M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_36274

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_36274 15 0.31 Mlig455_008085

Neo: -

Age: -

 Mlig455_008085 {REF} {Length: 2167} {NoTransDecoderORF} {RNA1509_32205} {RNA1310_64038} {RNA815_49379}

Cumulative graph for MligTC455_36274

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_36274

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_36274 15 0.31 Mlig455_008085

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_008085 {REF} {Length: 2167} {NoTransDecoderORF} {RNA1509_32205} {RNA1310_64038} {RNA815_49379}
2. MligTC455_17759 25 0.53 Mlig455_032815

Neo: -

Age: Up-Up-Down

 0.996 - - - - 0.996 - Mlig455_032815 {REF} {Length: 1891} {Pfam: Protein of unknown function (DUF2673) [PF10880.10, score=53.5]} {RNA1509_57582} {RNA1310_49538.1, RNA1509_57582}
3. MligTC455_25597 15 0.32 Mlig455_042454

Neo: -

Age: -

 0.994 - - - - 0.994 - Mlig455_042454 {REF} {Length: 1742} {NoTransDecoderORF} {RNA1310_68055}
4. MligTC455_36198 102 2.13 Mlig455_061010

Neo: -

Age: -

 TNS1 0.992 - - - - 0.992 - Mlig455_061010 {REF} {Length: 1601} {Pfam: Phosphotyrosine-binding domain [PF08416.15, score=49.9]; SH2 domain [PF00017.26, score=30.3]} {Human: ENSG00000079308, TNS1, tensin 1, [Score=155, Expect=5e-42]; ENSG00000136205, TNS3, tensin 3, [Score=151, Expect=2e-40]} {Mouse: ENSMUSG00000055322, Tns1, tensin 1, [Score=155, Expect=2e-42]; ENSMUSG00000020422, Tns3, tensin 3, [Score=154, Expect=1e-41]} {Dmel: FBgn0000244, by, blistery, [Score=150, Expect=8e-41]} {Celegans: WBGene00006508, tns-1, TeNSin homolog, [Score=164, Expect=2e-48]} {Smed: dd_Smed_v6_4454_0_5, dd_Smed_v6_4454_0_5, [Score=153, Expect=5e-45]} {RNA1509_28824} {RNA1310_20281} {RNA815_21042}
5. MligTC455_25562 10 0.21 Mlig455_042405

Neo: -

Age: -

 KREMEN2 0.991 - - - - 0.991 - Mlig455_042405 {REF} {Length: 2000} {TRANSSPLICED} {Pfam: WSC domain [PF01822.21, score=47.2]} {Human: ENSG00000131650, KREMEN2, kringle containing transmembrane protein 2, [Score=48.1, Expect=5e-06]} {Mouse: ENSMUSG00000040680, Kremen2, kringle containing transmembrane protein 2, [Score=47.4, Expect=6e-06]} {RNA1509_39834} {RNA1310_29401} {RNA815_27180}
6. MligTC455_00744 5 0.11 Mlig455_027706

Neo: -

Age: -

 0.987 - - - - 0.987 - Mlig455_027706 {REF} {Length: 520} {NoTransDecoderORF} {RNA1310_47876.2} {RNA815_62057}
7. MligTC455_38165 21 0.43 Mlig455_027222, Mlig455_050651

Neo: -

Age: Up-Down-Down

 PKD2L1 0.987 - - - - 0.987 -

Mlig455_027222 {REF} {Length: 15740} {Pfam: REJ domain [PF02010.17, score=173.3]; Polycystin cation channel [PF08016.14, score=169.4]; F5/8 type C domain [PF00754.27, score=57.4]} {Human: ENSG00000107593, PKD2L1, polycystin 2 like 1, transient receptor potential cation channel, [Score=120, Expect=2e-26]} {Mouse: ENSMUSG00000034416, Pkd1l2, polycystic kidney disease 1 like 2, [Score=142, Expect=8e-33]} {Dmel: FBgn0040333, brv3, brivido-3, [Score=67.0, Expect=3e-10]} {Celegans: WBGene00003058, lov-1, Location of vulva defective 1, [Score=133, Expect=3e-30]} {Smed: dd_Smed_v6_13975_0_1, dd_Smed_v6_13975_0_1, [Score=173, Expect=1e-42]} {RNA1509_58823} {RNA1310_23140.1} {RNA815_23466}

Mlig455_050651 {REF} {Length: 4376} {Pfam: F5/8 type C domain [PF00754.27, score=55.0]; Lectin C-type domain [PF00059.23, score=21.4]} {RNA1509_58823} {RNA1310_38951} {RNA815_44024}
8. MligTC455_31793 17 0.36 Mlig455_026274

Neo: -

Age: Up-Down-Up

Region-enriched R4: 5.540/0.02199

 TRIM3 0.982 - - - - 0.982 - Mlig455_026274 {REF} {Length: 2070} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=28.5]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=62.0, Expect=2e-09]; ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=62.0, Expect=2e-09]} {Mouse: ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=62.0, Expect=1e-09]; ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=62.0, Expect=1e-09]} {Dmel: FBgn0265356, tn, thin, [Score=57.4, Expect=3e-08]} {RNA1509_23300} {RNA1310_14145.1} {RNA815_3900.5}
9. MligTC455_36197 92 1.91 Mlig455_053513

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.446

 TNS1 0.981 - - - - 0.981 - Mlig455_053513 {REF} {Length: 3575} {Pfam: Phosphotyrosine-binding domain [PF08416.15, score=47.7]; SH2 domain [PF00017.26, score=40.2]} {Human: ENSG00000079308, TNS1, tensin 1, [Score=177, Expect=7e-45]} {Mouse: ENSMUSG00000055322, Tns1, tensin 1, [Score=176, Expect=8e-45]; ENSMUSG00000020422, Tns3, tensin 3, [Score=169, Expect=9e-43]} {Dmel: FBgn0000244, by, blistery, [Score=166, Expect=2e-42]} {Celegans: WBGene00006508, tns-1, TeNSin homolog, [Score=181, Expect=5e-51]} {Smed: dd_Smed_v6_4494_0_2, dd_Smed_v6_4494_0_2, [Score=181, Expect=5e-48]} {RNA1509_28824, RNA1509_50496} {RNA1310_7318, RNA1509_28824, RNA1509_50496} {RNA1509_28824, RNA1509_50496, RNA815_6926}
10. MligTC455_29853 45 0.94 Mlig455_026579, Mlig455_044780, Mlig455_054135

Neo: -

Age: -

 0.979 - - - - 0.979 -

Mlig455_026579 {REF} {Length: 430} {RNA1310_43414}

Mlig455_044780 {REF} {Length: 430} {RNA1310_43414}

Mlig455_054135 {REF} {Length: 4050} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=27.4]} {RNA1509_13774} {RNA1310_6053.2} {RNA815_16908}
11. MligTC455_39586 18 0.38 Mlig455_048851

Neo: -

Age: -

 0.978 - - - - 0.978 - Mlig455_048851 {REF} {Length: 1847} {NoTransDecoderORF} {RNA1509_25886} {RNA1310_11504.1} {RNA815_17069.1}
12. MligTC455_50866 73 1.53 Mlig455_052918

Neo: Int S/G2/M

Age: -

 0.978 - - - - 0.978 - Mlig455_052918 {REF} {Length: 3299} {RNA1509_20768} {RNA1310_18267} {RNA815_37080}
13. MligTC455_51935 200 4.16 Mlig455_036791

Neo: -

Age: -

 CMPK1 0.977 - - - - 0.977 - Mlig455_036791 {REF} {Length: 1554} {Pfam: Adenylate kinase [PF00406.24, score=105.0]; AAA domain [PF13207.8, score=67.2]; AAA domain [PF13238.8, score=20.3]} {Human: ENSG00000162368, CMPK1, cytidine/uridine monophosphate kinase 1, [Score=149, Expect=8e-44]} {Mouse: ENSMUSG00000028719, Cmpk1, cytidine monophosphate (UMP-CMP) kinase 1, [Score=150, Expect=3e-44]} {Dmel: FBgn0028833, Dak1, [Score=143, Expect=3e-41]} {Celegans: WBGene00007812, C29F7.3, UMP-CMP kinase 1, [Score=137, Expect=4e-40]} {Smed: dd_Smed_v6_3353_0_1, dd_Smed_v6_3353_0_1, [Score=132, Expect=9e-38]} {RNA1509_39811} {RNA1310_32882, RNA1509_39811} {RNA1509_39811, RNA815_17820.1}
14. MligTC455_11966 21 0.44 Mlig455_048087

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_048087 {REF} {Length: 791} {RNA1509_15570} {RNA1310_9037} {RNA815_62132}
15. MligTC455_32361 166 3.47 Mlig455_009263

Neo: -

Age: Down-Down-Up

 0.976 - - - - 0.976 - Mlig455_009263 {REF} {Length: 2676} {RNA1509_34999, RNA1509_58423} {RNA1310_38117, RNA1509_58423} {RNA1509_58423, RNA815_6529.1}
16. MligTC455_38121 24 0.5 Mlig455_043084

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_043084 {REF} {Length: 3258} {NoTransDecoderORF} {RNA1509_41513} {RNA1310_17939.1, RNA1509_41513} {RNA1509_41513, RNA815_16258}
17. MligTC455_01226 14 0.3 Mlig455_018203

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_018203 {REF} {Length: 673} {NoTransDecoderORF} {RNA1509_35533} {RNA1310_93416} {RNA815_17588}
18. MligTC455_27211 14 0.29 Mlig455_024750

Neo: -

Age: Down-Up-Down

 0.973 - - - - 0.973 - Mlig455_024750 {REF} {Length: 887} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_15620} {RNA815_11419.1}
19. MligTC455_13116 127 2.64 Mlig455_040518

Neo: -

Age: Up-Down-Down

 0.971 - - - - 0.971 - Mlig455_040518 {REF} {Length: 2655} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF3472) [PF11958.10, score=68.3]; Ricin-type beta-trefoil lectin domain-like [PF14200.8, score=27.6]; Ricin-type beta-trefoil lectin domain [PF00652.24, score=23.9]} {RNA1509_20982, RNA1509_58263} {RNA1310_18012.1, RNA1509_20982} {RNA1509_20982, RNA815_10798}
20. MligTC455_23553 165 3.44 Mlig455_020966

Neo: -

Age: -

 CSNK1G1 0.971 - - - - 0.971 - Mlig455_020966 {REF} {Length: 3985} {Pfam: Protein kinase domain [PF00069.27, score=100.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=54.6]; Fungal protein kinase [PF17667.3, score=29.0]} {Human: ENSG00000169118, CSNK1G1, casein kinase 1 gamma 1, [RH, Score=529, Expect=0.0]; ENSG00000151292, CSNK1G3, casein kinase 1 gamma 3, [RH, Score=521, Expect=0.0]; ENSG00000133275, CSNK1G2, casein kinase 1 gamma 2, [RH, Score=514, Expect=5e-180]} {Mouse: ENSMUSG00000032384, Csnk1g1, casein kinase 1, gamma 1, [RH, Score=538, Expect=0.0]; ENSMUSG00000073563, Csnk1g3, casein kinase 1, gamma 3, [RH, Score=513, Expect=1e-179]} {Dmel: FBgn0250823, gish, gilgamesh, [RH, Score=514, Expect=9e-180]} {Celegans: WBGene00013709, csnk-1, Casein kinase I gamma, [RH, Score=513, Expect=2e-180]} {Smed: dd_Smed_v6_8508_0_2, dd_Smed_v6_8508_0_2, [RH, Score=464, Expect=3e-161]} {RNA1509_20026} {RNA1310_20582.1} {RNA815_13120.1}
21. MligTC455_36784 15 0.3 Mlig455_046783, Mlig455_069957

Neo: -

Age: logFC(26M/2M)=-0.515

 0.971 - - - - 0.971 -

Mlig455_046783 {REF} {Length: 1605} {RNA1509_14365} {RNA1310_13117.2} {RNA815_6458.1}

Mlig455_069957 {REF} {Length: 1377} {RNA1509_14365} {RNA1310_13117.4} {RNA815_6458.1}
22. MligTC455_04122 9 0.18 Mlig455_054157

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_054157 {REF} {Length: 1730} {RNA1509_10814} {RNA1310_8377} {RNA815_22202}
23. MligTC455_13417 13 0.26 Mlig455_009840, Mlig455_010346

Neo: -

Age: -

 0.969 - - - - 0.969 -

Mlig455_009840 {REF} {Length: 1027} {NoTransDecoderORF} {RNA1310_124106} {RNA815_30229.1}

Mlig455_010346 {REF} {Length: 658} {NoTransDecoderORF} {RNA1310_124106} {RNA815_30229.1}
24. MligTC455_14603 15 0.31 Mlig455_012376

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_012376 {REF} {Length: 271} {NoTransDecoderORF}
25. MligTC455_51603 39 0.81 Mlig455_016769

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_016769 {REF} {Length: 1577} {RNA1509_44500} {RNA1310_22352} {RNA815_21481}
26. MligTC455_03581 18 0.38 Mlig455_059916

Neo: -

Age: logFC(26M/2M)=0.621

 CUBN 0.967 - - - - 0.967 - Mlig455_059916 {REF} {Length: 4313} {Pfam: CUB domain [PF00431.22, score=244.9]; CUB-like domain [PF02408.22, score=39.5]} {Human: ENSG00000107611, CUBN, cubilin, [Score=108, Expect=8e-23]} {Mouse: ENSMUSG00000026726, Cubn, cubilin (intrinsic factor-cobalamin receptor), [Score=110, Expect=1e-23]} {Dmel: FBgn0259140, CG42255, [Score=58.9, Expect=4e-08]} {Celegans: WBGene00003555, nas-39, Zinc metalloproteinase nas-39, [Score=56.6, Expect=1e-07]} {RNA1509_23989} {RNA1310_1198.1} {RNA815_345.1}
27. MligTC455_39901 17 0.35 Mlig455_038142

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.108

 0.965 - - - - 0.965 - Mlig455_038142 {REF} {Length: 2322} {RNA1509_56818} {RNA1310_64021.2} {RNA815_5110.1}
28. MligTC455_01128 10 0.2 Mlig455_011548

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_011548 {REF} {Length: 414} {NoTransDecoderORF} {RNA1509_48793} {RNA1310_50509} {RNA815_52211}
29. MligTC455_28337 18 0.38 Mlig455_044788

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=3.556

 WWP1 0.962 - - - - 0.962 - Mlig455_044788 {REF} {Length: 3619} {TRANSSPLICED} {Pfam: HECT-domain (ubiquitin-transferase) [PF00632.27, score=298.5]; WW domain [PF00397.28, score=47.3]; C2 domain [PF00168.32, score=40.3]} {Human: ENSG00000123124, WWP1, WW domain containing E3 ubiquitin protein ligase 1, [Score=542, Expect=0.0]; ENSG00000078747, ITCH, itchy E3 ubiquitin protein ligase, [Score=540, Expect=0.0]; ENSG00000198373, WWP2, WW domain containing E3 ubiquitin protein ligase 2, [Score=535, Expect=0.0]} {Mouse: ENSMUSG00000041058, Wwp1, WW domain containing E3 ubiquitin protein ligase 1, [Score=541, Expect=0.0]; ENSMUSG00000027598, Itch, itchy, E3 ubiquitin protein ligase, [Score=539, Expect=0.0]; ENSMUSG00000031930, Wwp2, WW domain containing E3 ubiquitin protein ligase 2, [Score=537, Expect=0.0]} {Dmel: FBgn0003557, Su(dx), Suppressor of deltex, [Score=515, Expect=2e-172]} {Celegans: WBGene00007009, wwp-1, E3 ubiquitin-protein ligase, [Score=515, Expect=8e-179]} {Smed: dd_Smed_v6_7779_0_1, dd_Smed_v6_7779_0_1, [Score=516, Expect=8e-175]} {RNA1509_12682} {RNA1310_9181} {RNA815_13641}
30. MligTC455_06719 14 0.29 Mlig455_068812

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_068812 {REF} {Length: 1840} {RNA1310_56477.2}
31. MligTC455_15596 85 1.76 Mlig455_036998

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_036998 {REF} {Length: 1482} {RNA1310_45006} {RNA815_27810}
32. MligTC455_17564 59 1.23 Mlig455_016424

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_016424 {REF} {Length: 6368} {RNA1509_56228} {RNA1310_86983} {RNA815_46718}
33. MligTC455_28686 23 0.47 Mlig455_011407

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_011407 {REF} {Length: 383} {TRANSSPLICED} {RNA1509_35740} {RNA1310_43519} {RNA815_21134}
34. MligTC455_47805 309 6.43 Mlig455_002866, Mlig455_033201

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.570

 NR2C2 0.96 - - - - 0.960 -

Mlig455_002866 {REF} {Length: 2397} {RNA1509_25172} {RNA1310_17963.1} {RNA815_11681}

Mlig455_033201 {REF} {Length: 2405} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=86.4]} {Human: ENSG00000177463, NR2C2, nuclear receptor subfamily 2 group C member 2, [Score=90.5, Expect=1e-18]; ENSG00000120798, NR2C1, nuclear receptor subfamily 2 group C member 1, [Score=87.8, Expect=4e-18]; ENSG00000101076, HNF4A, hepatocyte nuclear factor 4 alpha, [Score=87.4, Expect=7e-18]; ENSG00000113580, NR3C1, nuclear receptor subfamily 3 group C member 1, [Score=87.4, Expect=2e-17]; ENSG00000175745, NR2F1, nuclear receptor subfamily 2 group F member 1, [Score=87.0, Expect=6e-18]; ENSG00000160113, NR2F6, nuclear receptor subfamily 2 group F member 6, [Score=86.7, Expect=9e-18]; ENSG00000151623, NR3C2, nuclear receptor subfamily 3 group C member 2, [Score=86.7, Expect=3e-17]} {Mouse: ENSMUSG00000005893, Nr2c2, nuclear receptor subfamily 2, group C, member 2, [Score=88.2, Expect=5e-18]; ENSMUSG00000017950, Hnf4a, hepatic nuclear factor 4, alpha, [Score=88.2, Expect=3e-18]; ENSMUSG00000069171, Nr2f1, nuclear receptor subfamily 2, group F, member 1, [Score=87.0, Expect=5e-18]; ENSMUSG00000031618, Nr3c2, nuclear receptor subfamily 3, group C, member 2, [Score=87.0, Expect=1e-17]; ENSMUSG00000005897, Nr2c1, nuclear receptor subfamily 2, group C, member 1, [Score=86.7, Expect=1e-17]; ENSMUSG00000002393, Nr2f6, nuclear receptor subfamily 2, group F, member 6, [Score=85.9, Expect=9e-18]; ENSMUSG00000030551, Nr2f2, nuclear receptor subfamily 2, group F, member 2, [Score=85.1, Expect=2e-17]; ENSMUSG00000023034, Nr4a1, nuclear receptor subfamily 4, group A, member 1, [Score=85.1, Expect=4e-17]; ENSMUSG00000024431, Nr3c1, nuclear receptor subfamily 3, group C, member 1, [Score=85.1, Expect=5e-17]; ENSMUSG00000026398, Nr5a2, nuclear receptor subfamily 5, group A, member 2, [Score=84.3, Expect=7e-17]} {Dmel: FBgn0264562, Hr4, Hormone receptor 4, [Score=96.3, Expect=1e-20]} {Celegans: WBGene00003681, nhr-91, Nuclear hormone receptor family member nhr-91, [Score=89.7, Expect=5e-19]} {Smed: dd_Smed_v6_33286_0_2, dd_Smed_v6_33286_0_2, [Score=86.7, Expect=6e-19]} {RNA1509_25172} {RNA1310_17963.1, RNA1509_25172} {RNA1509_25172, RNA815_11681}
35. MligTC455_52483 36 0.76 Mlig455_042704

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_042704 {REF} {Length: 2647} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=149.0]} {Smed: dd_Smed_v6_31771_0_1, dd_Smed_v6_31771_0_1, [Score=71.2, Expect=7e-13]} {RNA1310_47540} {RNA815_16144}
36. MligTC455_01448 15 0.31 Mlig455_063614

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_063614 {REF} {Length: 27} {TRANSSPLICED} {NoTransDecoderORF}
37. MligTC455_35444 12 0.25 Mlig455_052986

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_052986 {REF} {Length: 637} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=79.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=45.4]} {Smed: dd_Smed_v6_18197_0_1, dd_Smed_v6_18197_0_1, [Score=75.9, Expect=9e-20]} {RNA1310_832} {RNA815_5321.2}
38. MligTC455_06025 14 0.3 Mlig455_061304

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_061304 {REF} {Length: 501} {NoTransDecoderORF} {RNA1310_53217}
39. MligTC455_18373 45 0.93 Mlig455_046441

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_046441 {REF} {Length: 3745} {Pfam: C2H2-type zinc finger [PF13894.8, score=47.0]; Zinc finger, C2H2 type [PF00096.28, score=32.6]; C2H2 type zinc-finger (1 copy) [PF16293.7, score=22.6]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=21.7]} {RNA1509_21763} {RNA1310_9886.1} {RNA815_7892}
40. MligTC455_38749 34 0.71 Mlig455_041321

Neo: -

Age: Up-Down-Down

 AP3M1 0.956 - - - - 0.956 - Mlig455_041321 {REF} {Length: 4665} {Pfam: Adaptor complexes medium subunit family [PF00928.23, score=81.9]; Muniscin C-terminal mu homology domain [PF10291.11, score=22.2]} {Human: ENSG00000185009, AP3M1, adaptor related protein complex 3 subunit mu 1, [Score=140, Expect=5e-40]; ENSG00000070718, AP3M2, adaptor related protein complex 3 subunit mu 2, [Score=136, Expect=2e-38]} {Mouse: ENSMUSG00000021824, Ap3m1, adaptor-related protein complex 3, mu 1 subunit, [Score=140, Expect=6e-42]; ENSMUSG00000031539, Ap3m2, adaptor-related protein complex 3, mu 2 subunit, [Score=139, Expect=2e-39]} {Dmel: FBgn0000330, cm, carmine, [Score=130, Expect=3e-36]} {Celegans: WBGene00000164, apm-3, AdaPtin, Mu/medium chain (Clathrin associated complex), [Score=122, Expect=1e-33]} {Smed: dd_Smed_v6_6368_0_1, dd_Smed_v6_6368_0_1, [Score=99.0, Expect=9e-25]} {RNA1509_37010} {RNA1310_17840} {RNA815_13395}
41. MligTC455_26152 40 0.83 Mlig455_018456

Neo: -

Age: -

 TMEM129 0.955 - - - - 0.955 - Mlig455_018456 {REF} {Length: 2195} {TRANSSPLICED} {Pfam: Putative transmembrane protein precursor [PF10272.11, score=367.7]} {Human: ENSG00000168936, TMEM129, transmembrane protein 129, [RH, Score=264, Expect=3e-85]} {Mouse: ENSMUSG00000019295, Tmem129, transmembrane protein 129, [RH, Score=263, Expect=4e-85]} {Dmel: FBgn0037241, CG14646, [RH, Score=184, Expect=8e-54]} {Smed: dd_Smed_v6_8706_0_1, dd_Smed_v6_8706_0_1, [RH, Score=259, Expect=3e-83]} {RNA1509_26687} {RNA1310_18016, RNA1509_26687} {RNA1509_26687, RNA815_29598}
42. MligTC455_54845 7 0.16 Mlig455_011372

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_011372 {REF} {Length: 312} {NoTransDecoderORF}
43. MligTC455_27751 8 0.16 Mlig455_006257

Neo: -

Age: Up-Down-Up

 ALKBH3 0.953 - - - - 0.953 - Mlig455_006257 {REF} {Length: 2864} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=76.9]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=108, Expect=3e-25]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=101, Expect=5e-23]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [Score=81.6, Expect=1e-16]} {RNA1509_23004} {RNA1310_19653} {RNA815_20132}
44. MligTC455_34656 48 1 Mlig455_058210

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.537

Region-enriched R2: 5.874/0.03747

 PPEF1 0.953 - - - - 0.953 - Mlig455_058210 {REF} {Length: 2937} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=90.9]; EF-hand domain pair [PF13499.8, score=63.3]; EF hand [PF00036.34, score=53.9]; PPP5 TPR repeat region [PF08321.14, score=45.9]; EF-hand domain pair [PF13833.8, score=45.7]; EF-hand domain [PF13405.8, score=43.1]; EF hand [PF13202.8, score=41.7]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=20.2]} {Human: ENSG00000086717, PPEF1, protein phosphatase with EF-hand domain 1, [Score=533, Expect=0.0]} {Mouse: ENSMUSG00000062168, Ppef1, protein phosphatase with EF hand calcium-binding domain 1, [Score=512, Expect=1e-174]} {Dmel: FBgn0265959, rdgC, retinal degeneration C, [Score=489, Expect=6e-166]} {Celegans: WBGene00003969, pef-1, Serine/threonine-protein phosphatase with EF-hands pef-1, [Score=563, Expect=0.0]} {Smed: dd_Smed_v6_11874_0_1, dd_Smed_v6_11874_0_1, [Score=642, Expect=0.0]} {RNA1509_3508} {RNA1310_11714.1} {RNA815_4130}
45. MligTC455_07297 15 0.32 Mlig455_010586

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_010586 {REF} {Length: 1011} {RNA1509_30765} {RNA1310_42208} {RNA815_13073}
46. MligTC455_16691 57 1.18 Mlig455_018665

Neo: -

Age: -

Region-enriched R8: 7.774/0.00104
Region-enriched R7: 6.459/0.00277

 0.952 - - - - 0.952 - Mlig455_018665 {REF} {Length: 709} {NoTransDecoderORF} {RNA1509_25022} {RNA1310_77757} {RNA815_23623}
47. MligTC455_24612 12 0.25 Mlig455_000425, Mlig455_000489, Mlig455_000526, Mlig455_024858

Neo: -

Age: -

 SCN1A 0.952 - - - - 0.952 -

Mlig455_000425 {REF} {Length: 2186} {Pfam: Ion transport protein [PF00520.33, score=296.1]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=31.9]; Polycystin cation channel [PF08016.14, score=23.2]} {Human: ENSG00000144285, SCN1A, sodium voltage-gated channel alpha subunit 1, [Score=502, Expect=4e-157]; ENSG00000136531, SCN2A, sodium voltage-gated channel alpha subunit 2, [Score=498, Expect=2e-156]; ENSG00000169432, SCN9A, sodium voltage-gated channel alpha subunit 9, [Score=490, Expect=7e-153]; ENSG00000153253, SCN3A, sodium voltage-gated channel alpha subunit 3, [Score=486, Expect=2e-151]; ENSG00000183873, SCN5A, sodium voltage-gated channel alpha subunit 5, [Score=486, Expect=9e-152]; ENSG00000196876, SCN8A, sodium voltage-gated channel alpha subunit 8, [Score=481, Expect=1e-149]; ENSG00000007314, SCN4A, sodium voltage-gated channel alpha subunit 4, [Score=481, Expect=4e-150]} {Mouse: ENSMUSG00000064329, Scn1a, sodium channel, voltage-gated, type I, alpha, [Score=500, Expect=7e-157]; ENSMUSG00000001027, Scn4a, sodium channel, voltage-gated, type IV, alpha, [Score=494, Expect=3e-155]; ENSMUSG00000075318, Scn2a, sodium channel, voltage-gated, type II, alpha, [Score=490, Expect=4e-153]; ENSMUSG00000057182, Scn3a, sodium channel, voltage-gated, type III, alpha, [Score=484, Expect=2e-151]; ENSMUSG00000075316, Scn9a, sodium channel, voltage-gated, type IX, alpha, [Score=484, Expect=4e-151]; ENSMUSG00000032511, Scn5a, sodium channel, voltage-gated, type V, alpha, [Score=483, Expect=1e-150]; ENSMUSG00000023033, Scn8a, sodium channel, voltage-gated, type VIII, alpha, [Score=481, Expect=5e-150]; ENSMUSG00000034533, Scn10a, sodium channel, voltage-gated, type X, alpha, [Score=475, Expect=6e-148]} {Dmel: FBgn0285944, para, paralytic, [Score=538, Expect=2e-170]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [Score=189, Expect=6e-50]} {Smed: dd_Smed_v6_13973_0_1, dd_Smed_v6_13973_0_1, [Score=610, Expect=0.0]} {RNA1509_56147} {RNA1310_51142}

Mlig455_000489 {REF} {Length: 2384} {Pfam: Ion transport protein [PF00520.33, score=296.0]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=31.7]; Polycystin cation channel [PF08016.14, score=23.0]} {Human: ENSG00000144285, SCN1A, sodium voltage-gated channel alpha subunit 1, [Score=504, Expect=4e-157]; ENSG00000136531, SCN2A, sodium voltage-gated channel alpha subunit 2, [Score=501, Expect=2e-156]; ENSG00000169432, SCN9A, sodium voltage-gated channel alpha subunit 9, [Score=492, Expect=9e-153]; ENSG00000183873, SCN5A, sodium voltage-gated channel alpha subunit 5, [Score=489, Expect=1e-151]; ENSG00000153253, SCN3A, sodium voltage-gated channel alpha subunit 3, [Score=488, Expect=2e-151]; ENSG00000196876, SCN8A, sodium voltage-gated channel alpha subunit 8, [Score=483, Expect=9e-150]; ENSG00000007314, SCN4A, sodium voltage-gated channel alpha subunit 4, [Score=482, Expect=8e-150]; ENSG00000185313, SCN10A, sodium voltage-gated channel alpha subunit 10, [Score=479, Expect=4e-148]} {Mouse: ENSMUSG00000064329, Scn1a, sodium channel, voltage-gated, type I, alpha, [Score=502, Expect=1e-156]; ENSMUSG00000001027, Scn4a, sodium channel, voltage-gated, type IV, alpha, [Score=496, Expect=3e-155]; ENSMUSG00000075318, Scn2a, sodium channel, voltage-gated, type II, alpha, [Score=493, Expect=2e-153]; ENSMUSG00000075316, Scn9a, sodium channel, voltage-gated, type IX, alpha, [Score=487, Expect=4e-151]; ENSMUSG00000032511, Scn5a, sodium channel, voltage-gated, type V, alpha, [Score=486, Expect=1e-150]; ENSMUSG00000057182, Scn3a, sodium channel, voltage-gated, type III, alpha, [Score=486, Expect=4e-151]; ENSMUSG00000023033, Scn8a, sodium channel, voltage-gated, type VIII, alpha, [Score=483, Expect=6e-150]; ENSMUSG00000034533, Scn10a, sodium channel, voltage-gated, type X, alpha, [Score=478, Expect=7e-148]} {Dmel: FBgn0285944, para, paralytic, [Score=541, Expect=1e-170]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [Score=191, Expect=5e-50]} {Smed: dd_Smed_v6_14386_0_1, dd_Smed_v6_14386_0_1, [Score=627, Expect=0.0]} {RNA1509_56147} {RNA1310_51142}

Mlig455_000526 {REF} {Length: 2384} {Pfam: Ion transport protein [PF00520.33, score=296.7]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=31.7]; Polycystin cation channel [PF08016.14, score=22.9]} {Human: ENSG00000144285, SCN1A, sodium voltage-gated channel alpha subunit 1, [Score=503, Expect=3e-157]; ENSG00000136531, SCN2A, sodium voltage-gated channel alpha subunit 2, [Score=501, Expect=2e-156]; ENSG00000169432, SCN9A, sodium voltage-gated channel alpha subunit 9, [Score=492, Expect=8e-153]; ENSG00000183873, SCN5A, sodium voltage-gated channel alpha subunit 5, [Score=489, Expect=8e-152]; ENSG00000153253, SCN3A, sodium voltage-gated channel alpha subunit 3, [Score=488, Expect=2e-151]; ENSG00000196876, SCN8A, sodium voltage-gated channel alpha subunit 8, [Score=484, Expect=1e-149]; ENSG00000007314, SCN4A, sodium voltage-gated channel alpha subunit 4, [Score=483, Expect=6e-150]; ENSG00000185313, SCN10A, sodium voltage-gated channel alpha subunit 10, [Score=478, Expect=5e-148]} {Mouse: ENSMUSG00000064329, Scn1a, sodium channel, voltage-gated, type I, alpha, [Score=502, Expect=1e-156]; ENSMUSG00000001027, Scn4a, sodium channel, voltage-gated, type IV, alpha, [Score=496, Expect=3e-155]; ENSMUSG00000075318, Scn2a, sodium channel, voltage-gated, type II, alpha, [Score=493, Expect=3e-153]; ENSMUSG00000075316, Scn9a, sodium channel, voltage-gated, type IX, alpha, [Score=487, Expect=4e-151]; ENSMUSG00000057182, Scn3a, sodium channel, voltage-gated, type III, alpha, [Score=486, Expect=4e-151]; ENSMUSG00000032511, Scn5a, sodium channel, voltage-gated, type V, alpha, [Score=486, Expect=2e-150]; ENSMUSG00000023033, Scn8a, sodium channel, voltage-gated, type VIII, alpha, [Score=484, Expect=5e-150]; ENSMUSG00000034533, Scn10a, sodium channel, voltage-gated, type X, alpha, [Score=478, Expect=7e-148]} {Dmel: FBgn0285944, para, paralytic, [Score=541, Expect=1e-170]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [Score=191, Expect=6e-50]} {Smed: dd_Smed_v6_14386_0_1, dd_Smed_v6_14386_0_1, [Score=628, Expect=0.0]} {RNA1509_56147} {RNA1310_51142}

Mlig455_024858 {REF} {Length: 1954} {Pfam: Ion transport protein [PF00520.33, score=318.3]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=32.1]; Polycystin cation channel [PF08016.14, score=30.0]} {Human: ENSG00000144285, SCN1A, sodium voltage-gated channel alpha subunit 1, [Score=660, Expect=0.0]; ENSG00000136531, SCN2A, sodium voltage-gated channel alpha subunit 2, [Score=654, Expect=0.0]; ENSG00000169432, SCN9A, sodium voltage-gated channel alpha subunit 9, [Score=649, Expect=0.0]; ENSG00000183873, SCN5A, sodium voltage-gated channel alpha subunit 5, [Score=640, Expect=0.0]; ENSG00000153253, SCN3A, sodium voltage-gated channel alpha subunit 3, [Score=639, Expect=0.0]; ENSG00000007314, SCN4A, sodium voltage-gated channel alpha subunit 4, [Score=635, Expect=0.0]; ENSG00000196876, SCN8A, sodium voltage-gated channel alpha subunit 8, [Score=631, Expect=0.0]; ENSG00000185313, SCN10A, sodium voltage-gated channel alpha subunit 10, [Score=627, Expect=0.0]} {Mouse: ENSMUSG00000064329, Scn1a, sodium channel, voltage-gated, type I, alpha, [Score=655, Expect=0.0]; ENSMUSG00000001027, Scn4a, sodium channel, voltage-gated, type IV, alpha, [Score=652, Expect=0.0]; ENSMUSG00000075318, Scn2a, sodium channel, voltage-gated, type II, alpha, [Score=646, Expect=0.0]; ENSMUSG00000075316, Scn9a, sodium channel, voltage-gated, type IX, alpha, [Score=645, Expect=0.0]; ENSMUSG00000057182, Scn3a, sodium channel, voltage-gated, type III, alpha, [Score=637, Expect=0.0]; ENSMUSG00000032511, Scn5a, sodium channel, voltage-gated, type V, alpha, [Score=635, Expect=0.0]; ENSMUSG00000023033, Scn8a, sodium channel, voltage-gated, type VIII, alpha, [Score=630, Expect=0.0]; ENSMUSG00000034533, Scn10a, sodium channel, voltage-gated, type X, alpha, [Score=623, Expect=0.0]} {Dmel: FBgn0285944, para, paralytic, [Score=701, Expect=0.0]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [Score=268, Expect=3e-77]} {Smed: dd_Smed_v6_14386_0_1, dd_Smed_v6_14386_0_1, [Score=816, Expect=0.0]} {RNA1310_51142}
48. MligTC455_25080 26 0.53 Mlig455_003599

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_003599 {REF} {Length: 5206} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=49.2]} {Smed: dd_Smed_v6_12037_0_1, dd_Smed_v6_12037_0_1, [Score=50.8, Expect=1e-07]} {RNA1509_27878} {RNA1310_28023} {RNA815_19588}
49. MligTC455_14909 13 0.27 Mlig455_002498

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_002498 {REF} {Length: 2555} {NoTransDecoderORF} {RNA1509_58323} {RNA1310_36708} {RNA815_57793}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA