Data search
Results for MligTC455_23490
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_23490 | 367 | 7.64 | Mlig455_019595 | Neo: - Age: Up-Down-Down |
Mlig455_019595 {REF} {Length: 1836} {NoTransDecoderORF} {RNA1509_20980} {RNA1310_8876.1, RNA1509_20980} {RNA1509_20980, RNA815_13562.1} |
Cumulative graph for MligTC455_23490
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -6.9 | 3.317 | 0.04402 | 0.50608 | |
| RegionR2 | 0.913 | 3.317 | 0.28737 | 0.67540 | |
| RegionR3 | 0.826 | 3.317 | 0.30661 | 0.84641 | |
| RegionR4 | 0.972 | 3.317 | 0.25362 | 0.55411 | |
| RegionR5 | 1.444 | 3.317 | 0.01952 | 0.09534 | |
| RegionR6 | 0.901 | 3.317 | 0.26898 | 0.85754 | |
| RegionR7 | 1.666 | 3.317 | 0.02460 | 0.29389 | |
| RegionR8 | 0.179 | 3.317 | 0.79037 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -0.215 | 3.317 | 0.99999 | 1.00000 | |
| RegenerationR2 | 0.179 | 3.317 | 0.64481 | 0.93367 | |
| RegenerationR3 | -0.184 | 3.317 | 0.69267 | 0.94544 | |
| RegenerationR4 | 0.411 | 3.317 | 0.39732 | 0.81162 | |
| RegenerationR5 | -0.008 | 3.317 | 0.98154 | 1.00000 | |
| RegenerationR6 | -0.333 | 3.317 | 0.51249 | 0.81523 | |
| RegenerationBL | 0.103 | 3.317 | 0.85981 | 1.00000 | |
| RegenerationTP | 0.062 | 3.317 | 0.92188 | 1.00000 |
Genes with expression patterns similar to MligTC455_23490
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_23490 | 367 | 7.64 | Mlig455_019595 | Neo: - Age: Up-Down-Down |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_019595 {REF} {Length: 1836} {NoTransDecoderORF} {RNA1509_20980} {RNA1310_8876.1, RNA1509_20980} {RNA1509_20980, RNA815_13562.1} | |
| 2. | MligTC455_37943 | 108 | 2.25 | Mlig455_070518 | Neo: - |
MACF1 | 0.967 | - | - | - | - | 0.967 | - | Mlig455_070518 {REF} {Length: 6776} {Pfam: SH3 domain [PF17902.3, score=36.7]} {Human: ENSG00000127603, MACF1, microtubule-actin crosslinking factor 1, [Score=63.5, Expect=4e-09]} {Mouse: ENSMUSG00000028649, Macf1, microtubule-actin crosslinking factor 1, [Score=62.0, Expect=8e-09]} {Dmel: FBgn0013733, shot, short stop, [Score=84.0, Expect=1e-15]} {Celegans: WBGene00006876, vab-10, VAB-10B protein, [Score=65.5, Expect=4e-10]} {Smed: dd_Smed_v6_10991_0_1, dd_Smed_v6_10991_0_1, [Score=73.2, Expect=1e-12]} {RNA1509_50153} {RNA1310_6543.1} {RNA815_6208} |
| 3. | MligTC455_34167 | 599 | 12.49 | Mlig455_056273 | Neo: Irradiation Age: Up-Down-Down Region-enriched R4: 1.787/0.00113 |
VAV2 | 0.958 | - | - | - | - | - | 0.958 | Mlig455_056273 {REF} {Length: 4422} {TRANSSPLICED} {Pfam: RhoGEF domain [PF00621.22, score=115.8]; SH2 domain [PF00017.26, score=61.7]; Calponin homology (CH) domain [PF00307.33, score=39.5]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=29.2]; Variant SH3 domain [PF07653.19, score=28.8]; CAMSAP CH domain [PF11971.10, score=24.8]; Variant SH3 domain [PF14604.8, score=21.9]} {Human: ENSG00000160293, VAV2, vav guanine nucleotide exchange factor 2, [RH, Score=332, Expect=2e-99]; ENSG00000134215, VAV3, vav guanine nucleotide exchange factor 3, [RH, Score=321, Expect=2e-95]} {Mouse: ENSMUSG00000009621, Vav2, vav 2 oncogene, [RH, Score=325, Expect=4e-97]; ENSMUSG00000033721, Vav3, vav 3 oncogene, [RH, Score=314, Expect=6e-93]} {Dmel: FBgn0040068, Vav, Vav guanine nucleotide exchange factor, [RH, Score=214, Expect=6e-58]} {Celegans: WBGene00006887, vav-1, [Score=206, Expect=1e-54]} {Smed: dd_Smed_v6_6109_0_1, dd_Smed_v6_6109_0_1, [RH, Score=297, Expect=7e-88]} {RNA1509_6656} {RNA1310_4823.2, RNA1509_6656} {RNA1509_6656, RNA815_4374} |
| 4. | MligTC455_32503 | 799 | 16.65 | Mlig455_043510 | Neo: - Age: - |
MVB12B | 0.954 | - | - | - | - | - | 0.954 | Mlig455_043510 {REF} {Length: 1898} {TRANSSPLICED} {Pfam: Multivesicular body subunit 12 [PF10240.11, score=197.6]} {Human: ENSG00000196814, MVB12B, multivesicular body subunit 12B, [RH, Score=112, Expect=8e-29]} {Mouse: ENSMUSG00000038740, Mvb12b, multivesicular body subunit 12B, [RH, Score=107, Expect=2e-27]} {Celegans: WBGene00015508, mvb-12, MVB (Yeast MultiVesicular Body sorting factor) related, [RH, Score=98.6, Expect=1e-24]} {Smed: dd_Smed_v6_3091_0_1, dd_Smed_v6_3091_0_1, [RH, Score=129, Expect=1e-36]} {RNA1509_14614, RNA1509_16107, RNA1509_27375, RNA1509_51898} {RNA1310_28185, RNA1509_14614, RNA1509_16107, RNA1509_27375, RNA1509_51898} {RNA1509_14614, RNA1509_16107, RNA1509_27375, RNA1509_51898, RNA815_6494} |
| 5. | MligTC455_51418 | 379 | 7.89 | Mlig455_064315, Mlig455_064347 | Neo: Neoblast Age: Up-Down-Down |
0.951 | - | - | - | - | - | 0.951 | Mlig455_064315 {REF} {Length: 1167} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_16248} {RNA1310_25939} {RNA815_11455} Mlig455_064347 {REF} {Length: 379} {NoTransDecoderORF} {RNA1509_16248} {RNA1310_25939} {RNA815_11455} |
Berezikov Lab - 2020-2021 © ERIBA