M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_24919

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_24919 8 0.17 Mlig455_011387

Neo: -

Age: -

 Mlig455_011387 {REF} {Length: 977} {NoTransDecoderORF} {RNA1310_88183}

Cumulative graph for MligTC455_24919

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.079 0.567 1.00000 1.00000
RegionR2 0.45 0.567 1.00000 1.00000
RegionR3 -0.086 0.567 1.00000 1.00000
RegionR4 -0.817 0.567 0.99966 1.00000
RegionR5 -0.473 0.567 1.00000 1.00000
RegionR6 -0.266 0.567 1.00000 1.00000
RegionR7 0.351 0.567 1.00000 1.00000
RegionR8 0.762 0.567 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.322 0.567 0.99992 1.00000
RegenerationR2 3.124 0.567 0.44202 0.84107
RegenerationR3 -0.177 0.567 1.00000 1.00000
RegenerationR4 1.212 0.567 0.71316 0.95846
RegenerationR5 -0.064 0.567 1.00000 1.00000
RegenerationR6 -0.058 0.567 0.99997 1.00000
RegenerationBL 2.998 0.567 0.72765 1.00000
RegenerationTP -0.397 0.567 1.00000 1.00000


Genes with expression patterns similar to MligTC455_24919

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_24919 8 0.17 Mlig455_011387

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_011387 {REF} {Length: 977} {NoTransDecoderORF} {RNA1310_88183}
2. MligTC455_50848 30 0.62 Mlig455_025590

Neo: -

Age: -

 0.989 - - - - 0.989 - Mlig455_025590 {REF} {Length: 1790} {RNA1310_61983} {RNA815_39354}
3. MligTC455_36762 10 0.21 Mlig455_057461

Neo: -

Age: -

 0.988 - - - - 0.988 - Mlig455_057461 {REF} {Length: 1806} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=24.8]} {Smed: dd_Smed_v6_38501_0_1, dd_Smed_v6_38501_0_1, [Score=155, Expect=6e-43]}
4. MligTC455_17809 89 1.85 Mlig455_066801, Mlig455_066865

Neo: -

Age: -

 0.986 - - - - 0.986 -

Mlig455_066801 {REF} {Length: 1886} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=41.4]} {Smed: dd_Smed_v6_54490_0_1, dd_Smed_v6_54490_0_1, [Score=46.2, Expect=3e-06]} {RNA1310_22785} {RNA815_13697}

Mlig455_066865 {REF} {Length: 1886} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=41.2]} {Smed: dd_Smed_v6_54490_0_1, dd_Smed_v6_54490_0_1, [Score=46.6, Expect=3e-06]} {RNA1310_22785} {RNA815_13697}
5. MligTC455_11636 7 0.15 Mlig455_067475

Neo: -

Age: -

 0.977 - - - - 0.977 - Mlig455_067475 {REF} {Length: 565} {NoTransDecoderORF} {RNA1509_26331} {RNA1310_7323} {RNA815_2947}
6. MligTC455_15240 11 0.23 Mlig455_051415

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_051415 {REF} {Length: 607} {NoTransDecoderORF}
7. MligTC455_33441 27 0.55 Mlig455_068537

Neo: -

Age: Down-Up-Down

 GRID1 0.97 - - - - 0.970 - Mlig455_068537 {REF} {Length: 3049} {Pfam: Ligand-gated ion channel [PF00060.28, score=77.4]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=46.3]; Receptor family ligand binding region [PF01094.30, score=43.7]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=38.3]} {Human: ENSG00000182771, GRID1, glutamate ionotropic receptor delta type subunit 1, [Score=156, Expect=6e-39]} {Mouse: ENSMUSG00000041078, Grid1, glutamate receptor, ionotropic, delta 1, [Score=153, Expect=1e-37]} {Dmel: FBgn0038837, CG3822, [Score=125, Expect=4e-29]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=117, Expect=8e-27]} {Smed: dd_Smed_v6_21015_0_1, dd_Smed_v6_21015_0_1, [Score=259, Expect=3e-78]} {RNA1310_13880.2} {RNA815_12458}
8. MligTC455_20956 77 1.6 Mlig455_008761

Neo: -

Age: Up-Down-Down

Region-enriched R8: 3.712/0.03504

 GLRA3 0.969 - - - - 0.969 - Mlig455_008761 {REF} {Length: 3739} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=146.1]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=124.8]} {Human: ENSG00000145451, GLRA3, glycine receptor alpha 3, [RH, Score=344, Expect=7e-114]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [RH, Score=338, Expect=2e-111]} {Mouse: ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [RH, Score=342, Expect=5e-113]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [RH, Score=336, Expect=7e-111]} {Dmel: FBgn0024963, GluClalpha, [RH, Score=291, Expect=2e-93]} {Celegans: WBGene00001593, glc-3, Glutamate-gated ChLoride channel; Glutamate-gated chloride channel subunit, [RH, Score=256, Expect=7e-80]} {Smed: dd_Smed_v6_10794_0_1, dd_Smed_v6_10794_0_1, [Score=253, Expect=1e-78]} {RNA1310_38552.1} {RNA815_6481}
9. MligTC455_21228 91 1.89 Mlig455_010973

Neo: -

Age: -

 NOS1AP 0.966 - - - - 0.966 - Mlig455_010973 {REF} {Length: 3372} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=84.5]} {Human: ENSG00000198929, NOS1AP, nitric oxide synthase 1 adaptor protein, [RH, Score=210, Expect=2e-61]} {Mouse: ENSMUSG00000038473, Nos1ap, nitric oxide synthase 1 (neuronal) adaptor protein, [RH, Score=209, Expect=5e-61]} {Dmel: FBgn0261555, CG42673, [RH, Score=209, Expect=2e-59]} {Celegans: WBGene00001116, dyc-1, Dystrophin-like protein 1, [Score=205, Expect=2e-57]} {Smed: dd_Smed_v6_13377_0_1, dd_Smed_v6_13377_0_1, [Score=218, Expect=5e-64]} {RNA1509_56125} {RNA1310_16551, RNA1509_56125} {RNA1509_56125, RNA815_36051}
10. MligTC455_19759 18 0.39 Mlig455_002694, Mlig455_002710

Neo: -

Age: -

 0.964 - - - - 0.964 -

Mlig455_002694 {REF} {Length: 1408} {RNA1310_38437} {RNA815_40458}

Mlig455_002710 {REF} {Length: 1745} {RNA1310_38437} {RNA815_40458}
11. MligTC455_54100 57 1.18 Mlig455_036019, Mlig455_036108

Neo: -

Age: -

 ANGPTL2 0.961 - - - - 0.961 -

Mlig455_036019 {REF} {Length: 1076} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=137.0]} {Human: ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=121, Expect=3e-34]; ENSG00000160339, FCN2, ficolin 2, [Score=119, Expect=7e-33]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=117, Expect=9e-31]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=122, Expect=2e-32]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=121, Expect=3e-32]; ENSMUSG00000038742, Angptl6, angiopoietin-like 6, [Score=116, Expect=2e-30]} {Dmel: FBgn0003326, sca, scabrous, [Score=112, Expect=1e-28]} {Celegans: WBGene00017013, ensh-1, [Score=48.9, Expect=5e-07]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=114, Expect=1e-29]} {RNA1509_26827} {RNA1310_31840} {RNA815_17173.1}

Mlig455_036108 {REF} {Length: 1344} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=152.2]} {Human: ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=134, Expect=2e-34]; ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=133, Expect=4e-34]; ENSG00000160339, FCN2, ficolin 2, [Score=132, Expect=9e-35]; ENSG00000130720, FIBCD1, fibrinogen C domain containing 1, [Score=129, Expect=1e-32]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=137, Expect=1e-35]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=134, Expect=2e-34]} {Dmel: FBgn0003326, sca, scabrous, [RH, Score=124, Expect=1e-30]} {Smed: dd_Smed_v6_74244_0_1, dd_Smed_v6_74244_0_1, [Score=47.4, Expect=8e-07]} {RNA1509_26827} {RNA1310_33619.1} {RNA815_17173.3}
12. MligTC455_47860 25 0.51 Mlig455_004939, Mlig455_019718

Neo: -

Age: -

 0.96 - - - - 0.960 -

Mlig455_004939 {REF} {Length: 801} {RNA1310_20293} {RNA815_54505}

Mlig455_019718 {REF} {Length: 1114} {Pfam: EbsA-like protein [PF17255.4, score=19.9]} {RNA1310_20293} {RNA815_54505}
13. MligTC455_45221 50 1.04 Mlig455_057618, Mlig455_070815

Neo: -

Age: -

 0.959 - - - - 0.959 -

Mlig455_057618 {REF} {Length: 1114} {TRANSSPLICED} {Pfam: THAP domain [PF05485.14, score=32.4]} {RNA1310_77195} {RNA815_47791}

Mlig455_070815 {REF} {Length: 249} {NoTransDecoderORF} {RNA1310_77195} {RNA815_47791}
14. MligTC455_28598 102 2.13 Mlig455_057552

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_057552 {REF} {Length: 3851} {TRANSSPLICED} {RNA1509_60109} {RNA1310_21727} {RNA815_11299}
15. MligTC455_19995 121 2.53 Mlig455_062804

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_062804 {REF} {Length: 1017} {NoTransDecoderORF} {RNA1509_33903} {RNA1310_35943} {RNA815_44308}
16. MligTC455_33725 46 0.96 Mlig455_059862

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_059862 {REF} {Length: 2526} {tRNA: Asp(GTC), score=67.3} {RNA1310_22634} {RNA815_27671}
17. MligTC455_37305 39 0.81 Mlig455_029478

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.597

 0.954 - - - - 0.954 - Mlig455_029478 {REF} {Length: 3097} {Smed: dd_Smed_v6_9825_0_1, dd_Smed_v6_9825_0_1, [Score=53.9, Expect=2e-07]} {RNA1509_42508, RNA1509_53631} {RNA1310_33865.1, RNA1509_42508, RNA1509_53631} {RNA1509_42508, RNA1509_53631, RNA815_36519}
18. MligTC455_46229 215 4.48 Mlig455_022523, Mlig455_022563

Neo: -

Age: -

Region-enriched R2: 5.024/0.00529

 0.954 - - - - 0.954 -

Mlig455_022523 {REF} {Length: 2044} {RNA1310_42787} {RNA815_17352}

Mlig455_022563 {REF} {Length: 1991} {RNA1310_42787} {RNA815_17352}
19. MligTC455_08352 14 0.29 Mlig455_017214

Neo: Irradiation

Age: Down-Down-Up

 APEX1 0.953 - - - - 0.953 - Mlig455_017214 {REF} {Length: 1458} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=69.4]; Endonuclease-reverse transcriptase [PF14529.8, score=24.9]} {Human: ENSG00000100823, APEX1, apurinic/apyrimidinic endodeoxyribonuclease 1, [RH, Score=305, Expect=2e-100]} {Mouse: ENSMUSG00000035960, Apex1, apurinic/apyrimidinic endonuclease 1, [RH, Score=310, Expect=1e-102]} {Dmel: FBgn0004584, Rrp1, Recombination repair protein 1, [RH, Score=302, Expect=3e-95]} {Celegans: WBGene00001372, exo-3, DNA-(apurinic or apyrimidinic site) lyase, [RH, Score=238, Expect=3e-75]} {Smed: dd_Smed_v6_11417_0_1, dd_Smed_v6_11417_0_1, [RH, Score=338, Expect=8e-114]} {RNA1509_16413} {RNA1310_25554} {RNA815_11218.1}
20. MligTC455_41295 203 4.23 Mlig455_007836

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.543

 0.953 - - - - 0.953 - Mlig455_007836 {REF} {Length: 2189} {RNA1509_59262} {RNA1310_31928, RNA1509_59262} {RNA1509_59262, RNA815_32415}
21. MligTC455_53072 27 0.57 Mlig455_059541

Neo: -

Age: -

 CASK 0.953 - - - - 0.953 - Mlig455_059541 {REF} {Length: 5770} {Pfam: Guanylate kinase [PF00625.23, score=201.8]; Protein kinase domain [PF00069.27, score=148.2]; L27 domain [PF02828.18, score=62.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=62.1]; PDZ domain [PF00595.26, score=57.5]; PDZ domain [PF17820.3, score=24.4]; Variant SH3 domain [PF07653.19, score=23.4]; SH3 domain [PF00018.30, score=21.9]} {Human: ENSG00000147044, CASK, calcium/calmodulin dependent serine protein kinase, [Score=1063, Expect=0.0]} {Mouse: ENSMUSG00000031012, Cask, calcium/calmodulin-dependent serine protein kinase (MAGUK family), [Score=1063, Expect=0.0]} {Dmel: FBgn0013759, CASK, [Score=890, Expect=0.0]} {Celegans: WBGene00002991, lin-2, [Score=738, Expect=0.0]} {Smed: dd_Smed_v6_7723_0_4, dd_Smed_v6_7723_0_4, [RH, Score=1149, Expect=0.0]} {RNA1509_13322} {RNA1310_1798.2} {RNA815_14711}
22. MligTC455_22419 37 0.78 Mlig455_009205

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_009205 {REF} {Length: 678} {RNA1310_72808} {RNA815_44140}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA