M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_25562

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_25562 10 0.21 Mlig455_042405

Neo: -

Age: -

 KREMEN2 Mlig455_042405 {REF} {Length: 2000} {TRANSSPLICED} {Pfam: WSC domain [PF01822.21, score=47.2]} {Human: ENSG00000131650, KREMEN2, kringle containing transmembrane protein 2, [Score=48.1, Expect=5e-06]} {Mouse: ENSMUSG00000040680, Kremen2, kringle containing transmembrane protein 2, [Score=47.4, Expect=6e-06]} {RNA1509_39834} {RNA1310_29401} {RNA815_27180}

Cumulative graph for MligTC455_25562

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_25562

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_25562 10 0.21 Mlig455_042405

Neo: -

Age: -

 KREMEN2 1 - - - - 1.000 - Mlig455_042405 {REF} {Length: 2000} {TRANSSPLICED} {Pfam: WSC domain [PF01822.21, score=47.2]} {Human: ENSG00000131650, KREMEN2, kringle containing transmembrane protein 2, [Score=48.1, Expect=5e-06]} {Mouse: ENSMUSG00000040680, Kremen2, kringle containing transmembrane protein 2, [Score=47.4, Expect=6e-06]} {RNA1509_39834} {RNA1310_29401} {RNA815_27180}
2. MligTC455_25597 15 0.32 Mlig455_042454

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_042454 {REF} {Length: 1742} {NoTransDecoderORF} {RNA1310_68055}
3. MligTC455_36274 15 0.31 Mlig455_008085

Neo: -

Age: -

 0.991 - - - - 0.991 - Mlig455_008085 {REF} {Length: 2167} {NoTransDecoderORF} {RNA1509_32205} {RNA1310_64038} {RNA815_49379}
4. MligTC455_51603 39 0.81 Mlig455_016769

Neo: -

Age: -

 0.991 - - - - 0.991 - Mlig455_016769 {REF} {Length: 1577} {RNA1509_44500} {RNA1310_22352} {RNA815_21481}
5. MligTC455_27211 14 0.29 Mlig455_024750

Neo: -

Age: Down-Up-Down

 0.99 - - - - 0.990 - Mlig455_024750 {REF} {Length: 887} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_15620} {RNA815_11419.1}
6. MligTC455_01128 10 0.2 Mlig455_011548

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_011548 {REF} {Length: 414} {NoTransDecoderORF} {RNA1509_48793} {RNA1310_50509} {RNA815_52211}
7. MligTC455_17759 25 0.53 Mlig455_032815

Neo: -

Age: Up-Up-Down

 0.987 - - - - 0.987 - Mlig455_032815 {REF} {Length: 1891} {Pfam: Protein of unknown function (DUF2673) [PF10880.10, score=53.5]} {RNA1509_57582} {RNA1310_49538.1, RNA1509_57582}
8. MligTC455_38121 24 0.5 Mlig455_043084

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_043084 {REF} {Length: 3258} {NoTransDecoderORF} {RNA1509_41513} {RNA1310_17939.1, RNA1509_41513} {RNA1509_41513, RNA815_16258}
9. MligTC455_38165 21 0.43 Mlig455_027222, Mlig455_050651

Neo: -

Age: Up-Down-Down

 PKD2L1 0.985 - - - - 0.985 -

Mlig455_027222 {REF} {Length: 15740} {Pfam: REJ domain [PF02010.17, score=173.3]; Polycystin cation channel [PF08016.14, score=169.4]; F5/8 type C domain [PF00754.27, score=57.4]} {Human: ENSG00000107593, PKD2L1, polycystin 2 like 1, transient receptor potential cation channel, [Score=120, Expect=2e-26]} {Mouse: ENSMUSG00000034416, Pkd1l2, polycystic kidney disease 1 like 2, [Score=142, Expect=8e-33]} {Dmel: FBgn0040333, brv3, brivido-3, [Score=67.0, Expect=3e-10]} {Celegans: WBGene00003058, lov-1, Location of vulva defective 1, [Score=133, Expect=3e-30]} {Smed: dd_Smed_v6_13975_0_1, dd_Smed_v6_13975_0_1, [Score=173, Expect=1e-42]} {RNA1509_58823} {RNA1310_23140.1} {RNA815_23466}

Mlig455_050651 {REF} {Length: 4376} {Pfam: F5/8 type C domain [PF00754.27, score=55.0]; Lectin C-type domain [PF00059.23, score=21.4]} {RNA1509_58823} {RNA1310_38951} {RNA815_44024}
10. MligTC455_31793 17 0.36 Mlig455_026274

Neo: -

Age: Up-Down-Up

Region-enriched R4: 5.540/0.02199

 TRIM3 0.984 - - - - 0.984 - Mlig455_026274 {REF} {Length: 2070} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=28.5]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=62.0, Expect=2e-09]; ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=62.0, Expect=2e-09]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=62.0, Expect=1e-09]; ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=62.0, Expect=1e-09]} {Dmel: FBgn0265356, tn, thin, [Score=57.4, Expect=3e-08]} {RNA1509_23300} {RNA1310_14145.1} {RNA815_3900.5}
11. MligTC455_54845 7 0.16 Mlig455_011372

Neo: -

Age: -

 0.984 - - - - 0.984 - Mlig455_011372 {REF} {Length: 312} {NoTransDecoderORF}
12. MligTC455_36198 102 2.13 Mlig455_061010

Neo: -

Age: -

 TNS1 0.981 - - - - 0.981 - Mlig455_061010 {REF} {Length: 1601} {Pfam: Phosphotyrosine-binding domain [PF08416.15, score=49.9]; SH2 domain [PF00017.26, score=30.3]} {Human: ENSG00000079308, TNS1, tensin 1, [Score=155, Expect=5e-42]; ENSG00000136205, TNS3, tensin 3, [Score=151, Expect=2e-40]} {Mouse: ENSMUSG00000055322, Tns1, tensin 1, [Score=155, Expect=2e-42]; ENSMUSG00000020422, Tns3, tensin 3, [Score=154, Expect=1e-41]} {Dmel: FBgn0000244, by, blistery, [Score=150, Expect=8e-41]} {Celegans: WBGene00006508, tns-1, TeNSin homolog, [Score=164, Expect=2e-48]} {Smed: dd_Smed_v6_4454_0_5, dd_Smed_v6_4454_0_5, [Score=153, Expect=5e-45]} {RNA1509_28824} {RNA1310_20281} {RNA815_21042}
13. MligTC455_50866 73 1.53 Mlig455_052918

Neo: Int S/G2/M

Age: -

 0.98 - - - - 0.980 - Mlig455_052918 {REF} {Length: 3299} {RNA1509_20768} {RNA1310_18267} {RNA815_37080}
14. MligTC455_51935 200 4.16 Mlig455_036791

Neo: -

Age: -

 CMPK1 0.98 - - - - 0.980 - Mlig455_036791 {REF} {Length: 1554} {Pfam: Adenylate kinase [PF00406.24, score=105.0]; AAA domain [PF13207.8, score=67.2]; AAA domain [PF13238.8, score=20.3]} {Human: ENSG00000162368, CMPK1, cytidine/uridine monophosphate kinase 1, [Score=149, Expect=8e-44]} {Mouse: ENSMUSG00000028719, Cmpk1, cytidine monophosphate (UMP-CMP) kinase 1, [Score=150, Expect=3e-44]} {Dmel: FBgn0028833, Dak1, [Score=143, Expect=3e-41]} {Celegans: WBGene00007812, C29F7.3, UMP-CMP kinase 1, [Score=137, Expect=4e-40]} {Smed: dd_Smed_v6_3353_0_1, dd_Smed_v6_3353_0_1, [Score=132, Expect=9e-38]} {RNA1509_39811} {RNA1310_32882, RNA1509_39811} {RNA1509_39811, RNA815_17820.1}
15. MligTC455_27751 8 0.16 Mlig455_006257

Neo: -

Age: Up-Down-Up

 ALKBH3 0.979 - - - - 0.979 - Mlig455_006257 {REF} {Length: 2864} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=76.9]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=108, Expect=3e-25]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=101, Expect=5e-23]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [Score=81.6, Expect=1e-16]} {RNA1509_23004} {RNA1310_19653} {RNA815_20132}
16. MligTC455_14909 13 0.27 Mlig455_002498

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_002498 {REF} {Length: 2555} {NoTransDecoderORF} {RNA1509_58323} {RNA1310_36708} {RNA815_57793}
17. MligTC455_00744 5 0.11 Mlig455_027706

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_027706 {REF} {Length: 520} {NoTransDecoderORF} {RNA1310_47876.2} {RNA815_62057}
18. MligTC455_39901 17 0.35 Mlig455_038142

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.108

 0.97 - - - - 0.970 - Mlig455_038142 {REF} {Length: 2322} {RNA1509_56818} {RNA1310_64021.2} {RNA815_5110.1}
19. MligTC455_29853 45 0.94 Mlig455_026579, Mlig455_044780, Mlig455_054135

Neo: -

Age: -

 0.966 - - - - 0.966 -

Mlig455_026579 {REF} {Length: 430} {RNA1310_43414}

Mlig455_044780 {REF} {Length: 430} {RNA1310_43414}

Mlig455_054135 {REF} {Length: 4050} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=27.4]} {RNA1509_13774} {RNA1310_6053.2} {RNA815_16908}
20. MligTC455_55389 7 0.14 Mlig455_051098

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_051098 {REF} {Length: 79} {NoTransDecoderORF} {RNA1310_22135}
21. MligTC455_36197 92 1.91 Mlig455_053513

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.446

 TNS1 0.964 - - - - 0.964 - Mlig455_053513 {REF} {Length: 3575} {Pfam: Phosphotyrosine-binding domain [PF08416.15, score=47.7]; SH2 domain [PF00017.26, score=40.2]} {Human: ENSG00000079308, TNS1, tensin 1, [Score=177, Expect=7e-45]} {Mouse: ENSMUSG00000055322, Tns1, tensin 1, [Score=176, Expect=8e-45]; ENSMUSG00000020422, Tns3, tensin 3, [Score=169, Expect=9e-43]} {Dmel: FBgn0000244, by, blistery, [Score=166, Expect=2e-42]} {Celegans: WBGene00006508, tns-1, TeNSin homolog, [Score=181, Expect=5e-51]} {Smed: dd_Smed_v6_4494_0_2, dd_Smed_v6_4494_0_2, [Score=181, Expect=5e-48]} {RNA1509_28824, RNA1509_50496} {RNA1310_7318, RNA1509_28824, RNA1509_50496} {RNA1509_28824, RNA1509_50496, RNA815_6926}
22. MligTC455_11983 31 0.65 Mlig455_018799, Mlig455_018971

Neo: -

Age: -

 0.963 - - - - 0.963 -

Mlig455_018799 {REF} {Length: 1330} {TRANSSPLICED} {Smed: dd_Smed_v6_1404_0_1, dd_Smed_v6_1404_0_1, [Score=79.7, Expect=4e-16]}

Mlig455_018971 {REF} {Length: 1242} {Smed: dd_Smed_v6_1404_0_1, dd_Smed_v6_1404_0_1, [Score=77.4, Expect=2e-15]}
23. MligTC455_32361 166 3.47 Mlig455_009263

Neo: -

Age: Down-Down-Up

 0.963 - - - - 0.963 - Mlig455_009263 {REF} {Length: 2676} {RNA1509_34999, RNA1509_58423} {RNA1310_38117, RNA1509_58423} {RNA1509_58423, RNA815_6529.1}
24. MligTC455_28686 23 0.47 Mlig455_011407

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_011407 {REF} {Length: 383} {TRANSSPLICED} {RNA1509_35740} {RNA1310_43519} {RNA815_21134}
25. MligTC455_34656 48 1 Mlig455_058210

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.537

Region-enriched R2: 5.874/0.03747

 PPEF1 0.961 - - - - 0.961 - Mlig455_058210 {REF} {Length: 2937} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=90.9]; EF-hand domain pair [PF13499.8, score=63.3]; EF hand [PF00036.34, score=53.9]; PPP5 TPR repeat region [PF08321.14, score=45.9]; EF-hand domain pair [PF13833.8, score=45.7]; EF-hand domain [PF13405.8, score=43.1]; EF hand [PF13202.8, score=41.7]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=20.2]} {Human: ENSG00000086717, PPEF1, protein phosphatase with EF-hand domain 1, [Score=533, Expect=0.0]} {Mouse: ENSMUSG00000062168, Ppef1, protein phosphatase with EF hand calcium-binding domain 1, [Score=512, Expect=1e-174]} {Dmel: FBgn0265959, rdgC, retinal degeneration C, [Score=489, Expect=6e-166]} {Celegans: WBGene00003969, pef-1, Serine/threonine-protein phosphatase with EF-hands pef-1, [Score=563, Expect=0.0]} {Smed: dd_Smed_v6_11874_0_1, dd_Smed_v6_11874_0_1, [Score=642, Expect=0.0]} {RNA1509_3508} {RNA1310_11714.1} {RNA815_4130}
26. MligTC455_39586 18 0.38 Mlig455_048851

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_048851 {REF} {Length: 1847} {NoTransDecoderORF} {RNA1509_25886} {RNA1310_11504.1} {RNA815_17069.1}
27. MligTC455_56167 8 0.17 Mlig455_058714

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_058714 {REF} {Length: 252} {NoTransDecoderORF}
28. MligTC455_12092 26 0.53 Mlig455_037145, Mlig455_038506

Neo: -

Age: -

Region-enriched R2: 8.236/0.00174

 0.96 - - - - 0.960 -

Mlig455_037145 {REF} {Length: 1565} {RNA1310_83153} {RNA815_43915}

Mlig455_038506 {REF} {Length: 1558} {RNA1310_83153} {RNA815_43915}
29. MligTC455_39985 28 0.58 Mlig455_022339, Mlig455_022351

Neo: -

Age: -

 0.96 - - - - 0.960 -

Mlig455_022339 {REF} {Length: 783} {RNA1509_47318} {RNA1310_125793} {RNA815_2914.1}

Mlig455_022351 {REF} {Length: 1105} {Pfam: WSC domain [PF01822.21, score=64.2]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=64.7, Expect=8e-12]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=51.6, Expect=2e-07]} {RNA1310_59980.1} {RNA815_55549}
30. MligTC455_11966 21 0.44 Mlig455_048087

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_048087 {REF} {Length: 791} {RNA1509_15570} {RNA1310_9037} {RNA815_62132}
31. MligTC455_52483 36 0.76 Mlig455_042704

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_042704 {REF} {Length: 2647} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=149.0]} {Smed: dd_Smed_v6_31771_0_1, dd_Smed_v6_31771_0_1, [Score=71.2, Expect=7e-13]} {RNA1310_47540} {RNA815_16144}
32. MligTC455_30643 29 0.6 Mlig455_011351

Neo: -

Age: Up-Down-Down

 SACS 0.958 - - - - 0.958 - Mlig455_011351 {REF} {Length: 19090} {Pfam: HEPN domain [PF05168.16, score=58.1]; Protein of unknown function (DUF3684) [PF12449.10, score=23.3]; Bacterial protein of unknown function (DUF896) [PF05979.14, score=18.6]} {Human: ENSG00000151835, SACS, sacsin molecular chaperone, [Score=617, Expect=2e-176]} {Mouse: ENSMUSG00000048279, Sacs, sacsin, [RH, Score=608, Expect=8e-174]} {RNA1509_56235} {RNA1310_2346.1} {RNA815_63.1}
33. MligTC455_02837 29 0.61 Mlig455_004700

Neo: -

Age: -

Region-enriched R6: 6.687/0.01418

 0.956 - - - - 0.956 - Mlig455_004700 {REF} {Length: 1630} {RNA1509_44223} {RNA1310_194.1} {RNA815_27158}
34. MligTC455_11716 16 0.32 Mlig455_060156

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_060156 {REF} {Length: 2150} {RNA1509_40399} {RNA1310_86013} {RNA815_53527}
35. MligTC455_27519 136 2.83 Mlig455_006410

Neo: -

Age: Down-Down-Up

 CRB2 0.956 - - - - 0.956 - Mlig455_006410 {REF} {Length: 4122} {Pfam: EGF-like domain [PF00008.29, score=130.3]; Human growth factor-like EGF [PF12661.9, score=68.3]; Laminin G domain [PF02210.26, score=25.2]} {Human: ENSG00000148204, CRB2, crumbs 2, cell polarity complex component, [Score=326, Expect=6e-93]} {Mouse: ENSMUSG00000035403, Crb2, crumbs family member 2, [Score=323, Expect=4e-92]} {Dmel: FBgn0259685, crb, crumbs, [Score=377, Expect=7e-109]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=212, Expect=2e-55]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=186, Expect=1e-47]} {RNA1509_50019} {RNA1310_5116.1} {RNA815_693.1}
36. MligTC455_13116 127 2.64 Mlig455_040518

Neo: -

Age: Up-Down-Down

 0.955 - - - - 0.955 - Mlig455_040518 {REF} {Length: 2655} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF3472) [PF11958.10, score=68.3]; Ricin-type beta-trefoil lectin domain-like [PF14200.8, score=27.6]; Ricin-type beta-trefoil lectin domain [PF00652.24, score=23.9]} {RNA1509_20982, RNA1509_58263} {RNA1310_18012.1, RNA1509_20982} {RNA1509_20982, RNA815_10798}
37. MligTC455_18373 45 0.93 Mlig455_046441

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_046441 {REF} {Length: 3745} {Pfam: C2H2-type zinc finger [PF13894.8, score=47.0]; Zinc finger, C2H2 type [PF00096.28, score=32.6]; C2H2 type zinc-finger (1 copy) [PF16293.7, score=22.6]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=21.7]} {RNA1509_21763} {RNA1310_9886.1} {RNA815_7892}
38. MligTC455_23553 165 3.44 Mlig455_020966

Neo: -

Age: -

 CSNK1G1 0.955 - - - - 0.955 - Mlig455_020966 {REF} {Length: 3985} {Pfam: Protein kinase domain [PF00069.27, score=100.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=54.6]; Fungal protein kinase [PF17667.3, score=29.0]} {Human: ENSG00000169118, CSNK1G1, casein kinase 1 gamma 1, [RH, Score=529, Expect=0.0]; ENSG00000151292, CSNK1G3, casein kinase 1 gamma 3, [RH, Score=521, Expect=0.0]; ENSG00000133275, CSNK1G2, casein kinase 1 gamma 2, [RH, Score=514, Expect=5e-180]} {Mouse: ENSMUSG00000032384, Csnk1g1, casein kinase 1, gamma 1, [RH, Score=538, Expect=0.0]; ENSMUSG00000073563, Csnk1g3, casein kinase 1, gamma 3, [RH, Score=513, Expect=1e-179]} {Dmel: FBgn0250823, gish, gilgamesh, [RH, Score=514, Expect=9e-180]} {Celegans: WBGene00013709, csnk-1, Casein kinase I gamma, [RH, Score=513, Expect=2e-180]} {Smed: dd_Smed_v6_8508_0_2, dd_Smed_v6_8508_0_2, [RH, Score=464, Expect=3e-161]} {RNA1509_20026} {RNA1310_20582.1} {RNA815_13120.1}
39. MligTC455_36784 15 0.3 Mlig455_046783, Mlig455_069957

Neo: -

Age: logFC(26M/2M)=-0.515

 0.954 - - - - 0.954 -

Mlig455_046783 {REF} {Length: 1605} {RNA1509_14365} {RNA1310_13117.2} {RNA815_6458.1}

Mlig455_069957 {REF} {Length: 1377} {RNA1509_14365} {RNA1310_13117.4} {RNA815_6458.1}
40. MligTC455_41813 10 0.22 Mlig455_056441

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_056441 {REF} {Length: 518} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=35.0]} {Smed: dd_Smed_v6_24304_0_1, dd_Smed_v6_24304_0_1, [Score=105, Expect=1e-30]}
41. MligTC455_17323 15 0.32 Mlig455_012298

Neo: Int S/G2/M

Age: -

 0.951 - - - - 0.951 - Mlig455_012298 {REF} {Length: 2351} {RNA1310_93397} {RNA815_47617}
42. MligTC455_32152 27 0.56 Mlig455_049207

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_049207 {REF} {Length: 2298} {Pfam: F5/8 type C domain [PF00754.27, score=22.6]} {RNA1509_50442} {RNA1310_39050} {RNA815_54346}
43. MligTC455_32263 39 0.82 Mlig455_063832

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_063832 {REF} {Length: 3384} {RNA1310_57875} {RNA815_33358}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA