M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27183

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27183 1888 39.34 Mlig455_005388, Mlig455_005412

Neo: -

Age: -

Mlig455_005388 {REF} {Length: 49} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_4800.2}

Mlig455_005412 {REF} {Length: 35} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_4800.2}

Cumulative graph for MligTC455_27183

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.013 5.372 0.99539 1.00000
RegionR2 0.932 5.372 0.34210 0.73423
RegionR3 0.699 5.372 0.50846 0.99770
RegionR4 -1.588 5.372 0.16820 0.43048
RegionR5 0.151 5.372 0.86321 1.00000
RegionR6 -1.269 5.372 0.19750 0.76636
RegionR7 1.757 5.372 0.03476 0.35503
RegionR8 -0.668 5.372 0.53475 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.216 5.372 0.20492 0.94513
RegenerationR2 -1.217 5.372 0.31203 0.75201
RegenerationR3 -0.756 5.372 0.50303 0.85832
RegenerationR4 2.505 5.372 0.04527 0.34303
RegenerationR5 0.501 5.372 0.69324 0.94908
RegenerationR6 3.981 5.372 0.00207 0.05188
RegenerationBL 0.89 5.372 0.40153 0.77038
RegenerationTP 1.225 5.372 0.32157 0.76595


Genes with expression patterns similar to MligTC455_27183

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27183 1888 39.34 Mlig455_005388, Mlig455_005412

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_005388 {REF} {Length: 49} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_4800.2}

Mlig455_005412 {REF} {Length: 35} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_4800.2}
2. MligTC455_27179 1219 25.39 Mlig455_005503

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=-0.871

 5.847 0.972 0.992 0.990 0.991 0.904 0.998 Mlig455_005503 {REF} {Length: 669} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_80.1}
3. MligTC455_27177 1315 27.39 Mlig455_005375

Neo: -

Age: Down-Up-Up

 5.782 0.972 0.991 0.942 0.973 0.912 0.992 Mlig455_005375 {REF} {Length: 484} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_80.1}
4. MligTC455_27180 1378 28.71 Mlig455_061198

Neo: -

Age: Up-Up-Up

 5.602 0.964 0.826 0.951 0.936 0.931 0.994 Mlig455_061198 {REF} {Length: 1211} {NoTransDecoderORF} {RNA1509_3, RNA1509_60} {RNA1310_851.1, RNA1509_60} {RNA1509_60, RNA815_80.1}
5. MligTC455_27156 4417 92.01 Mlig455_005373

Neo: -

Age: -

 2.4 0.734 0.712 - - - 0.954 Mlig455_005373 {REF} {Length: 439} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_80.1}
6. MligTC455_28040 346 7.21 Mlig455_005430

Neo: -

Age: Down-Down-Up

 1.907 - 0.932 - - - 0.975 Mlig455_005430 {REF} {Length: 2079} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=71.8]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=57.4, Expect=7e-10]} {RNA1509_22337} {RNA1310_54194} {RNA815_6853}
7. MligTC455_28037 11457 238.68 Mlig455_005415

Neo: Int S/G2/M

Age: -

 1.739 - 0.753 - - - 0.986 Mlig455_005415 {REF} {Length: 322} {TRANSSPLICED} {RNA1509_1780, RNA1509_6308} {RNA1310_8217, RNA1509_6308} {RNA1509_6308, RNA815_80.1}
8. MligTC455_28036 11090 231.03 Mlig455_005406

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=1.726

 1.738 - 0.749 - - - 0.989 Mlig455_005406 {REF} {Length: 318} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1780} {RNA1310_8217} {RNA815_80.1}
9. MligTC455_36995 217 4.52 Mlig455_040359

Neo: -

Age: Down-Up-Up

Region-enriched R2: 6.534/0.00155
Region-enriched R3: 5.197/0.00130

 0.965 - - 0.965 - - - Mlig455_040359 {REF} {Length: 759} {RNA1509_59636} {RNA1310_6145.1, RNA1509_59636} {RNA1509_59636, RNA815_27612}
10. MligTC455_43726 738 15.37 Mlig455_031091, Mlig455_031126

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.725

Region-specific R3: 8.783

Region-enriched R3: 7.816/0.00000

 0.963 - - 0.963 - - -

Mlig455_031091 {REF} {Length: 2108} {TRANSSPLICED} {RNA1509_10925, RNA1509_41471} {RNA1310_123716, RNA1509_10925, RNA1509_41471} {RNA1509_10925, RNA1509_41471, RNA815_13649.1}

Mlig455_031126 {REF} {Length: 1113} {TRANSSPLICED} {RNA1509_25603} {RNA1310_89218} {RNA815_13649.1}
11. MligTC455_18700 19 0.4 Mlig455_003655

Neo: -

Age: -

 0.96 - - 0.960 - - - Mlig455_003655 {REF} {Length: 471} {NoTransDecoderORF} {RNA1310_85204}
12. MligTC455_45851 33 0.69 Mlig455_020386

Neo: -

Age: -

 0.96 - - 0.960 - - - Mlig455_020386 {REF} {Length: 590} {RNA1509_48193} {RNA1310_97125}
13. MligTC455_05913 13 0.28 Mlig455_064325, Mlig455_064355

Neo: -

Age: -

 0.959 - - 0.959 - - -

Mlig455_064325 {REF} {Length: 2163} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=137.7]} {RNA1509_19020} {RNA1310_13852} {RNA815_7058}

Mlig455_064355 {REF} {Length: 470} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=33.1]} {RNA1509_19020} {RNA1310_13852} {RNA815_7058}
14. MligTC455_08017 5 0.11 Mlig455_027000

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_027000 {REF} {Length: 1360} {TRANSSPLICED} {RNA1310_47153} {RNA815_22265}
15. MligTC455_09290 23 0.48 Mlig455_057456

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_057456 {REF} {Length: 350} {NoTransDecoderORF} {RNA1310_95940}
16. MligTC455_13832 178 3.71 Mlig455_065431

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_065431 {REF} {Length: 1865} {NoTransDecoderORF} {RNA1509_9010} {RNA1310_38702, RNA1509_9010} {RNA1509_9010, RNA815_4929.1}
17. MligTC455_15805 9 0.19 Mlig455_023117

Neo: -

Age: -

 KCNK18 0.959 - - 0.959 - - - Mlig455_023117 {REF} {Length: 1703} {Pfam: Ion channel [PF07885.18, score=119.1]} {Human: ENSG00000186795, KCNK18, potassium two pore domain channel subfamily K member 18, [Score=101, Expect=6e-23]; ENSG00000100433, KCNK10, potassium two pore domain channel subfamily K member 10, [Score=96.3, Expect=1e-20]} {Mouse: ENSMUSG00000040901, Kcnk18, potassium channel, subfamily K, member 18, [Score=103, Expect=7e-24]} {Dmel: FBgn0085425, CG34396, [Score=155, Expect=3e-40]} {Celegans: WBGene00010784, twk-48, TWiK family of potassium channels, [Score=155, Expect=1e-42]} {Smed: dd_Smed_v6_17586_0_1, dd_Smed_v6_17586_0_1, [Score=338, Expect=1e-112]} {RNA1310_118169}
18. MligTC455_24089 12 0.25 Mlig455_018092

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_018092 {REF} {Length: 2904} {RNA1509_43825} {RNA1310_93759} {RNA815_63754}
19. MligTC455_37917 34 0.71 Mlig455_070471

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_070471 {REF} {Length: 638} {NoTransDecoderORF} {RNA1310_105024}
20. MligTC455_49929 76 1.59 Mlig455_001249, Mlig455_001253

Neo: -

Age: Down-Up-Up

 0.959 - - 0.959 - - -

Mlig455_001249 {REF} {Length: 984} {RNA1310_33799.1} {RNA815_47109}

Mlig455_001253 {REF} {Length: 1260} {RNA1310_33799.1} {RNA815_45980}
21. MligTC455_14735 296 6.16 Mlig455_039449

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_039449 {REF} {Length: 354} {NoTransDecoderORF} {RNA1310_106071} {RNA815_53172}
22. MligTC455_35736 11 0.23 Mlig455_062915

Neo: -

Age: -

 0.958 - - - - - 0.958 Mlig455_062915 {REF} {Length: 510} {NoTransDecoderORF} {RNA1310_135035}
23. MligTC455_49469 65 1.35 Mlig455_016236

Neo: -

Age: -

Region-enriched R3: 5.774/0.00000

 B3GNT5 0.958 - - 0.958 - - - Mlig455_016236 {REF} {Length: 2696} {Pfam: Galactosyltransferase [PF01762.23, score=91.0]} {Human: ENSG00000176597, B3GNT5, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5, [Score=100, Expect=1e-22]} {Mouse: ENSMUSG00000034780, B3galt1, UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1, [Score=86.3, Expect=3e-18]; ENSMUSG00000043300, B3galnt1, UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1, [Score=83.2, Expect=4e-17]} {Dmel: FBgn0000221, brn, brainiac, [Score=77.0, Expect=3e-15]} {Celegans: WBGene00044630, bus-17, Hexosyltransferase, [RH, Score=65.5, Expect=2e-11]} {Smed: dd_Smed_v6_13702_0_1, dd_Smed_v6_13702_0_1, [RH, Score=171, Expect=5e-49]} {RNA1509_54587, RNA1509_56943} {RNA1310_18654, RNA1509_54587, RNA1509_56943} {RNA1509_54587, RNA1509_56943, RNA815_8083}
24. MligTC455_03579 53 1.11 Mlig455_022179

Neo: -

Age: -

Region-enriched R6: 6.609/0.00361

 0.957 - - - - - 0.957 Mlig455_022179 {REF} {Length: 568} {RNA1509_23989} {RNA1310_1198.1} {RNA815_345.1}
25. MligTC455_14145 21 0.44 Mlig455_019525

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_019525 {REF} {Length: 589} {RNA1310_32376.1} {RNA815_45036}
26. MligTC455_16857 32 0.66 Mlig455_003087

Neo: -

Age: -

Region-enriched R6: 6.960/0.04695

 0.957 - - - - - 0.957 Mlig455_003087 {REF} {Length: 2468} {RNA1509_54585} {RNA1310_42392} {RNA815_12871}
27. MligTC455_05559 14 0.3 Mlig455_029787

Neo: -

Age: -

 0.956 - - - - - 0.956 Mlig455_029787 {REF} {Length: 663} {NoTransDecoderORF} {RNA1310_33708} {RNA815_18649}
28. MligTC455_12878 91 1.89 Mlig455_025598, Mlig455_052895

Neo: -

Age: -

 0.956 - - 0.956 - - -

Mlig455_025598 {REF} {Length: 345} {NoTransDecoderORF} {RNA1310_75777}

Mlig455_052895 {REF} {Length: 467} {NoTransDecoderORF} {RNA1310_75777}
29. MligTC455_38839 18 0.37 Mlig455_067019

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_067019 {REF} {Length: 1403} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=59.4]; Capsular polysaccharide synthesis protein [PF05704.14, score=18.6]} {Smed: dd_Smed_v6_42389_0_1, dd_Smed_v6_42389_0_1, [RH, Score=141, Expect=1e-38]} {RNA1310_19511} {RNA815_7578}
30. MligTC455_41673 26 0.54 Mlig455_035834

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_035834 {REF} {Length: 1561} {NoTransDecoderORF} {RNA1310_64046} {RNA815_37581}
31. MligTC455_01232 74 1.55 Mlig455_016220

Neo: -

Age: -

Region-enriched R6: 7.177/0.02790

 0.955 - - - - - 0.955 Mlig455_016220 {REF} {Length: 1235} {RNA1509_51755, RNA1509_9784} {RNA1310_25050.2, RNA1509_9784} {RNA1509_9784, RNA815_12951}
32. MligTC455_01233 64 1.33 Mlig455_054264

Neo: -

Age: -

Region-enriched R6: 7.099/0.03616

 0.955 - - - - - 0.955 Mlig455_054264 {REF} {Length: 486} {RNA1509_51755} {RNA1310_25050.1} {RNA815_12951}
33. MligTC455_43193 359 7.49 Mlig455_033211

Neo: -

Age: -

 0.955 - - 0.955 - - - Mlig455_033211 {REF} {Length: 280} {NoTransDecoderORF} {RNA1310_121983}
34. MligTC455_32422 37 0.78 Mlig455_031348

Neo: -

Age: -

 CHRNA6 0.954 - - 0.954 - - - Mlig455_031348 {REF} {Length: 1659} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=69.7]} {Human: ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=61.6, Expect=5e-10]; ENSG00000160716, CHRNB2, cholinergic receptor nicotinic beta 2 subunit, [Score=61.2, Expect=8e-10]} {Mouse: ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=61.2, Expect=5e-10]; ENSMUSG00000027950, Chrnb2, cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal), [Score=60.8, Expect=8e-10]; ENSMUSG00000055026, Gabrg3, gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3, [Score=58.5, Expect=4e-09]} {Dmel: FBgn0000038, nAChRbeta1, nicotinic Acetylcholine Receptor beta1, [Score=48.5, Expect=4e-06]} {Celegans: WBGene00000057, acr-18, AcetylCholine Receptor; Acetylcholine receptor, one of nine alpha a7-like nicotinic acetylcholine receptor subunits (58.6 kD) (Acr-18), [Score=63.5, Expect=5e-11]} {Smed: dd_Smed_v6_30253_0_1, dd_Smed_v6_30253_0_1, [Score=59.3, Expect=6e-10]} {RNA1310_61084} {RNA815_48984}
35. MligTC455_43686 326 6.79 Mlig455_022166, Mlig455_055777

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.570

Region-enriched R3: 6.671/0.00000
Region-enriched R2: 5.224/0.01307

 0.954 - - 0.954 - - -

Mlig455_022166 {REF} {Length: 612} {RNA1310_23536} {RNA815_45816}

Mlig455_055777 {REF} {Length: 584} {RNA1310_23536} {RNA815_45816}
36. MligTC455_48321 205 4.28 Mlig455_008933

Neo: -

Age: -

Region-enriched R3: 4.378/0.00001

 TOB1 0.954 - - 0.954 - - - Mlig455_008933 {REF} {Length: 777} {Pfam: BTG family [PF07742.14, score=60.8]} {Human: ENSG00000141232, TOB1, transducer of ERBB2, 1, [Score=62.8, Expect=2e-11]} {Mouse: ENSMUSG00000037573, Tob1, transducer of ErbB-2.1, [Score=61.2, Expect=3e-11]} {Dmel: FBgn0028397, Tob, [Score=65.5, Expect=8e-13]} {Smed: dd_Smed_v6_7444_0_1, dd_Smed_v6_7444_0_1, [Score=73.9, Expect=3e-16]} {RNA1509_59615} {RNA1310_49803}
37. MligTC455_27131 3362 70.04 Mlig455_010170

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.893

Region-enriched R3: 6.424/0.00000
Region-enriched R2: 5.578/0.00015

 0.952 - - 0.952 - - - Mlig455_010170 {REF} {Length: 578} {RNA1509_3816} {RNA1310_105811} {RNA815_7257.6}
38. MligTC455_07706 27 0.57 Mlig455_001501, Mlig455_001519

Neo: -

Age: -

 DCX 0.951 - - - - - 0.951

Mlig455_001501 {REF} {Length: 1767} {Pfam: Doublecortin [PF03607.19, score=129.0]} {Human: ENSG00000077279, DCX, doublecortin, [RH, Score=194, Expect=3e-58]} {Mouse: ENSMUSG00000031285, Dcx, doublecortin, [RH, Score=196, Expect=5e-59]} {Dmel: FBgn0261387, CG17528, [Score=160, Expect=3e-43]} {Celegans: WBGene00006993, zyg-8, Serine/threonine-protein kinase zyg-8, [Score=159, Expect=3e-43]} {Smed: dd_Smed_v6_13093_0_1, dd_Smed_v6_13093_0_1, [Score=94.0, Expect=7e-21]}

Mlig455_001519 {REF} {Length: 1525} {Pfam: Doublecortin [PF03607.19, score=127.4]} {Human: ENSG00000077279, DCX, doublecortin, [Score=168, Expect=4e-49]} {Mouse: ENSMUSG00000031285, Dcx, doublecortin, [Score=169, Expect=7e-50]} {Dmel: FBgn0261387, CG17528, [Score=127, Expect=1e-32]} {Celegans: WBGene00006993, zyg-8, Serine/threonine-protein kinase zyg-8, [Score=134, Expect=3e-35]} {Smed: dd_Smed_v6_10315_0_2, dd_Smed_v6_10315_0_2, [Score=49.3, Expect=1e-06]}
39. MligTC455_19796 59 1.22 Mlig455_022720

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=1.691

Region-enriched R4: 4.274/0.04456

 0.951 - - 0.951 - - - Mlig455_022720 {REF} {Length: 1270} {RNA1310_22076} {RNA815_30973}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA