Data search
Results for MligTC455_25675
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_25675 | 122 | 2.55 | Mlig455_058490 | Neo: - Age: - |
PUS1 | Mlig455_058490 {REF} {Length: 2579} {TRANSSPLICED} {Pfam: tRNA pseudouridine synthase [PF01416.22, score=47.6]} {Human: ENSG00000177192, PUS1, pseudouridylate synthase 1, [Score=208, Expect=1e-63]} {Mouse: ENSMUSG00000029507, Pus1, pseudouridine synthase 1, [Score=209, Expect=7e-64]} {Dmel: FBgn0038811, PUS1, pseudouridylate synthase 1, [Score=204, Expect=5e-62]} {Celegans: WBGene00004248, pus-1, tRNA pseudouridine synthase, [Score=185, Expect=8e-55]} {Smed: dd_Smed_v6_7557_0_1, dd_Smed_v6_7557_0_1, [Score=235, Expect=8e-75]} {RNA1509_36652} {RNA1310_11912} {RNA815_6183.1} |
Cumulative graph for MligTC455_25675
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.843 | 2.189 | 0.99961 | 1.00000 | |
| RegionR2 | 2.321 | 2.189 | 0.13720 | 0.46027 | |
| RegionR3 | 0.138 | 2.189 | 0.72582 | 1.00000 | |
| RegionR4 | 0.955 | 2.189 | 0.53804 | 0.86096 | |
| RegionR5 | 0.401 | 2.189 | 0.65671 | 1.00000 | |
| RegionR6 | 0.29 | 2.189 | 0.69057 | 1.00000 | |
| RegionR7 | 1.777 | 2.189 | 0.24864 | 0.87474 | |
| RegionR8 | -4.04 | 2.189 | 0.99953 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 2.614 | 2.189 | 0.99988 | 1.00000 | |
| RegenerationR2 | 2.181 | 2.189 | 0.01624 | 0.20984 | |
| RegenerationR3 | 4.479 | 2.189 | 0.00032 | 0.02417 | |
| RegenerationR4 | 3.658 | 2.189 | 0.00456 | 0.09414 | |
| RegenerationR5 | 3.718 | 2.189 | 0.00067 | 0.04315 | |
| RegenerationR6 | 4.462 | 2.189 | 0.00022 | 0.01411 | |
| RegenerationBL | 4.695 | 2.189 | 0.01283 | 0.11639 | |
| RegenerationTP | 4.977 | 2.189 | 0.00753 | 0.14555 |
Genes with expression patterns similar to MligTC455_25675
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_25675 | 122 | 2.55 | Mlig455_058490 | Neo: - Age: - |
PUS1 | 4 | 1.000 | - | - | 1.000 | 1.000 | 1.000 | Mlig455_058490 {REF} {Length: 2579} {TRANSSPLICED} {Pfam: tRNA pseudouridine synthase [PF01416.22, score=47.6]} {Human: ENSG00000177192, PUS1, pseudouridylate synthase 1, [Score=208, Expect=1e-63]} {Mouse: ENSMUSG00000029507, Pus1, pseudouridine synthase 1, [Score=209, Expect=7e-64]} {Dmel: FBgn0038811, PUS1, pseudouridylate synthase 1, [Score=204, Expect=5e-62]} {Celegans: WBGene00004248, pus-1, tRNA pseudouridine synthase, [Score=185, Expect=8e-55]} {Smed: dd_Smed_v6_7557_0_1, dd_Smed_v6_7557_0_1, [Score=235, Expect=8e-75]} {RNA1509_36652} {RNA1310_11912} {RNA815_6183.1} |
| 2. | MligTC455_52346 | 25 | 0.52 | Mlig455_054268 | Neo: - Age: - |
0.976 | - | - | - | 0.976 | - | - | Mlig455_054268 {REF} {Length: 2021} {NoTransDecoderORF} {RNA1509_28752} {RNA1310_23997.1} {RNA815_18824.1} | |
| 3. | MligTC455_27832 | 1170 | 24.38 | Mlig455_048328 | Neo: Irradiation Age: - Region-enriched R5: 1.315/0.00946 |
OPLAH | 0.968 | - | - | - | - | 0.968 | - | Mlig455_048328 {REF} {Length: 9221} {Pfam: Hydantoinase B/oxoprolinase [PF02538.16, score=675.2]; Hydantoinase/oxoprolinase [PF01968.20, score=305.4]; Hydantoinase/oxoprolinase N-terminal region [PF05378.15, score=151.6]; Hydantoinase/oxoprolinase C-terminal domain [PF19278.1, score=26.4]} {Human: ENSG00000178814, OPLAH, 5-oxoprolinase, ATP-hydrolysing, [Score=795, Expect=0.0]} {Mouse: ENSMUSG00000022562, Oplah, 5-oxoprolinase (ATP-hydrolysing), [Score=777, Expect=0.0]} {Dmel: FBgn0034733, CG4752, [Score=756, Expect=0.0]} {Celegans: WBGene00021430, Y38F2AR.12, [Score=762, Expect=0.0]} {Smed: dd_Smed_v6_5008_0_1, dd_Smed_v6_5008_0_1, [Score=845, Expect=0.0]} {RNA1509_2948} {RNA1310_4544} {RNA815_468} |
| 4. | MligTC455_27831 | 1160 | 24.16 | Mlig455_048304 | Neo: - Age: - Region-enriched R5: 1.322/0.01164 |
OPLAH | 0.967 | - | - | - | - | 0.967 | - | Mlig455_048304 {REF} {Length: 1597} {Pfam: Hydantoinase B/oxoprolinase [PF02538.16, score=677.6]; Hydantoinase/oxoprolinase [PF01968.20, score=348.4]; Hydantoinase/oxoprolinase N-terminal region [PF05378.15, score=172.3]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=128.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=113.3]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=76.9]; Integrase zinc binding domain [PF17921.3, score=68.9]; Aspartyl protease [PF13650.8, score=38.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=35.2]; Hydantoinase/oxoprolinase C-terminal domain [PF19278.1, score=25.9]; Retroviral aspartyl protease [PF00077.22, score=24.3]; Aspartyl protease [PF09668.12, score=23.4]; Putative peptidase (DUF1758) [PF05585.14, score=21.1]} {Human: ENSG00000178814, OPLAH, 5-oxoprolinase, ATP-hydrolysing, [Score=800, Expect=0.0]} {Mouse: ENSMUSG00000022562, Oplah, 5-oxoprolinase (ATP-hydrolysing), [Score=779, Expect=0.0]} {Dmel: FBgn0034733, CG4752, [Score=757, Expect=0.0]} {Celegans: WBGene00021430, Y38F2AR.12, [Score=763, Expect=0.0]} {Smed: dd_Smed_v6_5008_0_1, dd_Smed_v6_5008_0_1, [Score=847, Expect=0.0]} {RNA1509_2948} {RNA1310_1508.2} {RNA815_468} |
| 5. | MligTC455_33718 | 27 | 0.56 | Mlig455_067978 | Neo: - Age: - |
0.959 | - | - | - | 0.959 | - | - | Mlig455_067978 {REF} {Length: 1471} {RNA1509_34308} {RNA1310_37957.1} {RNA815_29846} | |
| 6. | MligTC455_23056 | 88 | 1.84 | Mlig455_034100, Mlig455_034111 | Neo: - Age: - Region-enriched R7: 3.593/0.02491 |
KCNV2 | 0.958 | - | - | - | 0.958 | - | - | Mlig455_034100 {REF} {Length: 3594} {Pfam: Ion channel [PF07885.18, score=55.3]; Ligand-gated ion channel [PF00060.28, score=32.0]; Ion transport protein [PF00520.33, score=30.1]} {Human: ENSG00000168263, KCNV2, potassium voltage-gated channel modifier subfamily V member 2, [Score=54.7, Expect=4e-07]; ENSG00000185760, KCNQ5, potassium voltage-gated channel subfamily Q member 5, [Score=52.8, Expect=2e-06]} {Mouse: ENSMUSG00000047298, Kcnv2, potassium channel, subfamily V, member 2, [Score=57.0, Expect=4e-08]} {Dmel: FBgn0003429, slo, slowpoke, [Score=50.4, Expect=4e-06]} {Celegans: WBGene00004830, slo-1, Calcium-activated potassium channel slo-1, [Score=56.6, Expect=4e-08]} {Smed: dd_Smed_v6_9740_0_1, dd_Smed_v6_9740_0_1, [Score=53.5, Expect=3e-07]} {RNA1310_25965.1} {RNA815_19497} Mlig455_034111 {REF} {Length: 3636} {Pfam: Ion channel [PF07885.18, score=55.3]; Ligand-gated ion channel [PF00060.28, score=32.0]; Ion transport protein [PF00520.33, score=30.1]} {Human: ENSG00000168263, KCNV2, potassium voltage-gated channel modifier subfamily V member 2, [Score=54.7, Expect=4e-07]; ENSG00000185760, KCNQ5, potassium voltage-gated channel subfamily Q member 5, [Score=52.8, Expect=2e-06]} {Mouse: ENSMUSG00000047298, Kcnv2, potassium channel, subfamily V, member 2, [Score=57.0, Expect=4e-08]} {Dmel: FBgn0003429, slo, slowpoke, [Score=50.4, Expect=4e-06]} {Celegans: WBGene00004830, slo-1, Calcium-activated potassium channel slo-1, [Score=56.6, Expect=4e-08]} {Smed: dd_Smed_v6_9740_0_1, dd_Smed_v6_9740_0_1, [Score=53.5, Expect=3e-07]} {RNA1310_25965.1} {RNA815_19497} |
| 7. | MligTC455_30667 | 384 | 8 | Mlig455_061046 | Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.395 Region-enriched R3: 1.564/0.04871 |
PTPRC | 0.958 | - | - | - | - | 0.958 | - | Mlig455_061046 {REF} {Length: 4851} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=225.7]; Dual specificity phosphatase, catalytic domain [PF00782.22, score=20.8]} {Human: ENSG00000081237, PTPRC, protein tyrosine phosphatase, receptor type C, [Score=184, Expect=7e-51]; ENSG00000080031, PTPRH, protein tyrosine phosphatase, receptor type H, [Score=180, Expect=2e-49]; ENSG00000127329, PTPRB, protein tyrosine phosphatase, receptor type B, [Score=179, Expect=4e-49]; ENSG00000142949, PTPRF, protein tyrosine phosphatase, receptor type F, [Score=178, Expect=9e-49]; ENSG00000151490, PTPRO, protein tyrosine phosphatase, receptor type O, [Score=177, Expect=3e-48]; ENSG00000105426, PTPRS, protein tyrosine phosphatase, receptor type S, [Score=177, Expect=3e-48]; ENSG00000149177, PTPRJ, protein tyrosine phosphatase, receptor type J, [Score=176, Expect=4e-48]} {Mouse: ENSMUSG00000026395, Ptprc, protein tyrosine phosphatase, receptor type, C, [Score=186, Expect=1e-51]; ENSMUSG00000013236, Ptprs, protein tyrosine phosphatase, receptor type, S, [Score=177, Expect=2e-48]} {Dmel: FBgn0004369, Ptp99A, Protein tyrosine phosphatase 99A, [Score=164, Expect=3e-44]} {Celegans: WBGene00009717, dep-1, Receptor-type tyrosine-protein phosphatase dep-1, [Score=176, Expect=4e-51]} {Smed: dd_Smed_v6_2577_0_1, dd_Smed_v6_2577_0_1, [RH, Score=190, Expect=1e-54]} {RNA1509_19748, RNA1509_24399, RNA1509_8809} {RNA1310_3303.1, RNA1509_19748, RNA1509_24399, RNA1509_8809} {RNA1509_19748, RNA1509_24399, RNA1509_8809, RNA815_718.1} |
| 8. | MligTC455_37246 | 509 | 10.61 | Mlig455_041832 | Neo: - Age: - Region-enriched R4: 1.354/0.02461 |
USP11 | 0.954 | - | - | - | - | - | 0.954 | Mlig455_041832 {REF} {Length: 4516} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=225.3]; DUSP domain [PF06337.14, score=66.9]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=22.3]} {Human: ENSG00000102226, USP11, ubiquitin specific peptidase 11, [Score=470, Expect=2e-150]; ENSG00000135655, USP15, ubiquitin specific peptidase 15, [Score=450, Expect=2e-142]} {Mouse: ENSMUSG00000031066, Usp11, ubiquitin specific peptidase 11, [Score=458, Expect=7e-146]; ENSMUSG00000020124, Usp15, ubiquitin specific peptidase 15, [Score=449, Expect=6e-142]} {Dmel: FBgn0036913, Usp32, Ubiquitin specific protease 32, [Score=224, Expect=7e-60]} {Celegans: WBGene00019259, H34C03.2, Ubiquitin carboxyl-terminal hydrolase, [Score=245, Expect=5e-68]} {Smed: dd_Smed_v6_2112_0_1, dd_Smed_v6_2112_0_1, [Score=338, Expect=3e-102]} {RNA1509_26765} {RNA1310_4184} {RNA815_1198} |
| 9. | MligTC455_20865 | 13 | 0.27 | Mlig455_024704 | Neo: - |
NPDC1 | 0.953 | - | - | - | 0.953 | - | - | Mlig455_024704 {REF} {Length: 2707} {Pfam: Neural proliferation differentiation control-1 protein (NPDC1) [PF06809.13, score=109.7]} {Human: ENSG00000107281, NPDC1, neural proliferation, differentiation and control 1, [RH, Score=114, Expect=1e-29]} {Mouse: ENSMUSG00000015094, Npdc1, neural proliferation, differentiation and control 1, [RH, Score=110, Expect=2e-28]} {Dmel: FBgn0265182, CG44247, [RH, Score=118, Expect=3e-30]} {Celegans: WBGene00000277, cab-1, [RH, Score=76.3, Expect=8e-16]} {Smed: dd_Smed_v6_2985_0_1, dd_Smed_v6_2985_0_1, [Score=94.0, Expect=5e-23]} {RNA1509_28907, RNA1509_49979} {RNA1310_7418, RNA1509_28907} {RNA1509_28907, RNA815_1669.1} |
Berezikov Lab - 2020-2021 © ERIBA