA815_1503.1}

Mlig455_051210 {REF} {Length: 1473} {TRANSSPLICED} {Pfam: Nucleoside diphosphate kinase [PF00334.21, score=231.5]; DUF1126 PH-like domain [PF06565.14, score=19.1]} {Human: ENSG00000143156, NME7, NME/NM23 family member 7, [RH, Score=455, Expect=4e-160]} {Mouse: ENSMUSG00000026575, Nme7, NME/NM23 family member 7, [RH, Score=452, Expect=5e-159]} {Dmel: FBgn0028997, nmdyn-D7, [RH, Score=250, Expect=7e-80]} {Smed: dd_Smed_v6_10129_0_1, dd_Smed_v6_10129_0_1, [RH, Score=427, Expect=2e-149]} {RNA1509_6434} {RNA1310_4930.1, RNA1509_6434} {RNA1509_6434, RNA815_1503.1}
5. MligTC455_20551 756 15.76 Mlig455_028476, Mlig455_028500

Neo: -

Age: -

 HNRNPF 0.954 - - - 0.954 - -

Mlig455_028476 {REF} {Length: 3704} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=39.1]} {Human: ENSG00000169813, HNRNPF, heterogeneous nuclear ribonucleoprotein F, [Score=144, Expect=6e-39]; ENSG00000169045, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [Score=141, Expect=8e-40]; ENSG00000284254, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [Score=139, Expect=5e-37]; ENSG00000126945, HNRNPH2, heterogeneous nuclear ribonucleoprotein H2, [Score=137, Expect=7e-36]} {Mouse: ENSMUSG00000042079, Hnrnpf, heterogeneous nuclear ribonucleoprotein F, [Score=147, Expect=2e-42]} {Dmel: FBgn0259139, glo, glorund, [Score=125, Expect=3e-31]} {Celegans: WBGene00006367, sym-2, RNA-binding protein sym-2, [Score=103, Expect=5e-24]} {Smed: dd_Smed_v6_2383_0_7, dd_Smed_v6_2383_0_7, [RH, Score=125, Expect=3e-34]} {RNA1509_36037, RNA1509_48337} {RNA1310_29717.1, RNA1509_36037, RNA1509_48337} {RNA1509_36037, RNA1509_48337, RNA815_16389}

Mlig455_028500 {REF} {Length: 3749} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=37.4]} {Human: ENSG00000169813, HNRNPF, heterogeneous nuclear ribonucleoprotein F, [Score=145, Expect=4e-39]; ENSG00000169045, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [Score=141, Expect=8e-40]; ENSG00000284254, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [Score=140, Expect=3e-37]} {Mouse: ENSMUSG00000042079, Hnrnpf, heterogeneous nuclear ribonucleoprotein F, [Score=148, Expect=1e-42]} {Dmel: FBgn0259139, glo, glorund, [RH, Score=126, Expect=9e-32]} {Celegans: WBGene00006367, sym-2, RNA-binding protein sym-2, [Score=105, Expect=1e-24]} {Smed: dd_Smed_v6_2383_0_7, dd_Smed_v6_2383_0_7, [RH, Score=125, Expect=2e-34]} {RNA1509_48243, RNA1509_48337, RNA1509_57611} {RNA1310_29717.1, RNA1509_48243, RNA1509_57611} {RNA1509_48243, RNA1509_57611, RNA815_16389}
6. MligTC455_41424 181 3.77 Mlig455_018196

Neo: -

Age: -

 BBS4 0.952 - - - - - 0.952 Mlig455_018196 {REF} {Length: 2934} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF07719.19, score=132.0]; Tetratricopeptide repeat [PF00515.30, score=117.7]; Tetratricopeptide repeat [PF13181.8, score=99.9]; TPR repeat [PF13414.8, score=73.7]; Tetratricopeptide repeat [PF14559.8, score=56.0]; Tetratricopeptide repeat [PF13432.8, score=55.0]; Tetratricopeptide repeat [PF13371.8, score=54.8]; Tetratricopeptide repeat [PF13428.8, score=50.2]; Tetratricopeptide repeat [PF13424.8, score=50.0]; Anaphase-promoting complex, cyclosome, subunit 3 [PF12895.9, score=49.8]; Tetratricopeptide repeat [PF13176.8, score=46.4]; Tetratricopeptide repeat [PF13431.8, score=40.4]; Tetratricopeptide repeat [PF13174.8, score=33.5]; Coatomer epsilon subunit [PF04733.16, score=22.6]; Bacterial type III secretion protein (HrpB1_HrpK) [PF09613.12, score=18.8]} {Human: ENSG00000140463, BBS4, Bardet-Biedl syndrome 4, [RH, Score=496, Expect=6e-171]} {Mouse: ENSMUSG00000025235, Bbs4, Bardet-Biedl syndrome 4 (human), [RH, Score=492, Expect=1e-169]} {Dmel: FBgn0033578, BBS4, Bardet-Biedl syndrome 4, [RH, Score=252, Expect=5e-77]} {Celegans: WBGene00043992, bbs-4, Bardet-Biedl syndrome 4 protein homolog, [RH, Score=207, Expect=2e-60]} {Smed: dd_Smed_v6_11370_0_1, dd_Smed_v6_11370_0_1, [RH, Score=446, Expect=3e-152]} {RNA1509_10669, RNA1509_53697, RNA1509_59346} {RNA1310_19623.1, RNA1509_53697, RNA1509_59346} {RNA1509_53697, RNA1509_59346, RNA815_1541.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA