TomoSeq data search

Data search

Results for MligTC455_24088

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_24088

1082

22.53

Mlig455_017398, Mlig455_030918

Neo: -

Age: -

Regeneration-downregulated TP: -2.327

Regeneration-depleted TP: -2.327

CBS

Mlig455_017398 {REF} {Length: 2236} {TRANSSPLICED} {Pfam: Pyridoxal-phosphate dependent enzyme [PF00291.27, score=216.9]; CBS domain [PF00571.30, score=48.7]} {Human: ENSG00000160200, CBS, cystathionine-beta-synthase, [Score=593, Expect=0.0]; ENSG00000274276, CBSL, cystathionine-beta-synthase like, [Score=593, Expect=0.0]} {Mouse: ENSMUSG00000024039, Cbs, cystathionine beta-synthase, [Score=598, Expect=0.0]} {Dmel: FBgn0031148, Cbs, centrosomin's beautiful sister, [RH, Score=442, Expect=2e-151]} {Celegans: WBGene00013866, cbs-1, Cystathionine Beta-Synthase, [RH, Score=365, Expect=6e-119]} {Smed: dd_Smed_v6_1585_0_1, dd_Smed_v6_1585_0_1, [RH, Score=642, Expect=0.0]} {RNA1509_32341} {RNA1310_10466.1} {RNA815_2644.1}

Mlig455_030918 {REF} {Length: 2927} {TRANSSPLICED} {Pfam: Pyridoxal-phosphate dependent enzyme [PF00291.27, score=199.2]; CBS domain [PF00571.30, score=49.2]} {Human: ENSG00000160200, CBS, cystathionine-beta-synthase, [Score=557, Expect=0.0]; ENSG00000274276, CBSL, cystathionine-beta-synthase like, [Score=557, Expect=0.0]} {Mouse: ENSMUSG00000024039, Cbs, cystathionine beta-synthase, [Score=558, Expect=0.0]} {Dmel: FBgn0031148, Cbs, centrosomin's beautiful sister, [Score=409, Expect=9e-139]} {Celegans: WBGene00013866, cbs-1, Cystathionine Beta-Synthase, [Score=335, Expect=4e-108]} {Smed: dd_Smed_v6_1585_0_1, dd_Smed_v6_1585_0_1, [Score=603, Expect=0.0]} {RNA1509_32341} {RNA1310_10466.1} {RNA815_2644.1}

Cumulative graph for MligTC455_24088

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.975	4.761	0.30635	0.95517
RegionR2	0.197	4.761	0.64248	0.97977
RegionR3	-0.441	4.761	0.20591	0.74585
RegionR4	-0.093	4.761	0.81707	1.00000
RegionR5	0.262	4.761	0.38913	0.74490
RegionR6	0.202	4.761	0.55293	1.00000
RegionR7	0.366	4.761	0.35722	0.99386
RegionR8	0.482	4.761	0.31106	0.94357

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-2.299	4.761	0.24137	0.96582
RegenerationR2	-0.328	4.761	0.35777	0.78759
RegenerationR3	0.25	4.761	0.53765	0.87602
RegenerationR4	-0.365	4.761	0.36468	0.78998
RegenerationR5	-0.842	4.761	0.02503	0.26943
RegenerationR6	-0.1	4.761	0.79296	0.97366
RegenerationBL	0.427	4.761	0.27645	0.63667
RegenerationTP	-2.327	4.761	0.00004	0.00654	Specific for TP: -2.327

Genes with expression patterns similar to MligTC455_24088

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_24088	1082	22.53	Mlig455_017398, Mlig455_030918	Neo: - Age: - Regeneration-downregulated TP: -2.327 Regeneration-depleted TP: -2.327	CBS	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_017398 {REF} {Length: 2236} {TRANSSPLICED} {Pfam: Pyridoxal-phosphate dependent enzyme [PF00291.27, score=216.9]; CBS domain [PF00571.30, score=48.7]} {Human: ENSG00000160200, CBS, cystathionine-beta-synthase, [Score=593, Expect=0.0]; ENSG00000274276, CBSL, cystathionine-beta-synthase like, [Score=593, Expect=0.0]} {Mouse: ENSMUSG00000024039, Cbs, cystathionine beta-synthase, [Score=598, Expect=0.0]} {Dmel: FBgn0031148, Cbs, centrosomin's beautiful sister, [RH, Score=442, Expect=2e-151]} {Celegans: WBGene00013866, cbs-1, Cystathionine Beta-Synthase, [RH, Score=365, Expect=6e-119]} {Smed: dd_Smed_v6_1585_0_1, dd_Smed_v6_1585_0_1, [RH, Score=642, Expect=0.0]} {RNA1509_32341} {RNA1310_10466.1} {RNA815_2644.1} Mlig455_030918 {REF} {Length: 2927} {TRANSSPLICED} {Pfam: Pyridoxal-phosphate dependent enzyme [PF00291.27, score=199.2]; CBS domain [PF00571.30, score=49.2]} {Human: ENSG00000160200, CBS, cystathionine-beta-synthase, [Score=557, Expect=0.0]; ENSG00000274276, CBSL, cystathionine-beta-synthase like, [Score=557, Expect=0.0]} {Mouse: ENSMUSG00000024039, Cbs, cystathionine beta-synthase, [Score=558, Expect=0.0]} {Dmel: FBgn0031148, Cbs, centrosomin's beautiful sister, [Score=409, Expect=9e-139]} {Celegans: WBGene00013866, cbs-1, Cystathionine Beta-Synthase, [Score=335, Expect=4e-108]} {Smed: dd_Smed_v6_1585_0_1, dd_Smed_v6_1585_0_1, [Score=603, Expect=0.0]} {RNA1509_32341} {RNA1310_10466.1} {RNA815_2644.1}
2.	MligTC455_24087	548	11.41	Mlig455_017476	Neo: - Age: -	CBSL	5.649	0.968	0.870	0.974	0.986	0.957	0.894	Mlig455_017476 {REF} {Length: 2130} {TRANSSPLICED} {Pfam: Pyridoxal-phosphate dependent enzyme [PF00291.27, score=219.8]; CBS domain [PF00571.30, score=48.5]} {Human: ENSG00000274276, CBSL, cystathionine-beta-synthase like, [RH, Score=619, Expect=0.0]; ENSG00000160200, CBS, cystathionine-beta-synthase, [RH, Score=619, Expect=0.0]} {Mouse: ENSMUSG00000024039, Cbs, cystathionine beta-synthase, [RH, Score=622, Expect=0.0]} {Dmel: FBgn0031148, Cbs, centrosomin's beautiful sister, [RH, Score=452, Expect=9e-155]} {Celegans: WBGene00013866, cbs-1, Cystathionine Beta-Synthase, [RH, Score=370, Expect=9e-121]} {Smed: dd_Smed_v6_1585_0_1, dd_Smed_v6_1585_0_1, [RH, Score=659, Expect=0.0]} {RNA1509_32341} {RNA1310_10466.1} {RNA815_2644.1}
3.	MligTC455_51681	762	15.87	Mlig455_009904	Neo: - Age: - Regeneration-upregulated BL: 1.809 Regeneration-enriched BL: 1.809	YBX3	2.579	-	-	-	0.806	0.819	0.954	Mlig455_009904 {REF} {Length: 3925} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=92.6]} {Human: ENSG00000060138, YBX3, Y-box binding protein 3, [RH, Score=161, Expect=2e-47]; ENSG00000065978, YBX1, Y-box binding protein 1, [RH, Score=157, Expect=2e-45]; ENSG00000006047, YBX2, Y-box binding protein 2, [RH, Score=153, Expect=2e-43]} {Mouse: ENSMUSG00000030189, Ybx3, Y box protein 3, [RH, Score=162, Expect=8e-48]; ENSMUSG00000028639, Ybx1, Y box protein 1, [RH, Score=157, Expect=1e-45]} {Dmel: FBgn0022959, yps, ypsilon schachtel, [RH, Score=154, Expect=2e-44]} {Celegans: WBGene00000472, cey-1, C. Elegans Y-box, [RH, Score=146, Expect=4e-43]} {Smed: dd_Smed_v6_25570_0_1, dd_Smed_v6_25570_0_1, [Score=162, Expect=1e-47]} {RNA1509_14234, RNA1509_43002} {RNA1310_16756, RNA1509_14234} {RNA1509_14234, RNA815_19171.1}
4.	MligTC455_26129	210	4.36	Mlig455_009377	Neo: - Age: -		1.763	-	-	0.813	-	0.950	-	Mlig455_009377 {REF} {Length: 4183} {tRNA: Val(AAC),pseudo, score=28.6} {Pfam: Cysteine rich repeat [PF02363.21, score=20.8]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=81.3, Expect=2e-16]} {Celegans: WBGene00018026, F35A5.4, [Score=73.9, Expect=2e-14]} {RNA1509_46710} {RNA1310_29730} {RNA815_15860}
5.	MligTC455_30512	296	6.16	Mlig455_057485	Neo: - Age: -	CPNE8	1.682	0.704	-	-	-	0.978	-	Mlig455_057485 {REF} {Length: 5002} {TRANSSPLICED} {Pfam: Copine [PF07002.18, score=261.8]; C2 domain [PF00168.32, score=88.0]; vWA found in TerF C terminus [PF10138.11, score=30.8]} {Human: ENSG00000139117, CPNE8, copine 8, [RH, Score=491, Expect=2e-167]; ENSG00000124772, CPNE5, copine 5, [RH, Score=475, Expect=5e-161]; ENSG00000085719, CPNE3, copine 3, [RH, Score=473, Expect=8e-161]; ENSG00000214078, CPNE1, copine 1, [RH, Score=467, Expect=2e-158]} {Mouse: ENSMUSG00000052560, Cpne8, copine VIII, [RH, Score=489, Expect=8e-167]; ENSMUSG00000024008, Cpne5, copine V, [RH, Score=480, Expect=5e-163]; ENSMUSG00000028228, Cpne3, copine III, [RH, Score=479, Expect=1e-163]} {Celegans: WBGene00012128, nra-1, Nicotinic receptor-associated protein 1, [RH, Score=383, Expect=3e-125]} {Smed: dd_Smed_v6_2149_0_1, dd_Smed_v6_2149_0_1, [RH, Score=544, Expect=0.0]} {RNA1509_30376} {RNA1310_21877.1} {RNA815_8974}
6.	MligTC455_23447	435	9.06	Mlig455_035033	Neo: - Age: Up-Down-Down	CC2D2A	0.966	-	-	-	0.966	-	-	Mlig455_035033 {REF} {Length: 5525} {TRANSSPLICED} {Pfam: CC2D2A N-terminal C2 domain [PF15625.8, score=58.2]; C2 domain [PF00168.32, score=36.8]; Family of unknown function (DUF5523) [PF17661.3, score=33.5]} {Human: ENSG00000048342, CC2D2A, coiled-coil and C2 domain containing 2A, [RH, Score=397, Expect=1e-113]} {Mouse: ENSMUSG00000039765, Cc2d2a, coiled-coil and C2 domain containing 2A, [RH, Score=394, Expect=9e-113]} {Dmel: FBgn0263113, Cc2d2a, Coiled-coil and C2 domain containing 2A, [RH, Score=117, Expect=4e-26]} {Celegans: WBGene00010642, mks-6, MecKel-Gruber Syndrome (MKS) homolog, [RH, Score=88.6, Expect=3e-17]} {Smed: dd_Smed_v6_11189_0_1, dd_Smed_v6_11189_0_1, [RH, Score=460, Expect=9e-136]} {RNA1509_46603} {RNA1310_6995.1} {RNA815_316.1}
7.	MligTC455_30427	370	7.7	Mlig455_014862, Mlig455_014902, Mlig455_014903, Mlig455_024518, Mlig455_052526	Neo: - Age: Up-Down-Up		0.963	-	-	-	0.963	-	-	Mlig455_014862 {REF} {Length: 4961} {Pfam: Pentapeptide repeats (9 copies) [PF13599.8, score=39.6]} {RNA1509_13222} {RNA1310_59923} {RNA815_11419.1} Mlig455_014902 {REF} {Length: 149} {Pfam: NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial [PF15880.7, score=23.5]} {RNA1509_57968} Mlig455_014903 {REF} {Length: 149} {Pfam: NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial [PF15880.7, score=23.5]} {RNA1509_57968} Mlig455_024518 {REF} {Length: 4185} {NoTransDecoderORF} {RNA1509_3398} {RNA1310_24716.1} {RNA815_11419.1} Mlig455_052526 {REF} {Length: 804} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_41739} {RNA815_34613}
8.	MligTC455_16427	1100	22.91	Mlig455_004703, Mlig455_004776, Mlig455_067254	Neo: - Age: - Regeneration-upregulated BL: 1.571 Regeneration-enriched BL: 1.571	PIWIL1	0.958	-	-	-	-	0.958	-	Mlig455_004703 {REF} {Length: 678} {NoTransDecoderORF} {RNA1509_38018} {RNA1310_63004} {RNA815_29902} Mlig455_004776 {REF} {Length: 4091} {TRANSSPLICED} {Pfam: Piwi domain [PF02171.19, score=260.5]; PAZ domain [PF02170.24, score=99.8]; Argonaute linker 1 domain [PF08699.12, score=31.3]} {Human: ENSG00000125207, PIWIL1, piwi like RNA-mediated gene silencing 1, [RH, Score=563, Expect=0.0]; ENSG00000275051, PIWIL1, piwi like RNA-mediated gene silencing 1, [RH, Score=563, Expect=0.0]} {Mouse: ENSMUSG00000029423, Piwil1, piwi-like RNA-mediated gene silencing 1, [RH, Score=551, Expect=0.0]} {Dmel: FBgn0250816, AGO3, Argonaute 3, [RH, Score=468, Expect=1e-151]} {Celegans: WBGene00004178, prg-1, Piwi-like protein, [RH, Score=415, Expect=9e-132]} {Smed: dd_Smed_v6_1258_0_1, dd_Smed_v6_1258_0_1, [Score=488, Expect=5e-158]} {RNA1509_12087, RNA1509_32406, RNA1509_3572, RNA1509_47657, RNA1509_56648} {RNA1310_5159, RNA1509_12087, RNA1509_32406, RNA1509_3572, RNA1509_47657, RNA1509_56648} {RNA1509_12087, RNA1509_32406, RNA1509_3572, RNA1509_47657, RNA1509_56648, RNA815_1776} Mlig455_067254 {REF} {Length: 725} {Pfam: Piwi domain [PF02171.19, score=171.8]} {Human: ENSG00000275051, PIWIL1, piwi like RNA-mediated gene silencing 1, [Score=192, Expect=9e-56]; ENSG00000125207, PIWIL1, piwi like RNA-mediated gene silencing 1, [Score=192, Expect=9e-56]} {Mouse: ENSMUSG00000029423, Piwil1, piwi-like RNA-mediated gene silencing 1, [Score=189, Expect=4e-55]} {Dmel: FBgn0250816, AGO3, Argonaute 3, [Score=190, Expect=2e-55]} {Celegans: WBGene00004179, prg-2, Piwi-like protein, [Score=165, Expect=5e-47]} {Smed: dd_Smed_v6_756_0_1, dd_Smed_v6_756_0_1, [Score=174, Expect=5e-50]} {RNA1509_56648} {RNA1310_5159} {RNA815_1776}
9.	MligTC455_27513	326	6.8	Mlig455_027937	Neo: - Age: logFC(26M/2M)=-0.593	MAP3K4	0.955	-	-	-	0.955	-	-	Mlig455_027937 {REF} {Length: 2685} {Pfam: Protein kinase domain [PF00069.27, score=165.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=123.4]; Ankyrin repeats (3 copies) [PF12796.9, score=78.4]; Ankyrin repeats (many copies) [PF13637.8, score=58.3]; Ankyrin repeat [PF13606.8, score=56.2]; Ankyrin repeats (many copies) [PF13857.8, score=46.5]; Ankyrin repeat [PF00023.32, score=40.7]; Fungal protein kinase [PF17667.3, score=27.5]} {Human: ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=132, Expect=4e-31]} {Mouse: ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=128, Expect=6e-30]; ENSMUSG00000028862, Map3k6, mitogen-activated protein kinase kinase kinase 6, [Score=123, Expect=2e-28]; ENSMUSG00000031303, Map3k15, mitogen-activated protein kinase kinase kinase 15, [Score=122, Expect=3e-28]} {Dmel: FBgn0024329, Mekk1, [Score=126, Expect=2e-29]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=137, Expect=4e-33]} {Smed: dd_Smed_v6_4849_0_1, dd_Smed_v6_4849_0_1, [Score=112, Expect=2e-25]} {RNA1509_27731} {RNA1310_10050} {RNA815_9449.1}

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