TomoSeq data search

Data search

Results for MligTC455_25375

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_25375

385

8.03

Mlig455_008124, Mlig455_015606

Neo: -

Age: Up-Down-Down

ADAR

Mlig455_008124 {REF} {Length: 4266} {TRANSSPLICED} {Pfam: Adenosine-deaminase (editase) domain [PF02137.20, score=269.5]; Double-stranded RNA binding motif [PF00035.28, score=70.4]; Adenosine deaminase z-alpha domain [PF02295.19, score=25.4]} {Human: ENSG00000160710, ADAR, adenosine deaminase, RNA specific, [RH, Score=324, Expect=9e-94]} {Mouse: ENSMUSG00000027951, Adar, adenosine deaminase, RNA-specific, [RH, Score=321, Expect=4e-93]} {Dmel: FBgn0026086, Adar, Adenosine deaminase acting on RNA, [Score=242, Expect=9e-69]} {Celegans: WBGene00000080, adr-2, Probable double-stranded RNA-specific adenosine deaminase, [Score=160, Expect=1e-41]} {Smed: dd_Smed_v6_8562_0_1, dd_Smed_v6_8562_0_1, [RH, Score=286, Expect=8e-84]} {RNA1509_10232} {RNA1310_1256} {RNA815_4377}

Mlig455_015606 {REF} {Length: 3976} {TRANSSPLICED} {Pfam: Adenosine-deaminase (editase) domain [PF02137.20, score=269.4]; Double-stranded RNA binding motif [PF00035.28, score=70.7]; Adenosine deaminase z-alpha domain [PF02295.19, score=26.9]} {Human: ENSG00000160710, ADAR, adenosine deaminase, RNA specific, [RH, Score=323, Expect=2e-93]} {Mouse: ENSMUSG00000027951, Adar, adenosine deaminase, RNA-specific, [RH, Score=321, Expect=6e-93]} {Dmel: FBgn0026086, Adar, Adenosine deaminase acting on RNA, [Score=242, Expect=1e-68]} {Celegans: WBGene00000080, adr-2, Probable double-stranded RNA-specific adenosine deaminase, [Score=160, Expect=1e-41]} {Smed: dd_Smed_v6_8562_0_1, dd_Smed_v6_8562_0_1, [RH, Score=286, Expect=9e-84]} {RNA1509_10232} {RNA1310_1256} {RNA815_4377}

Cumulative graph for MligTC455_25375

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.143	3.559	0.92464	1.00000
RegionR2	0.44	3.559	0.45185	0.83957
RegionR3	0.369	3.559	0.43009	0.95054
RegionR4	1.137	3.559	0.05287	0.20033
RegionR5	0.618	3.559	0.15555	0.41308
RegionR6	0.65	3.559	0.17086	0.72800
RegionR7	-3.24	3.559	0.00187	0.05418
RegionR8	-0.117	3.559	0.89636	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.013	3.559	0.24038	0.96582
RegenerationR2	0.581	3.559	0.14344	0.57456
RegenerationR3	-0.15	3.559	0.75358	0.96577
RegenerationR4	-0.465	3.559	0.37199	0.79525
RegenerationR5	0.292	3.559	0.50634	0.86188
RegenerationR6	-0.743	3.559	0.14296	0.46328
RegenerationBL	0.019	3.559	0.96726	1.00000
RegenerationTP	1.128	3.559	0.21308	0.65607

Genes with expression patterns similar to MligTC455_25375

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_25375	385	8.03	Mlig455_008124, Mlig455_015606	Neo: - Age: Up-Down-Down	ADAR	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_008124 {REF} {Length: 4266} {TRANSSPLICED} {Pfam: Adenosine-deaminase (editase) domain [PF02137.20, score=269.5]; Double-stranded RNA binding motif [PF00035.28, score=70.4]; Adenosine deaminase z-alpha domain [PF02295.19, score=25.4]} {Human: ENSG00000160710, ADAR, adenosine deaminase, RNA specific, [RH, Score=324, Expect=9e-94]} {Mouse: ENSMUSG00000027951, Adar, adenosine deaminase, RNA-specific, [RH, Score=321, Expect=4e-93]} {Dmel: FBgn0026086, Adar, Adenosine deaminase acting on RNA, [Score=242, Expect=9e-69]} {Celegans: WBGene00000080, adr-2, Probable double-stranded RNA-specific adenosine deaminase, [Score=160, Expect=1e-41]} {Smed: dd_Smed_v6_8562_0_1, dd_Smed_v6_8562_0_1, [RH, Score=286, Expect=8e-84]} {RNA1509_10232} {RNA1310_1256} {RNA815_4377} Mlig455_015606 {REF} {Length: 3976} {TRANSSPLICED} {Pfam: Adenosine-deaminase (editase) domain [PF02137.20, score=269.4]; Double-stranded RNA binding motif [PF00035.28, score=70.7]; Adenosine deaminase z-alpha domain [PF02295.19, score=26.9]} {Human: ENSG00000160710, ADAR, adenosine deaminase, RNA specific, [RH, Score=323, Expect=2e-93]} {Mouse: ENSMUSG00000027951, Adar, adenosine deaminase, RNA-specific, [RH, Score=321, Expect=6e-93]} {Dmel: FBgn0026086, Adar, Adenosine deaminase acting on RNA, [Score=242, Expect=1e-68]} {Celegans: WBGene00000080, adr-2, Probable double-stranded RNA-specific adenosine deaminase, [Score=160, Expect=1e-41]} {Smed: dd_Smed_v6_8562_0_1, dd_Smed_v6_8562_0_1, [RH, Score=286, Expect=9e-84]} {RNA1509_10232} {RNA1310_1256} {RNA815_4377}
2.	MligTC455_29299	507	10.56	Mlig455_044328, Mlig455_046103, Mlig455_056418	Neo: - Age: -	CTNNAL1	1.767	-	-	-	0.808	0.959	-	Mlig455_044328 {REF} {Length: 3956} {Pfam: Vinculin family [PF01044.21, score=82.2]} {Human: ENSG00000119326, CTNNAL1, catenin alpha like 1, [Score=147, Expect=1e-37]} {Mouse: ENSMUSG00000038816, Ctnnal1, catenin (cadherin associated protein), alpha-like 1, [Score=155, Expect=6e-41]} {Dmel: FBgn0010215, alpha-Cat, alpha Catenin, [Score=99.0, Expect=2e-22]} {Celegans: WBGene00000832, ctn-1, Alpha-CaTuliN (Catenin/vinculin related), [Score=149, Expect=3e-39]} {RNA1509_23121} {RNA1310_18374, RNA1509_23121} {RNA1509_23121, RNA815_7469} Mlig455_046103 {REF} {Length: 3062} {Pfam: Phage integrase family [PF00589.24, score=25.7]} {RNA1509_19505} {RNA1310_407.2} {RNA815_3378} Mlig455_056418 {REF} {Length: 121} {NoTransDecoderORF} {RNA1509_19505} {RNA1310_2574} {RNA815_18445}
3.	MligTC455_16881	239	4.98	Mlig455_043129	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.365	KIF27	1.753	-	-	-	0.800	-	0.953	Mlig455_043129 {REF} {Length: 6807} {TRANSSPLICED} {Pfam: Kinesin motor domain [PF00225.25, score=327.7]; Microtubule binding [PF16796.7, score=68.1]} {Human: ENSG00000165115, KIF27, kinesin family member 27, [RH, Score=551, Expect=3e-173]} {Mouse: ENSMUSG00000060176, Kif27, kinesin family member 27, [RH, Score=528, Expect=1e-164]} {Dmel: FBgn0032243, Klp31E, Kinesin-like protein at 31E, [Score=305, Expect=1e-86]} {Celegans: WBGene00002223, klp-12, Kinesin-Like Protein, [Score=303, Expect=1e-84]} {Smed: dd_Smed_v6_9952_0_1, dd_Smed_v6_9952_0_1, [RH, Score=754, Expect=0.0]} {RNA1509_16837} {RNA1310_2270.1} {RNA815_6161}
4.	MligTC455_19718	519	10.8	Mlig455_048439	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.528 Region-enriched R2: 2.401/0.00718	ANKUB1	1.663	-	-	-	0.962	-	0.701	Mlig455_048439 {REF} {Length: 3293} {Pfam: Ubiquitin family [PF00240.25, score=40.5]} {Human: ENSG00000206199, ANKUB1, ankyrin repeat and ubiquitin domain containing 1, [RH, Score=268, Expect=1e-81]} {Mouse: ENSMUSG00000074591, Ankub1, ankrin repeat and ubiquitin domain containing 1, [RH, Score=259, Expect=9e-79]} {Smed: dd_Smed_v6_9027_0_1, dd_Smed_v6_9027_0_1, [RH, Score=509, Expect=3e-174]} {RNA1509_10661, RNA1509_38601} {RNA1310_11316.2, RNA1509_10661, RNA1509_38601} {RNA1509_10661, RNA1509_38601, RNA815_657.1}
5.	MligTC455_26587	171	3.56	Mlig455_001844	Neo: - Age: Up-Down-Down, logFC(26M/2M)=0.297	MYH10	0.973	-	-	-	-	0.973	-	Mlig455_001844 {REF} {Length: 9171} {Pfam: Myosin head (motor domain) [PF00063.23, score=1069.2]; Myosin tail [PF01576.21, score=835.3]; Myosin N-terminal SH3-like domain [PF02736.21, score=50.1]; QLQ [PF08880.13, score=23.9]} {Human: ENSG00000133026, MYH10, myosin heavy chain 10, [Score=1512, Expect=0.0]; ENSG00000100345, MYH9, myosin heavy chain 9, [Score=1497, Expect=0.0]; ENSG00000133392, MYH11, myosin heavy chain 11, [Score=1484, Expect=0.0]; ENSG00000276480, MYH11, myosin heavy chain 11, [Score=1484, Expect=0.0]} {Mouse: ENSMUSG00000020900, Myh10, myosin, heavy polypeptide 10, non-muscle, [Score=1514, Expect=0.0]; ENSMUSG00000022443, Myh9, myosin, heavy polypeptide 9, non-muscle, [Score=1505, Expect=0.0]; ENSMUSG00000018830, Myh11, myosin, heavy polypeptide 11, smooth muscle, [Score=1469, Expect=0.0]} {Dmel: FBgn0265434, zip, zipper, [Score=1660, Expect=0.0]} {Celegans: WBGene00003776, nmy-1, Non-muscle MYosin, [Score=1402, Expect=0.0]} {Smed: dd_Smed_v6_2912_0_1, dd_Smed_v6_2912_0_1, [Score=1388, Expect=0.0]} {RNA1509_6218} {RNA1310_666} {RNA815_1591}
6.	MligTC455_43412	88	1.82	Mlig455_057184	Neo: - Age: -	ANKRD60	0.967	-	-	-	0.967	-	-	Mlig455_057184 {REF} {Length: 1347} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=42.6]; Ankyrin repeat [PF13606.8, score=33.4]; Ankyrin repeats (many copies) [PF13857.8, score=33.2]; Ankyrin repeat [PF00023.32, score=32.8]; Ankyrin repeats (many copies) [PF13637.8, score=23.4]} {Human: ENSG00000124227, ANKRD60, ankyrin repeat domain 60, [Score=79.3, Expect=5e-16]} {Mouse: ENSMUSG00000027517, Ankrd60, ankyrin repeat domain 60, [Score=70.1, Expect=4e-13]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=50.8, Expect=1e-06]} {Celegans: WBGene00003196, mel-11, MEL-11, [Score=51.6, Expect=6e-07]} {Smed: dd_Smed_v6_8330_0_1, dd_Smed_v6_8330_0_1, [Score=129, Expect=1e-33]} {RNA1310_18551} {RNA815_10264.1}
7.	MligTC455_22538	12	0.25	Mlig455_031920	Neo: - Age: logFC(26M/2M)=-0.408	PCDHA2	0.953	-	-	-	-	0.953	-	Mlig455_031920 {REF} {Length: 4404} {Pfam: Cadherin domain [PF00028.19, score=209.1]; Cadherin-like [PF16184.7, score=43.8]; Cadherin-like [PF08266.14, score=27.8]} {Human: ENSG00000204969, PCDHA2, protocadherin alpha 2, [Score=183, Expect=1e-46]; ENSG00000239389, PCDHA13, protocadherin alpha 13, [Score=180, Expect=9e-46]; ENSG00000204963, PCDHA7, protocadherin alpha 7, [Score=179, Expect=2e-45]; ENSG00000242419, PCDHGC4, protocadherin gamma subfamily C, 4, [Score=178, Expect=4e-45]} {Mouse: ENSMUSG00000104148, Pcdha2, protocadherin alpha 2, [Score=185, Expect=2e-47]; ENSMUSG00000007440, Pcdha11, protocadherin alpha 11, [Score=182, Expect=1e-46]; ENSMUSG00000103310, Pcdha12, protocadherin alpha 12, [Score=181, Expect=6e-46]; ENSMUSG00000102206, Pcdha11, protocadherin alpha 11, [Score=179, Expect=1e-45]; ENSMUSG00000103442, Pcdha1, protocadherin alpha 1, [Score=176, Expect=9e-45]} {Dmel: FBgn0001075, ft, fat, [Score=154, Expect=3e-37]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=122, Expect=1e-27]} {Smed: dd_Smed_v6_5930_0_1, dd_Smed_v6_5930_0_1, [RH, Score=259, Expect=3e-71]} {RNA1509_50526} {RNA1310_8485, RNA1509_50526} {RNA1509_50526, RNA815_17363}

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