M. lignano Tomo-Seq
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Results for MligTC455_23441

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23441 513 10.70 Mlig455_021694

Neo: -

Age: Up-Down-Down

 MAPKBP1 Mlig455_021694 {REF} {Length: 9716} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=97.2]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=50.5]} {Human: ENSG00000137802, MAPKBP1, mitogen-activated protein kinase binding protein 1, [RH, Score=509, Expect=4e-153]; ENSG00000075702, WDR62, WD repeat domain 62, [RH, Score=502, Expect=2e-150]} {Mouse: ENSMUSG00000033902, Mapkbp1, mitogen-activated protein kinase binding protein 1, [RH, Score=509, Expect=5e-153]; ENSMUSG00000037020, Wdr62, WD repeat domain 62, [RH, Score=501, Expect=3e-150]} {Dmel: FBgn0031374, Wdr62, WD repeat domain 62, [RH, Score=470, Expect=3e-136]} {Celegans: WBGene00019237, H24G06.1, [RH, Score=242, Expect=4e-64]} {Smed: dd_Smed_v6_7818_0_2, dd_Smed_v6_7818_0_2, [RH, Score=545, Expect=1e-165]} {RNA1509_11124, RNA1509_14492} {RNA1310_1098.1, RNA1509_14492} {RNA1509_14492, RNA815_15514}

Cumulative graph for MligTC455_23441

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.789 3.834 0.45686 1.00000
RegionR2 0.198 3.834 0.68257 1.00000
RegionR3 -0.152 3.834 0.69198 1.00000
RegionR4 0.327 3.834 0.47747 0.80560
RegionR5 -0.24 3.834 0.50005 0.86303
RegionR6 -0.181 3.834 0.64725 1.00000
RegionR7 0.516 3.834 0.27924 0.91175
RegionR8 -1.257 3.834 0.11229 0.62045

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.616 3.834 0.04555 0.68092
RegenerationR2 -0.047 3.834 0.89918 1.00000
RegenerationR3 -0.309 3.834 0.47015 0.84415
RegenerationR4 -0.846 3.834 0.05757 0.38502
RegenerationR5 -0.141 3.834 0.72263 0.96057
RegenerationR6 0.297 3.834 0.49373 0.80122
RegenerationBL 0.181 3.834 0.75282 1.00000
RegenerationTP -1.308 3.834 0.09677 0.48669


Genes with expression patterns similar to MligTC455_23441

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23441 513 10.7 Mlig455_021694

Neo: -

Age: Up-Down-Down

 MAPKBP1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_021694 {REF} {Length: 9716} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=97.2]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=50.5]} {Human: ENSG00000137802, MAPKBP1, mitogen-activated protein kinase binding protein 1, [RH, Score=509, Expect=4e-153]; ENSG00000075702, WDR62, WD repeat domain 62, [RH, Score=502, Expect=2e-150]} {Mouse: ENSMUSG00000033902, Mapkbp1, mitogen-activated protein kinase binding protein 1, [RH, Score=509, Expect=5e-153]; ENSMUSG00000037020, Wdr62, WD repeat domain 62, [RH, Score=501, Expect=3e-150]} {Dmel: FBgn0031374, Wdr62, WD repeat domain 62, [RH, Score=470, Expect=3e-136]} {Celegans: WBGene00019237, H24G06.1, [RH, Score=242, Expect=4e-64]} {Smed: dd_Smed_v6_7818_0_2, dd_Smed_v6_7818_0_2, [RH, Score=545, Expect=1e-165]} {RNA1509_11124, RNA1509_14492} {RNA1310_1098.1, RNA1509_14492} {RNA1509_14492, RNA815_15514}
2. MligTC455_03720 238 4.97 Mlig455_049471

Neo: Irradiation

Age: logFC(26M/2M)=0.202

 LIMA1 1.745 - - - 0.775 0.970 - Mlig455_049471 {REF} {Length: 5451} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=46.7]} {Human: ENSG00000050405, LIMA1, LIM domain and actin binding 1, [Score=85.5, Expect=1e-16]; ENSG00000163092, XIRP2, xin actin binding repeat containing 2, [Score=85.5, Expect=1e-16]} {Mouse: ENSMUSG00000023022, Lima1, LIM domain and actin binding 1, [RH, Score=84.7, Expect=9e-17]} {Smed: dd_Smed_v6_921_0_1, dd_Smed_v6_921_0_1, [RH, Score=97.8, Expect=1e-21]} {RNA1509_30907} {RNA1310_11285.1} {RNA815_11103}
3. MligTC455_47347 225 4.68 Mlig455_055753

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_055753 {REF} {Length: 1580} {RNA1509_29891} {RNA1310_21111, RNA1509_29891} {RNA1509_29891, RNA815_31371}
4. MligTC455_52227 303 6.32 Mlig455_060574

Neo: -

Age: -

 MAPK10 0.968 - - - - 0.968 - Mlig455_060574 {REF} {Length: 2333} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=202.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=99.0]; ABC1 atypical kinase-like domain [PF03109.18, score=23.3]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=20.1]} {Human: ENSG00000109339, MAPK10, mitogen-activated protein kinase 10, [RH, Score=588, Expect=0.0]; ENSG00000107643, MAPK8, mitogen-activated protein kinase 8, [RH, Score=579, Expect=0.0]} {Mouse: ENSMUSG00000046709, Mapk10, mitogen-activated protein kinase 10, [RH, Score=588, Expect=0.0]; ENSMUSG00000021936, Mapk8, mitogen-activated protein kinase 8, [RH, Score=579, Expect=0.0]} {Dmel: FBgn0000229, bsk, basket, [RH, Score=580, Expect=0.0]} {Celegans: WBGene00002178, jnk-1, Stress-activated protein kinase jnk-1, [RH, Score=546, Expect=0.0]} {Smed: dd_Smed_v6_5924_0_1, dd_Smed_v6_5924_0_1, [RH, Score=556, Expect=0.0]} {RNA1509_19128, RNA1509_32566} {RNA1310_10146, RNA1509_19128, RNA1509_32566} {RNA1509_19128, RNA1509_32566, RNA815_12041}
5. MligTC455_38113 246 5.13 Mlig455_038735, Mlig455_041310, Mlig455_068428

Neo: -

Age: Up-Down-Up

 0.964 - - - - 0.964 -

Mlig455_038735 {REF} {Length: 11183} {RNA1509_26128, RNA1509_47004} {RNA1310_7005.1, RNA1509_26128, RNA1509_47004} {RNA1509_26128, RNA1509_47004, RNA815_23435}

Mlig455_041310 {REF} {Length: 2248} {NoTransDecoderORF} {RNA1509_58500} {RNA1310_19542.3, RNA1509_58500} {RNA1509_58500, RNA815_58957}

Mlig455_068428 {REF} {Length: 1021} {NoTransDecoderORF} {RNA1509_12775} {RNA1310_27018} {RNA815_50345}
6. MligTC455_47105 59 1.24 Mlig455_037822

Neo: -

Age: Down-Up-Down

 LRCH3 0.964 - - - - 0.964 - Mlig455_037822 {REF} {Length: 2308} {Pfam: Calponin homology (CH) domain [PF00307.33, score=35.3]; Leucine rich repeat [PF13855.8, score=24.4]; Leucine Rich repeats (2 copies) [PF12799.9, score=24.2]} {Human: ENSG00000186001, LRCH3, leucine rich repeats and calponin homology domain containing 3, [RH, Score=93.6, Expect=9e-20]} {Mouse: ENSMUSG00000022801, Lrch3, leucine-rich repeats and calponin homology (CH) domain containing 3, [RH, Score=92.4, Expect=1e-19]} {Dmel: FBgn0032633, Lrch, Leucine-rich-repeats and calponin homology domain protein, [Score=89.7, Expect=8e-19]} {Celegans: WBGene00015779, lrch-1, Leucine-rich Repeats (LRR) and Calponin Homology (CH) domain homolog, [Score=63.2, Expect=2e-10]} {Smed: dd_Smed_v6_12270_0_1, dd_Smed_v6_12270_0_1, [Score=93.6, Expect=3e-20]} {RNA1509_10681} {RNA1310_4311} {RNA815_2362}
7. MligTC455_37641 124 2.58 Mlig455_024414, Mlig455_024529

Neo: -

Age: Up-Down-Up

 0.953 - - - - - 0.953

Mlig455_024414 {REF} {Length: 2837} {RNA1509_47602} {RNA1310_22262} {RNA815_21478}

Mlig455_024529 {REF} {Length: 486} {NoTransDecoderORF} {RNA1509_10628} {RNA1310_118956} {RNA815_419.1}
8. MligTC455_03623 125 2.61 Mlig455_006116

Neo: -

Age: -

 SMARCE1 0.951 - - - 0.951 - - Mlig455_006116 {REF} {Length: 3982} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=53.4]} {Human: ENSG00000073584, SMARCE1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, [Score=141, Expect=3e-36]} {Mouse: ENSMUSG00000037935, Smarce1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, [Score=141, Expect=2e-36]} {Dmel: FBgn0030093, Bap111, Brahma associated protein 111kD, [Score=130, Expect=1e-31]} {Celegans: WBGene00022182, swsn-3, SWI/SNF nucleosome remodeling complex component, [RH, Score=99.0, Expect=2e-22]} {Smed: dd_Smed_v6_5085_0_1, dd_Smed_v6_5085_0_1, [Score=132, Expect=2e-32]} {RNA1509_20321} {RNA1310_5540} {RNA815_5944}

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