TomoSeq data search

Data search

Results for MligTC455_26429

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_26429

2352

49.01

Mlig455_031830

Neo: -

Age: Up-Down-Up

VPS13C

Mlig455_031830 {REF} {Length: 3571} {Pfam: First Longin domain of INTU, CCZ1 and HPS4 [PF19031.2, score=34.3]} {Human: ENSG00000129003, VPS13C, vacuolar protein sorting 13 homolog C, [Score=55.5, Expect=3e-07]; ENSG00000197969, VPS13A, vacuolar protein sorting 13 homolog A, [Score=52.8, Expect=2e-06]} {Mouse: ENSMUSG00000035284, Vps13c, vacuolar protein sorting 13C, [Score=56.2, Expect=1e-07]} {Dmel: FBgn0033194, Vps13, Vacuolar protein sorting 13, [Score=59.3, Expect=9e-09]} {RNA1509_56944} {RNA1310_9435} {RNA815_39.1}

Cumulative graph for MligTC455_26429

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.787	5.684	0.22490	0.86874
RegionR2	0.027	5.684	0.93150	1.00000
RegionR3	0.183	5.684	0.47528	0.97964
RegionR4	0.188	5.684	0.54807	0.86921
RegionR5	-0.026	5.684	0.91728	1.00000
RegionR6	-0.116	5.684	0.66661	1.00000
RegionR7	0.373	5.684	0.20225	0.81063
RegionR8	0.159	5.684	0.64229	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.221	5.684	0.81917	1.00000
RegenerationR2	0.202	5.684	0.49001	0.86755
RegenerationR3	0.187	5.684	0.55388	0.88579
RegenerationR4	-0.038	5.684	0.90998	1.00000
RegenerationR5	0.251	5.684	0.41334	0.80770
RegenerationR6	0.017	5.684	0.95785	1.00000
RegenerationBL	-0.625	5.684	0.07246	0.31376
RegenerationTP	0.19	5.684	0.57313	0.94613

Genes with expression patterns similar to MligTC455_26429

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_26429	2352	49.01	Mlig455_031830	Neo: - Age: Up-Down-Up	VPS13C	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_031830 {REF} {Length: 3571} {Pfam: First Longin domain of INTU, CCZ1 and HPS4 [PF19031.2, score=34.3]} {Human: ENSG00000129003, VPS13C, vacuolar protein sorting 13 homolog C, [Score=55.5, Expect=3e-07]; ENSG00000197969, VPS13A, vacuolar protein sorting 13 homolog A, [Score=52.8, Expect=2e-06]} {Mouse: ENSMUSG00000035284, Vps13c, vacuolar protein sorting 13C, [Score=56.2, Expect=1e-07]} {Dmel: FBgn0033194, Vps13, Vacuolar protein sorting 13, [Score=59.3, Expect=9e-09]} {RNA1509_56944} {RNA1310_9435} {RNA815_39.1}
2.	MligTC455_26430	1895	39.48	Mlig455_047686	Neo: - Age: Up-Down-Down	VPS13C	4.612	0.925	0.977	0.770	0.959	0.981	-	Mlig455_047686 {REF} {Length: 4563} {Pfam: Vacuolar-sorting-associated 13 protein C-terminal [PF16909.7, score=172.3]; SHR-binding domain of vacuolar-sorting associated protein 13 [PF06650.14, score=71.6]} {Human: ENSG00000129003, VPS13C, vacuolar protein sorting 13 homolog C, [RH, Score=521, Expect=2e-156]} {Mouse: ENSMUSG00000035284, Vps13c, vacuolar protein sorting 13C, [Score=538, Expect=1e-162]} {Dmel: FBgn0033194, Vps13, Vacuolar protein sorting 13, [Score=495, Expect=3e-148]} {Celegans: WBGene00011629, T08G11.1, [RH, Score=413, Expect=2e-120]} {Smed: dd_Smed_v6_1648_0_1, dd_Smed_v6_1648_0_1, [Score=555, Expect=1e-168]} {RNA1509_14872} {RNA1310_3294.1, RNA1509_14872} {RNA1509_14872, RNA815_39.1}
3.	MligTC455_49906	388	8.08	Mlig455_022773	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.248	MKS1	0.964	-	-	-	-	-	0.964	Mlig455_022773 {REF} {Length: 3184} {Pfam: Ciliary basal body-associated, B9 protein [PF07162.13, score=162.5]} {Human: ENSG00000011143, MKS1, Meckel syndrome, type 1, [RH, Score=221, Expect=8e-64]} {Mouse: ENSMUSG00000034121, Mks1, Meckel syndrome, type 1, [RH, Score=217, Expect=1e-62]} {Dmel: FBgn0030395, Mks1, Meckel syndrome, type 1, [RH, Score=80.9, Expect=1e-15]} {Smed: dd_Smed_v6_14053_0_1, dd_Smed_v6_14053_0_1, [RH, Score=233, Expect=3e-69]} {RNA1509_25392, RNA1509_54823, RNA1509_59599} {RNA1310_11277.1, RNA1509_25392, RNA1509_54823, RNA1509_59599} {RNA1509_25392, RNA1509_54823, RNA1509_59599, RNA815_3920.1}
4.	MligTC455_51575	571	11.89	Mlig455_022958	Neo: - Age: Up-Down-Down	CCDC57	0.954	-	-	-	-	-	0.954	Mlig455_022958 {REF} {Length: 3808} {Human: ENSG00000176155, CCDC57, coiled-coil domain containing 57, [RH, Score=111, Expect=2e-24]} {Smed: dd_Smed_v6_10967_0_1, dd_Smed_v6_10967_0_1, [RH, Score=201, Expect=1e-53]} {RNA1509_12720, RNA1509_57308, RNA1509_57386, RNA1509_9404} {RNA1310_3169, RNA1509_12720, RNA1509_57308, RNA1509_57386, RNA1509_9404} {RNA1509_12720, RNA1509_57308, RNA1509_57386, RNA1509_9404, RNA815_2625}
5.	MligTC455_29352	125	2.6	Mlig455_006316	Neo: - Age: Up-Down-Down Regeneration-upregulated R4: 4.341 Regeneration-enriched R4: 4.341		0.951	-	-	-	-	0.951	-	Mlig455_006316 {REF} {Length: 1920} {RNA1509_9793} {RNA1310_2481, RNA1509_9793} {RNA1509_9793, RNA815_1756}
6.	MligTC455_10674	457	9.51	Mlig455_033481	Neo: - Age: Down-Up-Down		0.95	-	-	-	-	0.950	-	Mlig455_033481 {REF} {Length: 2182} {Smed: dd_Smed_v6_5091_0_1, dd_Smed_v6_5091_0_1, [RH, Score=154, Expect=1e-45]} {RNA1509_8208} {RNA1310_11510} {RNA815_4269}
7.	MligTC455_18734	392	8.18	Mlig455_026722	Neo: - Age: -	SIDT1	0.95	-	-	-	-	-	0.950	Mlig455_026722 {REF} {Length: 4383} {Pfam: dsRNA-gated channel SID-1 [PF13965.8, score=676.5]} {Human: ENSG00000072858, SIDT1, SID1 transmembrane family member 1, [RH, Score=638, Expect=0.0]} {Mouse: ENSMUSG00000022696, Sidt1, SID1 transmembrane family, member 1, [RH, Score=612, Expect=0.0]} {Celegans: WBGene00006477, chup-1, CHolesterol UPtake associated, [RH, Score=300, Expect=4e-89]} {Smed: dd_Smed_v6_8407_0_1, dd_Smed_v6_8407_0_1, [RH, Score=491, Expect=6e-162]} {RNA1509_19245} {RNA1310_4118} {RNA815_1796}

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