M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23488

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23488 260 5.42 Mlig455_006084, Mlig455_006111

Neo: -

Age: -

Mlig455_006084 {REF} {Length: 2438} {TRANSSPLICED} {RNA1509_55206} {RNA1310_12495} {RNA815_795.1}

Mlig455_006111 {REF} {Length: 2449} {TRANSSPLICED} {RNA1509_55206} {RNA1310_12495} {RNA815_795.1}

Cumulative graph for MligTC455_23488

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.061 2.931 0.97389 1.00000
RegionR2 0.261 2.931 0.74978 1.00000
RegionR3 0.025 2.931 0.97037 1.00000
RegionR4 -0.283 2.931 0.74598 1.00000
RegionR5 -1.5 2.931 0.01876 0.09255
RegionR6 -0.236 2.931 0.71733 1.00000
RegionR7 0.192 2.931 0.80100 1.00000
RegionR8 1.48 2.931 0.06218 0.48566

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.812 2.931 0.41665 1.00000
RegenerationR2 0.094 2.931 0.88593 1.00000
RegenerationR3 -0.891 2.931 0.30355 0.73455
RegenerationR4 0.199 2.931 0.81604 0.99171
RegenerationR5 -0.721 2.931 0.38257 0.78818
RegenerationR6 0.241 2.931 0.74783 0.95107
RegenerationBL -0.776 2.931 0.46667 0.83328
RegenerationTP -1.287 2.931 0.19580 0.63505


Genes with expression patterns similar to MligTC455_23488

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23488 260 5.42 Mlig455_006084, Mlig455_006111

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_006084 {REF} {Length: 2438} {TRANSSPLICED} {RNA1509_55206} {RNA1310_12495} {RNA815_795.1}

Mlig455_006111 {REF} {Length: 2449} {TRANSSPLICED} {RNA1509_55206} {RNA1310_12495} {RNA815_795.1}
2. MligTC455_31199 97 2.02 Mlig455_052593

Neo: -

Age: Up-Down-Up

 TRPA1 1.769 - - - - 0.953 0.816 Mlig455_052593 {REF} {Length: 5026} {tRNA: Undet(NNN),pseudo, score=20.2} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=229.9]; Ankyrin repeats (many copies) [PF13637.8, score=125.3]; Ankyrin repeats (many copies) [PF13857.8, score=124.0]; Ankyrin repeat [PF13606.8, score=103.8]; Ankyrin repeat [PF00023.32, score=95.8]} {Human: ENSG00000104321, TRPA1, transient receptor potential cation channel subfamily A member 1, [Score=188, Expect=5e-53]} {Mouse: ENSMUSG00000032769, Trpa1, transient receptor potential cation channel, subfamily A, member 1, [Score=186, Expect=3e-52]} {Dmel: FBgn0035934, TrpA1, Transient receptor potential cation channel A1, [Score=247, Expect=7e-74]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=103, Expect=4e-24]} {Smed: dd_Smed_v6_14207_0_1, dd_Smed_v6_14207_0_1, [Score=279, Expect=1e-85]} {RNA1509_23399} {RNA1310_1132.2} {RNA815_2938.1}
3. MligTC455_34621 182 3.8 Mlig455_049282, Mlig455_050627

Neo: -

Age: Down-Up-Down

Region-enriched R2: 4.682/0.00001

 SYNGR1 0.979 - - 0.979 - - -

Mlig455_049282 {REF} {Length: 2467} {Pfam: Membrane-associating domain [PF01284.25, score=80.9]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=27.2]} {Human: ENSG00000100321, SYNGR1, synaptogyrin 1, [Score=139, Expect=2e-40]; ENSG00000127561, SYNGR3, synaptogyrin 3, [Score=134, Expect=4e-38]} {Mouse: ENSMUSG00000007021, Syngr3, synaptogyrin 3, [Score=137, Expect=1e-39]; ENSMUSG00000022415, Syngr1, synaptogyrin 1, [Score=136, Expect=4e-39]} {Dmel: FBgn0033876, Syngr, Synaptogyrin, [Score=131, Expect=3e-37]} {Smed: dd_Smed_v6_6478_0_1, dd_Smed_v6_6478_0_1, [Score=175, Expect=2e-54]} {RNA1509_46422} {RNA1310_26465} {RNA815_24245}

Mlig455_050627 {REF} {Length: 2451} {Pfam: Membrane-associating domain [PF01284.25, score=80.9]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=23.8]} {Human: ENSG00000100321, SYNGR1, synaptogyrin 1, [Score=142, Expect=3e-41]} {Mouse: ENSMUSG00000022415, Syngr1, synaptogyrin 1, [Score=137, Expect=2e-39]; ENSMUSG00000007021, Syngr3, synaptogyrin 3, [Score=135, Expect=4e-39]} {Dmel: FBgn0033876, Syngr, Synaptogyrin, [Score=132, Expect=1e-37]} {Smed: dd_Smed_v6_6478_0_1, dd_Smed_v6_6478_0_1, [Score=176, Expect=4e-55]} {RNA1509_46422} {RNA1310_26465} {RNA815_24245}
4. MligTC455_08216 34 0.7 Mlig455_009138

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_009138 {REF} {Length: 379} {NoTransDecoderORF} {RNA1310_66482.1} {RNA815_62564}
5. MligTC455_02375 31 0.64 Mlig455_023809

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_023809 {REF} {Length: 555} {Pfam: RNase H [PF00075.26, score=28.7]} {RNA1310_49685}
6. MligTC455_29539 104 2.17 Mlig455_051355

Neo: -

Age: -

 MPP7 0.967 - - - 0.967 - - Mlig455_051355 {REF} {Length: 5133} {Pfam: PDZ domain [PF00595.26, score=44.0]; Guanylate kinase [PF00625.23, score=36.1]; L27 domain [PF02828.18, score=25.8]; Variant SH3 domain [PF07653.19, score=24.9]; SH3 domain [PF00018.30, score=23.1]; Variant SH3 domain [PF14604.8, score=20.8]} {Human: ENSG00000150054, MPP7, membrane palmitoylated protein 7, [Score=276, Expect=1e-84]} {Mouse: ENSMUSG00000057440, Mpp7, membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7), [Score=295, Expect=7e-92]} {Dmel: FBgn0050021, metro, menage a trois, [RH, Score=303, Expect=4e-95]} {Celegans: WBGene00021914, magu-1, MAGUK family, [Score=162, Expect=4e-43]} {Smed: dd_Smed_v6_7957_0_1, dd_Smed_v6_7957_0_1, [RH, Score=383, Expect=2e-126]} {RNA1509_42326} {RNA1310_8192} {RNA815_18062}
7. MligTC455_12702 59 1.24 Mlig455_025335

Neo: -

Age: Up-Down-Down

Region-enriched R4: 4.426/0.03007

 0.964 - - - 0.964 - - Mlig455_025335 {REF} {Length: 1149} {RNA1509_35427} {RNA1310_33690} {RNA815_24467}
8. MligTC455_13389 35 0.74 Mlig455_030163

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_030163 {REF} {Length: 3160} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=97.3]} {Smed: dd_Smed_v6_13880_0_1, dd_Smed_v6_13880_0_1, [Score=93.2, Expect=4e-20]} {RNA1310_55606} {RNA815_37627}
9. MligTC455_24173 129 2.68 Mlig455_002757, Mlig455_063358

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.484

 KCNK5 0.959 - - - - 0.959 -

Mlig455_002757 {REF} {Length: 4268} {Pfam: Ion channel [PF07885.18, score=105.3]} {Human: ENSG00000164626, KCNK5, potassium two pore domain channel subfamily K member 5, [Score=85.9, Expect=3e-19]} {Mouse: ENSMUSG00000023243, Kcnk5, potassium channel, subfamily K, member 5, [Score=87.4, Expect=6e-20]; ENSMUSG00000046410, Kcnk6, potassium inwardly-rectifying channel, subfamily K, member 6, [Score=87.0, Expect=3e-20]} {Dmel: FBgn0038165, Task6, TWIK-related acid-sensitive K[+] channel 6, [Score=80.1, Expect=1e-17]} {Celegans: WBGene00006318, sup-9, Two pore potassium channel protein sup-9, [Score=82.8, Expect=7e-19]} {Smed: dd_Smed_v6_11226_0_1, dd_Smed_v6_11226_0_1, [Score=89.7, Expect=6e-22]} {RNA1310_31805} {RNA815_15556}

Mlig455_063358 {REF} {Length: 4490} {Pfam: Ion channel [PF07885.18, score=104.2]} {Human: ENSG00000164626, KCNK5, potassium two pore domain channel subfamily K member 5, [Score=88.6, Expect=3e-19]; ENSG00000171303, KCNK3, potassium two pore domain channel subfamily K member 3, [Score=85.5, Expect=2e-18]} {Mouse: ENSMUSG00000023243, Kcnk5, potassium channel, subfamily K, member 5, [Score=90.1, Expect=5e-20]; ENSMUSG00000046410, Kcnk6, potassium inwardly-rectifying channel, subfamily K, member 6, [Score=87.8, Expect=1e-19]; ENSMUSG00000049265, Kcnk3, potassium channel, subfamily K, member 3, [Score=86.3, Expect=7e-19]} {Dmel: FBgn0038165, Task6, TWIK-related acid-sensitive K[+] channel 6, [Score=86.7, Expect=4e-19]} {Celegans: WBGene00006318, sup-9, Two pore potassium channel protein sup-9, [Score=84.3, Expect=1e-18]} {Smed: dd_Smed_v6_11226_0_1, dd_Smed_v6_11226_0_1, [Score=97.8, Expect=5e-24]} {RNA1310_31805} {RNA815_15556}
10. MligTC455_53859 28 0.59 Mlig455_056956

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_056956 {REF} {Length: 1452} {RNA1310_30892} {RNA815_30662}
11. MligTC455_19893 77 1.59 Mlig455_033319

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_033319 {REF} {Length: 534} {NoTransDecoderORF} {RNA1509_46670} {RNA1310_84118} {RNA815_60581}
12. MligTC455_13064 168 3.49 Mlig455_014832

Neo: -

Age: Down-Up-Down

 LRRC73 0.955 - - - 0.955 - - Mlig455_014832 {REF} {Length: 2343} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=38.8]} {Human: ENSG00000204052, LRRC73, leucine rich repeat containing 73, [RH, Score=114, Expect=2e-29]} {Mouse: ENSMUSG00000071073, Lrrc73, leucine rich repeat containing 73, [RH, Score=114, Expect=1e-29]} {RNA1509_10807, RNA1509_28411, RNA1509_4264, RNA1509_57279} {RNA1310_13189.1, RNA1509_10807, RNA1509_28411, RNA1509_4264} {RNA1509_10807, RNA1509_28411, RNA1509_4264, RNA815_5530.1}
13. MligTC455_12688 18 0.36 Mlig455_066704

Neo: -

Age: -

 0.952 - - 0.952 - - - Mlig455_066704 {REF} {Length: 581} {NoTransDecoderORF} {RNA1509_59020} {RNA1310_85238} {RNA815_31032.2}
14. MligTC455_42217 16 0.34 Mlig455_035749

Neo: -

Age: -

 OSR1 0.952 - - 0.952 - - - Mlig455_035749 {REF} {Length: 1970} {Human: ENSG00000143867, OSR1, odd-skipped related transciption factor 1, [Score=55.8, Expect=3e-08]; ENSG00000164920, OSR2, odd-skipped related transciption factor 2, [Score=53.9, Expect=1e-07]} {Mouse: ENSMUSG00000048387, Osr1, odd-skipped related transcription factor 1, [Score=56.2, Expect=2e-08]; ENSMUSG00000022330, Osr2, odd-skipped related 2, [Score=54.3, Expect=8e-08]} {Dmel: FBgn0002985, odd, odd skipped, [Score=53.1, Expect=2e-07]} {Celegans: WBGene00003846, odd-2, Protein odd-skipped-related 2, [Score=54.3, Expect=3e-08]} {Smed: dd_Smed_v6_10039_0_1, dd_Smed_v6_10039_0_1, [Score=57.8, Expect=2e-09]} {RNA1509_57522} {RNA1310_26149} {RNA815_39133}
15. MligTC455_53835 678 14.12 Mlig455_038053

Neo: -

Age: -

 SLC22A5 0.952 0.952 - - - - - Mlig455_038053 {REF} {Length: 3178} {TRANSSPLICED} {Pfam: Sugar (and other) transporter [PF00083.26, score=104.5]; Major Facilitator Superfamily [PF07690.18, score=81.0]} {Human: ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=186, Expect=2e-51]} {Mouse: ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=190, Expect=4e-53]; ENSMUSG00000018900, Slc22a5, solute carrier family 22 (organic cation transporter), member 5, [Score=185, Expect=2e-51]} {Dmel: FBgn0038407, CG6126, [Score=191, Expect=2e-53]} {Celegans: WBGene00003843, oct-2, Organic Cation Transporter; Organic cation transporter, [Score=169, Expect=7e-45]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=179, Expect=3e-49]} {RNA1509_52412} {RNA1310_15844.1, RNA1509_52412} {RNA1509_52412, RNA815_8229.1}
16. MligTC455_19492 1497 31.2 Mlig455_007703, Mlig455_021035, Mlig455_021069

Neo: -

Age: -

 0.951 - - - - 0.951 -

Mlig455_007703 {REF} {Length: 622} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_18414} {RNA1310_42507} {RNA815_19425}

Mlig455_021035 {REF} {Length: 625} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_18414} {RNA1310_42507} {RNA815_19425}

Mlig455_021069 {REF} {Length: 623} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_18414} {RNA1310_42507, RNA1509_18414} {RNA1509_18414, RNA815_19425}
17. MligTC455_48213 164 3.41 Mlig455_056285, Mlig455_056310

Neo: -

Age: -

Region-enriched R2: 5.079/0.00142

 0.951 - - - - 0.951 -

Mlig455_056285 {REF} {Length: 2259} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=140.9]} {Smed: dd_Smed_v6_22997_0_1, dd_Smed_v6_22997_0_1, [Score=85.1, Expect=2e-17]} {RNA1310_14535} {RNA815_31041}

Mlig455_056310 {REF} {Length: 1953} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=140.9]} {Smed: dd_Smed_v6_22997_0_1, dd_Smed_v6_22997_0_1, [Score=85.1, Expect=2e-17]} {RNA1310_14535} {RNA815_31041}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA