M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_48488

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48488 142 2.97 Mlig455_019762

Neo: -

Age: Down-Up-Down

Region-enriched R5: 2.450/0.03622

 TBC1D12 Mlig455_019762 {REF} {Length: 3903} {TRANSSPLICED} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=150.6]} {Human: ENSG00000108239, TBC1D12, TBC1 domain family member 12, [RH, Score=313, Expect=2e-96]; ENSG00000132405, TBC1D14, TBC1 domain family member 14, [RH, Score=312, Expect=7e-97]} {Mouse: ENSMUSG00000048720, Tbc1d12, TBC1D12: TBC1 domain family, member 12, [RH, Score=311, Expect=8e-97]; ENSMUSG00000029192, Tbc1d14, TBC1 domain family, member 14, [RH, Score=308, Expect=3e-95]} {Dmel: FBgn0035879, GAPcenA, GTPase activating protein and centrosome-associated, [Score=99.0, Expect=4e-21]} {Celegans: WBGene00044061, tbc-12, TBC (Tre-2/Bub2/Cdc16) domain family, [RH, Score=266, Expect=8e-81]} {Smed: dd_Smed_v6_7827_0_1, dd_Smed_v6_7827_0_1, [RH, Score=261, Expect=1e-78]} {RNA1509_49497} {RNA1310_16549, RNA1509_49497} {RNA1509_49497, RNA815_3936.1}

Cumulative graph for MligTC455_48488

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.416 2.306 0.99966 1.00000
RegionR2 2.621 2.306 0.03132 0.20069
RegionR3 1.426 2.306 0.21450 0.75561
RegionR4 -0.452 2.306 0.85627 1.00000
RegionR5 2.45 2.306 0.00530 0.03622
RegionR6 1.54 2.306 0.18161 0.74551
RegionR7 2.99 2.306 0.00726 0.14099
RegionR8 -4.159 2.306 0.99952 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.829 2.306 0.99989 1.00000
RegenerationR2 0.058 2.306 0.93552 1.00000
RegenerationR3 1.013 2.306 0.18998 0.62530
RegenerationR4 2.15 2.306 0.00361 0.08155
RegenerationR5 0.434 2.306 0.44824 0.82990
RegenerationR6 0.521 2.306 0.52787 0.82537
RegenerationBL 2.245 2.306 0.12247 0.41535
RegenerationTP 3.097 2.306 0.08738 0.46621


Genes with expression patterns similar to MligTC455_48488

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48488 142 2.97 Mlig455_019762

Neo: -

Age: Down-Up-Down

Region-enriched R5: 2.450/0.03622

 TBC1D12 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_019762 {REF} {Length: 3903} {TRANSSPLICED} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=150.6]} {Human: ENSG00000108239, TBC1D12, TBC1 domain family member 12, [RH, Score=313, Expect=2e-96]; ENSG00000132405, TBC1D14, TBC1 domain family member 14, [RH, Score=312, Expect=7e-97]} {Mouse: ENSMUSG00000048720, Tbc1d12, TBC1D12: TBC1 domain family, member 12, [RH, Score=311, Expect=8e-97]; ENSMUSG00000029192, Tbc1d14, TBC1 domain family, member 14, [RH, Score=308, Expect=3e-95]} {Dmel: FBgn0035879, GAPcenA, GTPase activating protein and centrosome-associated, [Score=99.0, Expect=4e-21]} {Celegans: WBGene00044061, tbc-12, TBC (Tre-2/Bub2/Cdc16) domain family, [RH, Score=266, Expect=8e-81]} {Smed: dd_Smed_v6_7827_0_1, dd_Smed_v6_7827_0_1, [RH, Score=261, Expect=1e-78]} {RNA1509_49497} {RNA1310_16549, RNA1509_49497} {RNA1509_49497, RNA815_3936.1}
2. MligTC455_40188 272 5.67 Mlig455_062295

Neo: Irradiation

Age: -

Region-enriched R5: 1.002/0.04846

 1.816 0.865 - - - - 0.951 Mlig455_062295 {REF} {Length: 5152} {TRANSSPLICED} {RNA1509_31164, RNA1509_6022} {RNA1310_1836, RNA1509_31164, RNA1509_6022} {RNA1509_31164, RNA1509_6022, RNA815_1211}
3. MligTC455_40187 270 5.62 Mlig455_049370

Neo: Irradiation

Age: Down-Up-Down, logFC(26M/2M)=0.494

 1.802 0.850 - - - - 0.952 Mlig455_049370 {REF} {Length: 5146} {TRANSSPLICED} {RNA1509_31164, RNA1509_58180} {RNA1310_1836, RNA1509_58180} {RNA1509_58180, RNA815_1211}
4. MligTC455_36063 57 1.19 Mlig455_015640, Mlig455_020112, Mlig455_027622, Mlig455_045945, Mlig455_045973

Neo: Germline

Age: -

 1.773 - - - 0.820 0.953 -

Mlig455_015640 {REF} {Length: 1064} {Pfam: Phage integrase family [PF00589.24, score=20.8]} {RNA1310_118313} {RNA815_64822}

Mlig455_020112 {REF} {Length: 1119} {RNA1509_19049} {RNA1310_107645} {RNA815_64822}

Mlig455_027622 {REF} {Length: 693} {RNA1509_19747} {RNA1310_107645} {RNA815_64822}

Mlig455_045945 {REF} {Length: 1439} {Pfam: Phage integrase family [PF00589.24, score=22.0]} {RNA1509_19747} {RNA1310_118313} {RNA815_64822}

Mlig455_045973 {REF} {Length: 1439} {Pfam: Phage integrase family [PF00589.24, score=22.0]} {RNA1509_19747} {RNA1310_118313} {RNA815_64822}
5. MligTC455_19119 48 0.99 Mlig455_060984

Neo: -

Age: -

 1.722 - - - 0.770 0.952 - Mlig455_060984 {REF} {Length: 533} {NoTransDecoderORF} {RNA1509_52549}
6. MligTC455_23413 38 0.79 Mlig455_020722

Neo: -

Age: Up-Down-Down

 0.971 - - - - 0.971 - Mlig455_020722 {REF} {Length: 3316} {TRANSSPLICED} {RNA1509_28642} {RNA1310_14764} {RNA815_31000}
7. MligTC455_32859 280 5.83 Mlig455_055206

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_055206 {REF} {Length: 1588} {TRANSSPLICED} {Pfam: Nucleolar and spindle-associated protein [PF16006.7, score=49.6]} {RNA1509_35887} {RNA1310_11141.1} {RNA815_19948}
8. MligTC455_50537 367 7.65 Mlig455_051692

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.564/0.03047

 TJAP1 0.96 - - - - - 0.960 Mlig455_051692 {REF} {Length: 1381} {TRANSSPLICED} {Human: ENSG00000137221, TJAP1, tight junction associated protein 1, [RH, Score=53.1, Expect=2e-07]} {Dmel: FBgn0259224, CG42324, [RH, Score=78.6, Expect=3e-16]} {Smed: dd_Smed_v6_7904_0_1, dd_Smed_v6_7904_0_1, [RH, Score=105, Expect=8e-27]} {RNA1509_16465} {RNA1310_23318} {RNA815_12833.1}
9. MligTC455_18094 181 3.78 Mlig455_042157

Neo: Int S/G2/M

Age: Down-Down-Down

Region-enriched R5: 2.086/0.01667

 0.959 - - - - - 0.959 Mlig455_042157 {REF} {Length: 1425} {TRANSSPLICED} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=38.8]} {Dmel: FBgn0043002, Chrac-14, Chromatin accessibility complex 14kD protein, [RH, Score=55.8, Expect=9e-10]} {RNA1509_35988} {RNA1310_23246} {RNA815_18085}
10. MligTC455_22337 3518 73.28 Mlig455_024238

Neo: -

Age: Down-Down-Up

Region-enriched R4: 1.804/0.00234

Regeneration-upregulated TP: 2.173

Regeneration-enriched TP: 2.173

 UBE2D4 0.957 - - - 0.957 - - Mlig455_024238 {REF} {Length: 1295} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=165.0]} {Human: ENSG00000078967, UBE2D4, ubiquitin conjugating enzyme E2 D4 (putative), [Score=182, Expect=8e-59]; ENSG00000131508, UBE2D2, ubiquitin conjugating enzyme E2 D2, [Score=182, Expect=6e-59]; ENSG00000109332, UBE2D3, ubiquitin conjugating enzyme E2 D3, [Score=181, Expect=2e-58]; ENSG00000072401, UBE2D1, ubiquitin conjugating enzyme E2 D1, [Score=179, Expect=1e-57]; ENSG00000170035, UBE2E3, ubiquitin conjugating enzyme E2 E3, [Score=174, Expect=5e-55]} {Mouse: ENSMUSG00000091896, Ube2d2a, ubiquitin-conjugating enzyme E2D 2A, [Score=182, Expect=4e-59]; ENSMUSG00000063447, Ube2d2b, ubiquitin-conjugating enzyme E2D 2B, [Score=181, Expect=2e-58]; ENSMUSG00000078578, Ube2d3, ubiquitin-conjugating enzyme E2D 3, [Score=181, Expect=1e-58]; ENSMUSG00000019927, Ube2d1, ubiquitin-conjugating enzyme E2D 1, [Score=179, Expect=7e-58]; ENSMUSG00000027011, Ube2e3, ubiquitin-conjugating enzyme E2E 3, [Score=174, Expect=3e-55]} {Dmel: FBgn0011217, eff, effete, [Score=182, Expect=3e-59]} {Celegans: WBGene00002344, let-70, Ubiquitin-conjugating enzyme E2 2, [Score=180, Expect=2e-58]} {Smed: dd_Smed_v6_153_0_1, dd_Smed_v6_153_0_1, [Score=180, Expect=1e-58]} {RNA1509_21135, RNA1509_22341, RNA1509_23562, RNA1509_23617, RNA1509_3311, RNA1509_35576, RNA1509_937} {RNA1310_30103.1, RNA1509_21135, RNA1509_22341, RNA1509_23562, RNA1509_23617, RNA1509_3311, RNA1509_35576, RNA1509_937} {RNA1509_21135, RNA1509_22341, RNA1509_23562, RNA1509_23617, RNA1509_3311, RNA1509_35576, RNA1509_937, RNA815_17640.1}
11. MligTC455_48983 364 7.59 Mlig455_006479

Neo: -

Age: -

 HEXB 0.955 - - - - - 0.955 Mlig455_006479 {REF} {Length: 4395} {TRANSSPLICED} {Pfam: Glycosyl hydrolase family 20, catalytic domain [PF00728.24, score=279.9]; beta-acetyl hexosaminidase like [PF14845.8, score=64.9]; Glycosyl hydrolase family 20, domain 2 [PF02838.17, score=25.4]} {Human: ENSG00000049860, HEXB, hexosaminidase subunit beta, [Score=404, Expect=3e-131]; ENSG00000213614, HEXA, hexosaminidase subunit alpha, [Score=392, Expect=6e-127]} {Mouse: ENSMUSG00000021665, Hexb, hexosaminidase B, [Score=397, Expect=5e-129]; ENSMUSG00000025232, Hexa, hexosaminidase A, [Score=393, Expect=1e-127]} {Dmel: FBgn0045063, fdl, fused lobes, [RH, Score=214, Expect=4e-59]} {Celegans: WBGene00020509, hex-1, Beta-hexosaminidase A, [Score=313, Expect=1e-96]} {Smed: dd_Smed_v6_3964_0_1, dd_Smed_v6_3964_0_1, [RH, Score=477, Expect=1e-156]} {RNA1509_11107} {RNA1310_1997.1} {RNA815_5636}
12. MligTC455_48298 55 1.14 Mlig455_067985

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_067985 {REF} {Length: 1658} {TRANSSPLICED} {Pfam: Centrosomin N-terminal motif 1 [PF07989.13, score=19.1]} {RNA1509_50908} {RNA1310_7799.1} {RNA815_38707}
13. MligTC455_41807 416 8.67 Mlig455_015689, Mlig455_015701

Neo: -

Age: -

 0.952 0.952 - - - - -

Mlig455_015689 {REF} {Length: 2631} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=28.6]} {Celegans: WBGene00009553, hinf-1, HIstone Nuclear Factor p (P) homolog, [Score=52.0, Expect=1e-06]} {RNA1509_17341} {RNA1310_16943} {RNA815_44059}

Mlig455_015701 {REF} {Length: 2697} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=28.1]} {Celegans: WBGene00009553, hinf-1, HIstone Nuclear Factor p (P) homolog, [Score=52.4, Expect=9e-07]} {RNA1509_17341} {RNA1310_16943} {RNA815_24677.1}
14. MligTC455_14680 11 0.23 Mlig455_038726

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_038726 {REF} {Length: 1588}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA