M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23707

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23707 22 0.46 Mlig455_000900

Neo: -

Age: -

 Mlig455_000900 {REF} {Length: 1320} {Pfam: GIY-YIG catalytic domain [PF01541.26, score=25.4]} {RNA1509_42704} {RNA1310_32613.1} {RNA815_12032.1}

Cumulative graph for MligTC455_23707

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.916 0.711 1.00000 1.00000
RegionR2 2.449 0.711 0.99993 1.00000
RegionR3 0.15 0.711 0.99994 1.00000
RegionR4 -2.777 0.711 0.99979 1.00000
RegionR5 -1.092 0.711 0.99988 1.00000
RegionR6 -0.447 0.711 0.99992 1.00000
RegionR7 1.252 0.711 0.99997 1.00000
RegionR8 2.381 0.711 0.99999 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.974 0.711 0.99978 1.00000
RegenerationR2 1.712 0.711 1.00000 1.00000
RegenerationR3 2.349 0.711 1.00000 1.00000
RegenerationR4 1.68 0.711 1.00000 1.00000
RegenerationR5 0.534 0.711 0.99963 1.00000
RegenerationR6 1.589 0.711 1.00000 1.00000
RegenerationBL -0.454 0.711 0.99989 1.00000
RegenerationTP -1.807 0.711 0.99993 1.00000


Genes with expression patterns similar to MligTC455_23707

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23707 22 0.46 Mlig455_000900

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_000900 {REF} {Length: 1320} {Pfam: GIY-YIG catalytic domain [PF01541.26, score=25.4]} {RNA1509_42704} {RNA1310_32613.1} {RNA815_12032.1}
2. MligTC455_10443 17 0.36 Mlig455_016163

Neo: -

Age: Up-Down-Up

 0.981 - - - - 0.981 - Mlig455_016163 {REF} {Length: 2701} {RNA1310_106588}
3. MligTC455_38931 5 0.1 Mlig455_016671, Mlig455_033918

Neo: -

Age: -

 PRR9 0.978 - - - - 0.978 -

Mlig455_016671 {REF} {Length: 657} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=44.3, Expect=7e-06]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=47.0, Expect=3e-06]} {RNA1310_29514}

Mlig455_033918 {REF} {Length: 658} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=49.3, Expect=1e-07]} {RNA1310_29514}
4. MligTC455_25022 32 0.66 Mlig455_006759

Neo: Int S/G2/M

Age: -

 0.976 - - - - 0.976 - Mlig455_006759 {REF} {Length: 776} {NoTransDecoderORF} {RNA1509_55535} {RNA1310_62687} {RNA815_43405}
5. MligTC455_13126 16 0.33 Mlig455_006139

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_006139 {REF} {Length: 2169} {NoTransDecoderORF} {RNA1509_46209} {RNA1310_76341} {RNA815_45428}
6. MligTC455_37483 65 1.35 Mlig455_039434

Neo: -

Age: Down-Up-Down

Regeneration-enriched R4: 9.467
Regeneration-enriched R5: 6.027

 0.974 - - - - 0.974 - Mlig455_039434 {REF} {Length: 5360} {RNA1310_7246} {RNA815_26161}
7. MligTC455_22613 61 1.28 Mlig455_027104

Neo: -

Age: -

 FYN 0.972 - - - - 0.972 - Mlig455_027104 {REF} {Length: 3199} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=253.8]; Protein kinase domain [PF00069.27, score=164.0]; SH3 domain [PF00018.30, score=35.8]; Variant SH3 domain [PF07653.19, score=34.4]; SH2 domain [PF00017.26, score=33.0]; Variant SH3 domain [PF14604.8, score=30.8]; Bacterial SH3 domain [PF08239.13, score=24.5]; Kinase-like [PF14531.8, score=18.6]; ABC1 atypical kinase-like domain [PF03109.18, score=18.3]} {Human: ENSG00000010810, FYN, FYN proto-oncogene, Src family tyrosine kinase, [Score=280, Expect=6e-87]; ENSG00000101336, HCK, HCK proto-oncogene, Src family tyrosine kinase, [Score=274, Expect=6e-85]; ENSG00000182866, LCK, LCK proto-oncogene, Src family tyrosine kinase, [Score=272, Expect=2e-84]; ENSG00000254087, LYN, LYN proto-oncogene, Src family tyrosine kinase, [Score=268, Expect=6e-83]} {Mouse: ENSMUSG00000019843, Fyn, Fyn proto-oncogene, [Score=280, Expect=5e-87]; ENSMUSG00000000409, Lck, lymphocyte protein tyrosine kinase, [Score=276, Expect=6e-86]; ENSMUSG00000042228, Lyn, LYN proto-oncogene, Src family tyrosine kinase, [Score=269, Expect=2e-83]; ENSMUSG00000014932, Yes1, YES proto-oncogene 1, Src family tyrosine kinase, [Score=266, Expect=7e-82]} {Dmel: FBgn0262733, Src64B, Src oncogene at 64B, [Score=271, Expect=6e-84]} {Celegans: WBGene00005077, src-1, Tyrosine protein-kinase src-1, [Score=278, Expect=2e-87]} {Smed: dd_Smed_v6_3363_0_1, dd_Smed_v6_3363_0_1, [Score=313, Expect=8e-101]} {RNA1509_37079} {RNA1310_14637} {RNA815_4860}
8. MligTC455_32086 24 0.49 Mlig455_040220

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_040220 {REF} {Length: 2508} {RNA1509_46209} {RNA1310_71924.2} {RNA815_20255}
9. MligTC455_39198 13 0.26 Mlig455_008470, Mlig455_008478, Mlig455_009924

Neo: -

Age: -

 0.972 - - - - 0.972 -

Mlig455_008470 {REF} {Length: 1982} {RNA1509_8399} {RNA1310_67344} {RNA815_51157}

Mlig455_008478 {REF} {Length: 1387} {RNA1509_8399} {RNA1310_67344} {RNA815_51157}

Mlig455_009924 {REF} {Length: 670} {RNA1509_8399} {RNA1310_67344} {RNA815_51157}
10. MligTC455_30886 48 1 Mlig455_009167, Mlig455_009178

Neo: -

Age: logFC(26M/2M)=-0.423

 0.97 - - - - 0.970 -

Mlig455_009167 {REF} {Length: 2411} {RNA1509_53360} {RNA1310_36756} {RNA815_25718}

Mlig455_009178 {REF} {Length: 2996} {RNA1509_53360} {RNA1310_10408.1} {RNA815_1194.1}
11. MligTC455_00431 10 0.21 Mlig455_062910

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_062910 {REF} {Length: 862} {RNA1509_15401} {RNA1310_104073} {RNA815_6960}
12. MligTC455_28331 23 0.48 Mlig455_057516

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_057516 {REF} {Length: 1069} {RNA1509_52975} {RNA1310_45589} {RNA815_54554}
13. MligTC455_42559 17 0.36 Mlig455_064128

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_064128 {REF} {Length: 1837} {Pfam: Glycine rich protein [PF12810.9, score=23.2]} {RNA1310_112308} {RNA815_32418}
14. MligTC455_12088 61 1.26 Mlig455_057931, Mlig455_057966

Neo: -

Age: -

 0.968 - - - - 0.968 -

Mlig455_057931 {REF} {Length: 396} {RNA1310_75258} {RNA815_44558}

Mlig455_057966 {REF} {Length: 396} {RNA1310_75258} {RNA815_44558}
15. MligTC455_27969 203 4.24 Mlig455_055219, Mlig455_055313

Neo: -

Age: -

 ADARB1 0.968 - - - - 0.968 -

Mlig455_055219 {REF} {Length: 3087} {TRANSSPLICED} {Pfam: Adenosine-deaminase (editase) domain [PF02137.20, score=288.8]; Double-stranded RNA binding motif [PF00035.28, score=44.8]} {Human: ENSG00000197381, ADARB1, adenosine deaminase, RNA specific B1, [RH, Score=346, Expect=9e-110]} {Mouse: ENSMUSG00000020262, Adarb1, adenosine deaminase, RNA-specific, B1, [RH, Score=358, Expect=3e-114]} {Dmel: FBgn0026086, Adar, Adenosine deaminase acting on RNA, [RH, Score=296, Expect=2e-91]} {Celegans: WBGene00000080, adr-2, Probable double-stranded RNA-specific adenosine deaminase, [RH, Score=184, Expect=2e-51]} {Smed: dd_Smed_v6_4538_0_1, dd_Smed_v6_4538_0_1, [RH, Score=235, Expect=5e-68]} {RNA1509_57256} {RNA1310_8624} {RNA815_8285}

Mlig455_055313 {REF} {Length: 2868} {TRANSSPLICED} {Pfam: Adenosine-deaminase (editase) domain [PF02137.20, score=289.4]; Double-stranded RNA binding motif [PF00035.28, score=44.8]} {Human: ENSG00000197381, ADARB1, adenosine deaminase, RNA specific B1, [RH, Score=347, Expect=5e-110]} {Mouse: ENSMUSG00000020262, Adarb1, adenosine deaminase, RNA-specific, B1, [RH, Score=356, Expect=1e-113]} {Dmel: FBgn0026086, Adar, Adenosine deaminase acting on RNA, [RH, Score=290, Expect=8e-89]} {Celegans: WBGene00000080, adr-2, Probable double-stranded RNA-specific adenosine deaminase, [RH, Score=184, Expect=3e-51]} {Smed: dd_Smed_v6_4538_0_1, dd_Smed_v6_4538_0_1, [RH, Score=236, Expect=3e-68]} {RNA1509_57256, RNA1509_57608} {RNA1310_8624, RNA1509_57256, RNA1509_57608} {RNA1509_57256, RNA1509_57608, RNA815_8285}
16. MligTC455_17225 6 0.12 Mlig455_039944

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_039944 {REF} {Length: 436} {NoTransDecoderORF} {RNA1509_58333} {RNA1310_7959.1} {RNA815_41251}
17. MligTC455_00291 4 0.08 Mlig455_041817

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_041817 {REF} {Length: 137} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_50573} {RNA1310_17892.1}
18. MligTC455_10397 13 0.28 Mlig455_030034

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_030034 {REF} {Length: 2324} {RNA1310_98311} {RNA815_5370}
19. MligTC455_26833 22 0.46 Mlig455_048301

Neo: -

Age: -

 OPLAH 0.963 - - - - 0.963 - Mlig455_048301 {REF} {Length: 4436} {Pfam: Hydantoinase B/oxoprolinase [PF02538.16, score=626.3]; Hydantoinase/oxoprolinase [PF01968.20, score=350.5]; Hydantoinase/oxoprolinase N-terminal region [PF05378.15, score=203.7]; Hydantoinase/oxoprolinase C-terminal domain [PF19278.1, score=36.1]} {Human: ENSG00000178814, OPLAH, 5-oxoprolinase, ATP-hydrolysing, [RH, Score=1454, Expect=0.0]} {Mouse: ENSMUSG00000022562, Oplah, 5-oxoprolinase (ATP-hydrolysing), [RH, Score=1424, Expect=0.0]} {Dmel: FBgn0034733, CG4752, [RH, Score=1391, Expect=0.0]} {Celegans: WBGene00021430, Y38F2AR.12, [RH, Score=1409, Expect=0.0]} {Smed: dd_Smed_v6_5008_0_1, dd_Smed_v6_5008_0_1, [Score=989, Expect=0.0]} {RNA1509_2948, RNA1509_37889} {RNA1310_1508.1, RNA1509_37889} {RNA1509_37889, RNA815_468}
20. MligTC455_36071 9 0.19 Mlig455_071163

Neo: -

Age: Up-Down-Up

 0.962 - - - - 0.962 - Mlig455_071163 {REF} {Length: 3109} {RNA1509_47127} {RNA1310_5110.1} {RNA815_2031.1}
21. MligTC455_36928 17 0.36 Mlig455_012324

Neo: -

Age: -

 TMEM26 0.96 - - - - 0.960 - Mlig455_012324 {REF} {Length: 3491} {Pfam: Transmembrane protein 26 [PF09772.11, score=279.2]} {Human: ENSG00000196932, TMEM26, transmembrane protein 26, [RH, Score=157, Expect=1e-42]} {Mouse: ENSMUSG00000060044, Tmem26, transmembrane protein 26, [RH, Score=148, Expect=2e-39]} {Dmel: FBgn0039429, CG14238, [RH, Score=214, Expect=1e-62]} {Celegans: WBGene00022469, Y119C1B.3, [RH, Score=162, Expect=4e-44]} {Smed: dd_Smed_v6_30929_0_1, dd_Smed_v6_30929_0_1, [RH, Score=266, Expect=2e-83]} {RNA1310_91076} {RNA815_52551}
22. MligTC455_27210 8 0.16 Mlig455_068156

Neo: -

Age: Up-Down-Down

 0.958 - - - - 0.958 - Mlig455_068156 {REF} {Length: 3525} {Pfam: Domain of unknown function (DUF3432) [PF11914.10, score=23.7]} {RNA1509_22012} {RNA1310_49079} {RNA815_25175.1}
23. MligTC455_37395 18 0.38 Mlig455_071006

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_071006 {REF} {Length: 898} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=31.2]} {RNA1310_17986} {RNA815_61383}
24. MligTC455_53738 469 9.77 Mlig455_038341, Mlig455_038349, Mlig455_038367, Mlig455_068286

Neo: -

Age: -

 0.957 - - - - 0.957 -

Mlig455_038341 {REF} {Length: 672} {RNA1310_69225} {RNA815_63432}

Mlig455_038349 {REF} {Length: 697} {RNA1310_69225} {RNA815_63432}

Mlig455_038367 {REF} {Length: 1012} {RNA1310_69225} {RNA815_63432}

Mlig455_068286 {REF} {Length: 1010} {RNA1310_69225} {RNA815_63432}
25. MligTC455_54747 11 0.22 Mlig455_034717

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_034717 {REF} {Length: 616} {Pfam: Inter-alpha-trypsin inhibitor heavy chain C-terminus [PF06668.14, score=20.8]}
26. MligTC455_06713 7 0.15 Mlig455_053256

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_053256 {REF} {Length: 357} {NoTransDecoderORF} {RNA1310_145656}
27. MligTC455_52503 11 0.22 Mlig455_006602

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_006602 {REF} {Length: 1452} {RNA1509_9393} {RNA1310_41685} {RNA815_52637}
28. MligTC455_00349 7 0.15 Mlig455_069175

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_069175 {REF} {Length: 639} {RNA1310_21320}
29. MligTC455_32534 166 3.46 Mlig455_034593, Mlig455_040890

Neo: -

Age: -

Region-enriched R4: 2.124/0.04916

 0.953 - - - - 0.953 -

Mlig455_034593 {REF} {Length: 1979} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_46555} {RNA1310_8675} {RNA815_3094.1}

Mlig455_040890 {REF} {Length: 980} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_23515} {RNA1310_8675} {RNA815_3094.1}
30. MligTC455_20910 10 0.22 Mlig455_039653

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_039653 {REF} {Length: 1234} {RNA1509_48033} {RNA1310_47692} {RNA815_51419}
31. MligTC455_32586 97 2.02 Mlig455_052753

Neo: Irradiation

Age: -

Region-enriched R5: 2.108/0.03498

 0.952 - - - - 0.952 - Mlig455_052753 {REF} {Length: 1463} {TRANSSPLICED} {RNA1509_48403} {RNA1310_44079, RNA1509_48403} {RNA1509_48403, RNA815_21852}
32. MligTC455_40054 19 0.4 Mlig455_016329

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_016329 {REF} {Length: 990} {NoTransDecoderORF} {RNA1310_133686}
33. MligTC455_13416 16 0.33 Mlig455_046199

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_046199 {REF} {Length: 168} {NoTransDecoderORF}
34. MligTC455_35730 22 0.47 Mlig455_068708

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_068708 {REF} {Length: 323} {NoTransDecoderORF} {RNA1310_109959}
35. MligTC455_01226 14 0.3 Mlig455_018203

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_018203 {REF} {Length: 673} {NoTransDecoderORF} {RNA1509_35533} {RNA1310_93416} {RNA815_17588}
36. MligTC455_01448 15 0.31 Mlig455_063614

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_063614 {REF} {Length: 27} {TRANSSPLICED} {NoTransDecoderORF}
37. MligTC455_23974 18 0.38 Mlig455_022922, Mlig455_055203

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=0.700

 0.95 - - - - 0.950 -

Mlig455_022922 {REF} {Length: 1992} {RNA1509_39040} {RNA1310_886.1, RNA1509_39040} {RNA1509_39040, RNA815_4579}

Mlig455_055203 {REF} {Length: 1177} {RNA1509_39040} {RNA1310_24363} {RNA815_4579}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA