M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23413

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23413 38 0.79 Mlig455_020722

Neo: -

Age: Up-Down-Down

 Mlig455_020722 {REF} {Length: 3316} {TRANSSPLICED} {RNA1509_28642} {RNA1310_14764} {RNA815_31000}

Cumulative graph for MligTC455_23413

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.087 1.241 0.99960 1.00000
RegionR2 1.136 1.241 0.43693 0.82661
RegionR3 1.227 1.241 0.35492 0.89032
RegionR4 1.367 1.241 0.30381 0.61710
RegionR5 0.018 1.241 0.78435 1.00000
RegionR6 0.808 1.241 0.53114 1.00000
RegionR7 1.368 1.241 0.42065 1.00000
RegionR8 -2.838 1.241 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.34 1.241 0.99996 1.00000
RegenerationR2 0.274 1.241 0.75839 0.97606
RegenerationR3 -0.881 1.241 0.41912 0.81422
RegenerationR4 -0.035 1.241 0.96735 1.00000
RegenerationR5 1.016 1.241 0.31799 0.74179
RegenerationR6 0.229 1.241 0.83879 0.99513
RegenerationBL 0.669 1.241 0.66723 1.00000
RegenerationTP 1.509 1.241 0.51626 0.91162


Genes with expression patterns similar to MligTC455_23413

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23413 38 0.79 Mlig455_020722

Neo: -

Age: Up-Down-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_020722 {REF} {Length: 3316} {TRANSSPLICED} {RNA1509_28642} {RNA1310_14764} {RNA815_31000}
2. MligTC455_27938 137 2.85 Mlig455_033961

Neo: -

Age: -

 1.768 - 0.957 - - - 0.811 Mlig455_033961 {REF} {Length: 3296} {Pfam: Glycine rich protein [PF12810.9, score=20.4]} {RNA1310_28736.1} {RNA815_45605}
3. MligTC455_28828 75 1.56 Mlig455_025597, Mlig455_032280, Mlig455_052189, Mlig455_052896

Neo: -

Age: -

 0.973 - - 0.973 - - -

Mlig455_025597 {REF} {Length: 976} {NoTransDecoderORF} {RNA1509_34915} {RNA1310_8956.2} {RNA815_41033.2}

Mlig455_032280 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_51837} {RNA1310_8956.1} {RNA815_41033.1}

Mlig455_052189 {REF} {Length: 984} {NoTransDecoderORF} {RNA1509_51837} {RNA1310_8956.2} {RNA815_41033.2}

Mlig455_052896 {REF} {Length: 978} {NoTransDecoderORF} {RNA1509_34915} {RNA1310_8956.2} {RNA815_41033.2}
4. MligTC455_48488 142 2.97 Mlig455_019762

Neo: -

Age: Down-Up-Down

Region-enriched R5: 2.450/0.03622

 TBC1D12 0.971 - - - - 0.971 - Mlig455_019762 {REF} {Length: 3903} {TRANSSPLICED} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=150.6]} {Human: ENSG00000108239, TBC1D12, TBC1 domain family member 12, [RH, Score=313, Expect=2e-96]; ENSG00000132405, TBC1D14, TBC1 domain family member 14, [RH, Score=312, Expect=7e-97]} {Mouse: ENSMUSG00000048720, Tbc1d12, TBC1D12: TBC1 domain family, member 12, [RH, Score=311, Expect=8e-97]; ENSMUSG00000029192, Tbc1d14, TBC1 domain family, member 14, [RH, Score=308, Expect=3e-95]} {Dmel: FBgn0035879, GAPcenA, GTPase activating protein and centrosome-associated, [Score=99.0, Expect=4e-21]} {Celegans: WBGene00044061, tbc-12, TBC (Tre-2/Bub2/Cdc16) domain family, [RH, Score=266, Expect=8e-81]} {Smed: dd_Smed_v6_7827_0_1, dd_Smed_v6_7827_0_1, [RH, Score=261, Expect=1e-78]} {RNA1509_49497} {RNA1310_16549, RNA1509_49497} {RNA1509_49497, RNA815_3936.1}
5. MligTC455_48298 55 1.14 Mlig455_067985

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_067985 {REF} {Length: 1658} {TRANSSPLICED} {Pfam: Centrosomin N-terminal motif 1 [PF07989.13, score=19.1]} {RNA1509_50908} {RNA1310_7799.1} {RNA815_38707}
6. MligTC455_50987 42 0.89 Mlig455_043099

Neo: -

Age: -

 0.966 - - - - - 0.966 Mlig455_043099 {REF} {Length: 1440} {NoTransDecoderORF} {RNA1509_22461} {RNA1310_34017} {RNA815_1110}
7. MligTC455_25403 79 1.66 Mlig455_036259, Mlig455_040819

Neo: -

Age: Up-Down-Up

 GVQW3 0.959 - - - - 0.959 -

Mlig455_036259 {REF} {Length: 1703} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=38.6]; Homeodomain-like domain [PF13565.8, score=30.1]; HTH domain in Mos1 transposase [PF17906.3, score=25.3]; Winged helix-turn helix [PF13551.8, score=18.5]} {Human: ENSG00000179240, GVQW3, GVQW motif containing 3, [Score=56.2, Expect=1e-08]} {RNA1509_55432} {RNA1310_7362.1} {RNA815_6705.1}

Mlig455_040819 {REF} {Length: 1465} {Pfam: Putative DNA-binding domain [PF04326.16, score=33.6]} {RNA1509_47755} {RNA1310_37975} {RNA815_40947}
8. MligTC455_14680 11 0.23 Mlig455_038726

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_038726 {REF} {Length: 1588}
9. MligTC455_53342 248 5.17 Mlig455_013412

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.470

Region-enriched R4: 4.103/0.02698

 URGCP 0.954 - - - - 0.954 - Mlig455_013412 {REF} {Length: 6115} {Pfam: Dynamin family [PF00350.25, score=26.7]; Root hair defective 3 GTP-binding protein (RHD3) [PF05879.14, score=18.4]} {Human: ENSG00000106608, URGCP, upregulator of cell proliferation, [Score=129, Expect=1e-29]} {Mouse: ENSMUSG00000078606, Gm4070, predicted gene 4070, [RH, Score=547, Expect=1e-162]; ENSMUSG00000045868, Gvin1, GTPase, very large interferon inducible 1, [RH, Score=545, Expect=6e-162]} {RNA1509_49381, RNA1509_9870} {RNA1310_1029.1, RNA1509_49381, RNA1509_9870} {RNA1509_49381, RNA1509_9870, RNA815_295}
10. MligTC455_17255 12 0.24 Mlig455_013836

Neo: -

Age: Up-Down-Up

 0.951 - - - - 0.951 - Mlig455_013836 {REF} {Length: 3587} {TRANSSPLICED} {RNA1509_17462, RNA1509_24953} {RNA1310_485.1, RNA1509_24953} {RNA1509_24953, RNA815_2772.1}
11. MligTC455_19119 48 0.99 Mlig455_060984

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_060984 {REF} {Length: 533} {NoTransDecoderORF} {RNA1509_52549}
12. MligTC455_33731 1472 30.66 Mlig455_016955, Mlig455_017043

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 4.117

Region-enriched R4: 2.782/0.00000

Regeneration-downregulated R4: -2.204

Regeneration-depleted R4: -2.204

 PHKB 0.95 - - - - 0.950 -

Mlig455_016955 {REF} {Length: 6421} {TRANSSPLICED} {Pfam: Glycosyl hydrolases family 15 [PF00723.23, score=253.9]; PHD-finger [PF00628.31, score=56.6]; Phosphorylase b kinase C-terminal domain [PF19292.1, score=48.6]; Ring finger domain [PF13639.8, score=48.3]; PHD-finger [PF13831.8, score=32.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=23.7]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=22.2]} {Human: ENSG00000102893, PHKB, phosphorylase kinase regulatory subunit beta, [RH, Score=739, Expect=0.0]} {Mouse: ENSMUSG00000036879, Phkb, phosphorylase kinase beta, [RH, Score=737, Expect=0.0]} {Dmel: FBgn0031995, CG8475, [RH, Score=731, Expect=0.0]} {Celegans: WBGene00022059, Y67D8A.2, [RH, Score=649, Expect=0.0]} {Smed: dd_Smed_v6_3657_0_1, dd_Smed_v6_3657_0_1, [RH, Score=939, Expect=0.0]} {RNA1509_4203, RNA1509_7083} {RNA1310_2343, RNA1509_4203} {RNA1509_4203, RNA815_674}

Mlig455_017043 {REF} {Length: 6886} {TRANSSPLICED} {Pfam: Glycosyl hydrolases family 15 [PF00723.23, score=252.2]; PHD-finger [PF00628.31, score=56.6]; Phosphorylase b kinase C-terminal domain [PF19292.1, score=48.6]; Ring finger domain [PF13639.8, score=47.4]; PHD-finger [PF13831.8, score=32.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=23.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=19.8]} {Human: ENSG00000102893, PHKB, phosphorylase kinase regulatory subunit beta, [RH, Score=738, Expect=0.0]} {Mouse: ENSMUSG00000036879, Phkb, phosphorylase kinase beta, [RH, Score=737, Expect=0.0]} {Dmel: FBgn0031995, CG8475, [RH, Score=732, Expect=0.0]} {Celegans: WBGene00022059, Y67D8A.2, [RH, Score=649, Expect=0.0]} {Smed: dd_Smed_v6_3657_0_1, dd_Smed_v6_3657_0_1, [RH, Score=935, Expect=0.0]} {RNA1509_7083} {RNA1310_2343} {RNA815_674}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA