M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_23974

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_23974 18 0.38 Mlig455_022922, Mlig455_055203

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=0.700

Mlig455_022922 {REF} {Length: 1992} {RNA1509_39040} {RNA1310_886.1, RNA1509_39040} {RNA1509_39040, RNA815_4579}

Mlig455_055203 {REF} {Length: 1177} {RNA1509_39040} {RNA1310_24363} {RNA815_4579}

Cumulative graph for MligTC455_23974

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.001 0.926 0.94002 1.00000
RegionR2 0.661 0.926 0.89087 1.00000
RegionR3 0.833 0.926 0.58215 1.00000
RegionR4 0.376 0.926 0.68995 0.98168
RegionR5 -2.152 0.926 0.39949 0.75645
RegionR6 -0.362 0.926 0.88294 1.00000
RegionR7 -0.675 0.926 0.80094 1.00000
RegionR8 2.32 0.926 0.43884 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.182 0.926 0.88418 1.00000
RegenerationR2 3.019 0.926 0.02254 0.24681
RegenerationR3 1.354 0.926 0.37119 0.78452
RegenerationR4 0.733 0.926 0.69247 0.95041
RegenerationR5 2.076 0.926 0.17758 0.60676
RegenerationR6 0.892 0.926 0.66627 0.90662
RegenerationBL -1.817 0.926 0.59969 0.94699
RegenerationTP -1.622 0.926 0.64135 0.98395


Genes with expression patterns similar to MligTC455_23974

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_23974 18 0.38 Mlig455_022922, Mlig455_055203

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=0.700

 1 - - - - 1.000 -

Mlig455_022922 {REF} {Length: 1992} {RNA1509_39040} {RNA1310_886.1, RNA1509_39040} {RNA1509_39040, RNA815_4579}

Mlig455_055203 {REF} {Length: 1177} {RNA1509_39040} {RNA1310_24363} {RNA815_4579}
2. MligTC455_27210 8 0.16 Mlig455_068156

Neo: -

Age: Up-Down-Down

 0.977 - - - - 0.977 - Mlig455_068156 {REF} {Length: 3525} {Pfam: Domain of unknown function (DUF3432) [PF11914.10, score=23.7]} {RNA1509_22012} {RNA1310_49079} {RNA815_25175.1}
3. MligTC455_37395 18 0.38 Mlig455_071006

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_071006 {REF} {Length: 898} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=31.2]} {RNA1310_17986} {RNA815_61383}
4. MligTC455_10121 35 0.73 Mlig455_063072

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_063072 {REF} {Length: 984} {RNA1509_30913} {RNA1310_4887.1} {RNA815_17996}
5. MligTC455_10443 17 0.36 Mlig455_016163

Neo: -

Age: Up-Down-Up

 0.972 - - - - 0.972 - Mlig455_016163 {REF} {Length: 2701} {RNA1310_106588}
6. MligTC455_20101 13 0.26 Mlig455_044305

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_044305 {REF} {Length: 403} {NoTransDecoderORF}
7. MligTC455_56292 12 0.25 Mlig455_022844

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_022844 {REF} {Length: 403} {NoTransDecoderORF}
8. MligTC455_26038 13 0.26 Mlig455_026530

Neo: -

Age: Up-Down-Up

 0.969 - - - - 0.969 - Mlig455_026530 {REF} {Length: 9189} {Pfam: Transcription factor BRX N-terminal domain [PF13713.8, score=20.0]} {RNA1509_12133} {RNA1310_11930} {RNA815_40541}
9. MligTC455_28052 115 2.4 Mlig455_031896, Mlig455_056076

Neo: -

Age: Up-Up-Down

 0.969 - - - - 0.969 -

Mlig455_031896 {REF} {Length: 3140} {TRANSSPLICED} {RNA1509_58475} {RNA1310_22436} {RNA815_11429}

Mlig455_056076 {REF} {Length: 4211} {TRANSSPLICED} {RNA1509_58475} {RNA1310_12129} {RNA815_7897}
10. MligTC455_13571 22 0.46 Mlig455_017396

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_017396 {REF} {Length: 2929} {Pfam: Domain of unknown function (DUF4834) [PF16118.7, score=23.0]; Transmembrane protein 51 [PF15345.8, score=21.9]; RNA polymerase I-specific transcription-initiation factor [PF10214.11, score=20.8]; Ctr copper transporter family [PF04145.17, score=20.5]; ARC105 or Med15 subunit of Mediator complex non-fungal [PF09606.12, score=19.0]; Mechanosensitive ion channel inner membrane domain 1 [PF12794.9, score=17.5]} {RNA1310_13412} {RNA815_37792}
11. MligTC455_12977 13 0.27 Mlig455_005226

Neo: -

Age: -

Region-enriched R2: 10.697/0.00007

 0.964 - - - - 0.964 - Mlig455_005226 {REF} {Length: 2688} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=36.1]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=20.7]} {Smed: dd_Smed_v6_47269_0_1, dd_Smed_v6_47269_0_1, [RH, Score=89.0, Expect=1e-20]} {RNA1310_108699}
12. MligTC455_10980 10 0.2 Mlig455_022684

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_022684 {REF} {Length: 184} {NoTransDecoderORF} {RNA1509_49089} {RNA1310_64291}
13. MligTC455_25022 32 0.66 Mlig455_006759

Neo: Int S/G2/M

Age: -

 0.96 - - - - 0.960 - Mlig455_006759 {REF} {Length: 776} {NoTransDecoderORF} {RNA1509_55535} {RNA1310_62687} {RNA815_43405}
14. MligTC455_04227 22 0.45 Mlig455_061453

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_061453 {REF} {Length: 2038} {Pfam: Glycine rich protein [PF12810.9, score=24.7]} {RNA1509_28715} {RNA1310_109445}
15. MligTC455_20239 14 0.29 Mlig455_054378

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_054378 {REF} {Length: 1875} {RNA1509_52273} {RNA1310_84069} {RNA815_52433}
16. MligTC455_32523 45 0.93 Mlig455_057683

Neo: -

Age: Down-Down-Up

 NR2E1 0.958 - - - - 0.958 - Mlig455_057683 {REF} {Length: 3117} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=84.9]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=46.7]} {Human: ENSG00000112333, NR2E1, nuclear receptor subfamily 2 group E member 1, [RH, Score=201, Expect=4e-60]} {Mouse: ENSMUSG00000019803, Nr2e1, nuclear receptor subfamily 2, group E, member 1, [RH, Score=199, Expect=7e-60]} {Dmel: FBgn0003720, tll, tailless, [Score=165, Expect=2e-46]} {Celegans: WBGene00003657, nhr-67, Nuclear hormone receptor family member nhr-67, [Score=151, Expect=2e-41]} {Smed: dd_Smed_v6_21347_0_1, dd_Smed_v6_21347_0_1, [Score=152, Expect=3e-42]} {RNA1509_22720} {RNA1310_16022, RNA1509_22720} {RNA1509_22720, RNA815_25885}
17. MligTC455_40054 19 0.4 Mlig455_016329

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_016329 {REF} {Length: 990} {NoTransDecoderORF} {RNA1310_133686}
18. MligTC455_57090 4 0.08 Mlig455_008141

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_008141 {REF} {Length: 667} {Pfam: Poxvirus A32 protein [PF04665.14, score=19.2]} {RNA1509_49894} {RNA1310_30281.1} {RNA815_16288}
19. MligTC455_13352 10 0.2 Mlig455_001562

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_001562 {REF} {Length: 2447} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=137.8]} {Smed: dd_Smed_v6_16274_0_1, dd_Smed_v6_16274_0_1, [Score=73.9, Expect=1e-13]} {RNA1310_72837}
20. MligTC455_13326 11 0.22 Mlig455_042702

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_042702 {REF} {Length: 4591} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=136.7]} {Smed: dd_Smed_v6_37545_0_1, dd_Smed_v6_37545_0_1, [Score=56.6, Expect=2e-08]} {RNA1509_30877} {RNA1310_43502} {RNA815_38744}
21. MligTC455_13573 9 0.19 Mlig455_030922

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_030922 {REF} {Length: 3038} {Pfam: ARC105 or Med15 subunit of Mediator complex non-fungal [PF09606.12, score=20.0]} {RNA1310_13412} {RNA815_21127}
22. MligTC455_16716 5 0.1 Mlig455_016129

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_016129 {REF} {Length: 1870} {RNA1310_142301}
23. MligTC455_11439 36 0.76 Mlig455_030893

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_030893 {REF} {Length: 845} {RNA1509_54643} {RNA1310_17365} {RNA815_7880}
24. MligTC455_23707 22 0.46 Mlig455_000900

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_000900 {REF} {Length: 1320} {Pfam: GIY-YIG catalytic domain [PF01541.26, score=25.4]} {RNA1509_42704} {RNA1310_32613.1} {RNA815_12032.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA