TomoSeq data search

Data search

Results for MligTC455_26373

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_26373

192

4.00

Mlig455_026052

Neo: -

Age: -

RNPC3

Mlig455_026052 {REF} {Length: 1639} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=43.8]; RRM-like domain [PF11835.10, score=19.7]} {Human: ENSG00000185946, RNPC3, RNA binding region (RNP1, RRM) containing 3, [RH, Score=80.1, Expect=2e-15]} {Mouse: ENSMUSG00000027981, Rnpc3, RNA-binding region (RNP1, RRM) containing 3, [RH, Score=82.4, Expect=2e-16]} {Dmel: FBgn0265184, CG44249, [RH, Score=76.3, Expect=1e-14]} {Smed: dd_Smed_v6_13366_0_2, dd_Smed_v6_13366_0_2, [RH, Score=60.8, Expect=8e-10]} {RNA1310_16484.1} {RNA815_22075}

Cumulative graph for MligTC455_26373

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.305	2.748	0.40502	1.00000
RegionR2	0.82	2.748	0.42795	0.81842
RegionR3	0.979	2.748	0.28391	0.82692
RegionR4	1.765	2.748	0.04268	0.17311
RegionR5	1.479	2.748	0.04782	0.18164
RegionR6	0.696	2.748	0.47188	1.00000
RegionR7	-2.411	2.748	0.99959	1.00000
RegionR8	0.976	2.748	0.50632	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.869	2.748	0.99992	1.00000
RegenerationR2	0.47	2.748	0.32924	0.76695
RegenerationR3	0.029	2.748	0.96025	1.00000
RegenerationR4	-0.132	2.748	0.80098	0.98679
RegenerationR5	-0.262	2.748	0.56633	0.89454
RegenerationR6	0.667	2.748	0.25087	0.60044
RegenerationBL	0.996	2.748	0.32067	0.68765
RegenerationTP	1.656	2.748	0.16674	0.59805

Genes with expression patterns similar to MligTC455_26373

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_26373	192	4	Mlig455_026052	Neo: - Age: -	RNPC3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_026052 {REF} {Length: 1639} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=43.8]; RRM-like domain [PF11835.10, score=19.7]} {Human: ENSG00000185946, RNPC3, RNA binding region (RNP1, RRM) containing 3, [RH, Score=80.1, Expect=2e-15]} {Mouse: ENSMUSG00000027981, Rnpc3, RNA-binding region (RNP1, RRM) containing 3, [RH, Score=82.4, Expect=2e-16]} {Dmel: FBgn0265184, CG44249, [RH, Score=76.3, Expect=1e-14]} {Smed: dd_Smed_v6_13366_0_2, dd_Smed_v6_13366_0_2, [RH, Score=60.8, Expect=8e-10]} {RNA1310_16484.1} {RNA815_22075}
2.	MligTC455_53726	206	4.3	Mlig455_025696	Neo: - Age: Down-Down-Up	RBCK1	1.804	-	-	-	-	0.953	0.851	Mlig455_025696 {REF} {Length: 2805} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=36.6]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.6]; Ring finger domain [PF13639.8, score=20.1]} {Human: ENSG00000125826, RBCK1, RANBP2-type and C3HC4-type zinc finger containing 1, [Score=191, Expect=4e-57]} {Mouse: ENSMUSG00000027466, Rbck1, RanBP-type and C3HC4-type zinc finger containing 1, [Score=189, Expect=2e-56]} {Smed: dd_Smed_v6_1293_0_1, dd_Smed_v6_1293_0_1, [Score=244, Expect=1e-78]} {RNA1509_40724} {RNA1310_9208.1} {RNA815_11140}
3.	MligTC455_42641	312	6.5	Mlig455_030153	Neo: Irradiation Age: - Region-enriched R4: 2.057/0.01945	FBXL6	0.959	-	-	-	0.959	-	-	Mlig455_030153 {REF} {Length: 2171} {TRANSSPLICED} {Human: ENSG00000285442, FBXL6, F-box and leucine rich repeat protein 6, [Score=51.2, Expect=3e-06]; ENSG00000182325, FBXL6, F-box and leucine rich repeat protein 6, [Score=51.2, Expect=3e-06]} {Mouse: ENSMUSG00000022559, Fbxl6, F-box and leucine-rich repeat protein 6, [Score=52.8, Expect=8e-07]} {RNA1509_8614} {RNA1310_11540, RNA1509_8614} {RNA1509_8614, RNA815_3767}
4.	MligTC455_39898	738	15.38	Mlig455_030521	Neo: Irradiation Age: - Region-enriched R4: 2.375/0.00002	ZNF569	0.956	-	-	-	-	0.956	-	Mlig455_030521 {REF} {Length: 2607} {TRANSSPLICED} {Pfam: Zinc-finger double domain [PF13465.8, score=113.0]; Zinc finger, C2H2 type [PF00096.28, score=73.4]; C2H2-type zinc finger [PF13894.8, score=62.0]; Zinc-finger of C2H2 type [PF12874.9, score=25.8]; C2H2-type zinc finger [PF13912.8, score=22.8]; zinc-finger of a C2HC-type [PF13913.8, score=22.2]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=21.9]} {Human: ENSG00000196437, ZNF569, zinc finger protein 569, [Score=167, Expect=2e-44]; ENSG00000278129, ZNF8, zinc finger protein 8, [Score=167, Expect=5e-45]; ENSG00000160961, ZNF333, zinc finger protein 333, [Score=166, Expect=4e-44]; ENSG00000171827, ZNF570, zinc finger protein 570, [Score=164, Expect=6e-44]; ENSG00000130182, ZSCAN10, zinc finger and SCAN domain containing 10, [Score=163, Expect=2e-43]; ENSG00000188321, ZNF559, zinc finger protein 559, [Score=162, Expect=3e-43]; ENSG00000175691, ZNF77, zinc finger protein 77, [Score=162, Expect=3e-43]; ENSG00000187801, ZFP69B, ZFP69 zinc finger protein B, [Score=162, Expect=1e-43]; ENSG00000182318, ZSCAN22, zinc finger and SCAN domain containing 22, [Score=160, Expect=5e-43]; ENSG00000172006, ZNF554, zinc finger protein 554, [Score=160, Expect=8e-43]; ENSG00000189042, ZNF567, zinc finger protein 567, [Score=159, Expect=6e-42]; ENSG00000159917, ZNF235, zinc finger protein 235, [Score=159, Expect=1e-41]; ENSG00000274349, ZNF658, zinc finger protein 658, [Score=159, Expect=5e-41]; ENSG00000167384, ZNF180, zinc finger protein 180, [Score=159, Expect=9e-42]; ENSG00000268696, ZNF723, zinc finger protein 723, [Score=159, Expect=1e-42]; ENSG00000170100, ZNF778, zinc finger protein 778, [Score=159, Expect=1e-41]; ENSG00000196597, ZNF782, zinc finger protein 782, [Score=159, Expect=1e-41]; ENSG00000198440, ZNF583, zinc finger protein 583, [Score=159, Expect=5e-42]} {Mouse: ENSMUSG00000045519, Zfp560, zinc finger protein 560, [Score=170, Expect=2e-45]; ENSMUSG00000066880, Zfp617, zinc finger protein 617, [Score=169, Expect=5e-46]; ENSMUSG00000059975, Zfp74, zinc finger protein 74, [Score=167, Expect=2e-44]; ENSMUSG00000032425, Zfp949, zinc finger protein 949, [Score=166, Expect=1e-44]; ENSMUSG00000064141, Zfp69, zinc finger protein 69, [Score=165, Expect=3e-44]; ENSMUSG00000060397, Zfp128, zinc finger protein 128, [Score=165, Expect=2e-44]; ENSMUSG00000031079, Zfp300, zinc finger protein 300, [Score=164, Expect=7e-44]; ENSMUSG00000068962, Zfp114, zinc finger protein 114, [Score=163, Expect=1e-43]; ENSMUSG00000022526, Zfp251, zinc finger protein 251, [Score=162, Expect=4e-43]; ENSMUSG00000060510, Zfp266, zinc finger protein 266, [Score=162, Expect=3e-43]; ENSMUSG00000063108, Zfp26, zinc finger protein 26, [Score=162, Expect=2e-42]; ENSMUSG00000091474, 2610021A01Rik, RIKEN cDNA 2610021A01 gene, [Score=162, Expect=1e-42]} {Dmel: FBgn0038301, CG6654, [Score=159, Expect=3e-42]} {Celegans: WBGene00012639, fezf-1, FEZ Family zinc finger protein, [Score=137, Expect=1e-37]} {Smed: dd_Smed_v6_26394_0_1, dd_Smed_v6_26394_0_1, [Score=141, Expect=4e-39]} {RNA1509_12331, RNA1509_18316, RNA1509_37936} {RNA1310_8262, RNA1509_12331, RNA1509_18316, RNA1509_37936} {RNA1509_12331, RNA1509_18316, RNA1509_37936, RNA815_4306.2}
5.	MligTC455_32342	680	14.16	Mlig455_013465	Neo: Int S/G2/M Age: - Region-enriched R4: 1.913/0.00241	EIF2AK1	0.954	-	-	-	-	0.954	-	Mlig455_013465 {REF} {Length: 4319} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=146.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=88.8]} {Human: ENSG00000086232, EIF2AK1, eukaryotic translation initiation factor 2 alpha kinase 1, [RH, Score=177, Expect=6e-47]} {Mouse: ENSMUSG00000029613, Eif2ak1, eukaryotic translation initiation factor 2 alpha kinase 1, [RH, Score=139, Expect=5e-34]} {Dmel: FBgn0037327, PEK, pancreatic eIF-2alpha kinase, [Score=165, Expect=4e-42]} {Celegans: WBGene00003970, pek-1, Eukaryotic translation initiation factor 2-alpha kinase pek-1, [Score=100, Expect=1e-21]} {Smed: dd_Smed_v6_8210_0_1, dd_Smed_v6_8210_0_1, [Score=142, Expect=1e-34]} {RNA1509_13116, RNA1509_17895, RNA1509_33519, RNA1509_48018} {RNA1310_9794.1, RNA1509_13116, RNA1509_17895, RNA1509_33519, RNA1509_48018} {RNA1509_13116, RNA1509_17895, RNA1509_33519, RNA1509_48018, RNA815_2641}

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