Data search


search
Exact
Search

Results for MligTC455_27287

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27287 2246 46.80 Mlig455_017309, Mlig455_017320, Mlig455_054850

Neo: -

Age: Up-Down-Down

Regeneration-upregulated BL: 2.562

Regeneration-enriched BL: 2.562

CHD6, CHD7

Mlig455_017309 {REF} {Length: 12411} {Pfam: SNF2-related domain [PF00176.25, score=228.4]; Helicase conserved C-terminal domain [PF00271.33, score=67.9]; Type III restriction enzyme, res subunit [PF04851.17, score=34.0]; BRK domain [PF07533.18, score=26.7]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=25.7]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=19.3]} {Human: ENSG00000171316, CHD7, chromodomain helicase DNA binding protein 7, [RH, Score=1174, Expect=0.0]; ENSG00000124177, CHD6, chromodomain helicase DNA binding protein 6, [RH, Score=1165, Expect=0.0]; ENSG00000177200, CHD9, chromodomain helicase DNA binding protein 9, [RH, Score=1161, Expect=0.0]; ENSG00000100888, CHD8, chromodomain helicase DNA binding protein 8, [RH, Score=1158, Expect=0.0]} {Mouse: ENSMUSG00000041235, Chd7, chromodomain helicase DNA binding protein 7, [RH, Score=1182, Expect=0.0]; ENSMUSG00000056608, Chd9, chromodomain helicase DNA binding protein 9, [RH, Score=1163, Expect=0.0]; ENSMUSG00000053754, Chd8, chromodomain helicase DNA binding protein 8, [RH, Score=1162, Expect=0.0]; ENSMUSG00000057133, Chd6, chromodomain helicase DNA binding protein 6, [RH, Score=1157, Expect=0.0]} {Dmel: FBgn0266557, kis, kismet, [RH, Score=1099, Expect=0.0]} {Celegans: WBGene00007053, chd-7, Chromodomain and Helicase Domain protein, [RH, Score=988, Expect=0.0]} {Smed: dd_Smed_v6_12815_0_1, dd_Smed_v6_12815_0_1, [Score=612, Expect=0.0]} {RNA1509_32496} {RNA1310_61.1} {RNA815_2864.1}

Mlig455_017320 {REF} {Length: 12689} {Pfam: SNF2-related domain [PF00176.25, score=228.0]; Helicase conserved C-terminal domain [PF00271.33, score=67.6]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=63.2]; Type III restriction enzyme, res subunit [PF04851.17, score=33.4]; BRK domain [PF07533.18, score=26.5]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=19.0]} {Human: ENSG00000124177, CHD6, chromodomain helicase DNA binding protein 6, [Score=1219, Expect=0.0]; ENSG00000100888, CHD8, chromodomain helicase DNA binding protein 8, [Score=1209, Expect=0.0]; ENSG00000171316, CHD7, chromodomain helicase DNA binding protein 7, [Score=1209, Expect=0.0]} {Mouse: ENSMUSG00000041235, Chd7, chromodomain helicase DNA binding protein 7, [Score=1220, Expect=0.0]; ENSMUSG00000057133, Chd6, chromodomain helicase DNA binding protein 6, [Score=1212, Expect=0.0]; ENSMUSG00000056608, Chd9, chromodomain helicase DNA binding protein 9, [Score=1208, Expect=0.0]; ENSMUSG00000053754, Chd8, chromodomain helicase DNA binding protein 8, [Score=1183, Expect=0.0]} {Dmel: FBgn0266557, kis, kismet, [RH, Score=1108, Expect=0.0]} {Celegans: WBGene00007053, chd-7, Chromodomain and Helicase Domain protein, [Score=1045, Expect=0.0]} {Smed: dd_Smed_v6_12815_0_1, dd_Smed_v6_12815_0_1, [RH, Score=664, Expect=0.0]} {RNA1509_26378} {RNA1310_61.1, RNA1509_26378} {RNA1509_26378, RNA815_2864.1}

Mlig455_054850 {REF} {Length: 13730} {TRANSSPLICED} {Pfam: SNF2-related domain [PF00176.25, score=228.0]; Helicase conserved C-terminal domain [PF00271.33, score=67.6]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=63.8]; Type III restriction enzyme, res subunit [PF04851.17, score=33.6]; BRK domain [PF07533.18, score=26.5]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=19.0]} {Human: ENSG00000124177, CHD6, chromodomain helicase DNA binding protein 6, [Score=1221, Expect=0.0]; ENSG00000171316, CHD7, chromodomain helicase DNA binding protein 7, [Score=1213, Expect=0.0]; ENSG00000100888, CHD8, chromodomain helicase DNA binding protein 8, [Score=1209, Expect=0.0]} {Mouse: ENSMUSG00000041235, Chd7, chromodomain helicase DNA binding protein 7, [Score=1223, Expect=0.0]; ENSMUSG00000056608, Chd9, chromodomain helicase DNA binding protein 9, [Score=1212, Expect=0.0]; ENSMUSG00000057133, Chd6, chromodomain helicase DNA binding protein 6, [Score=1211, Expect=0.0]; ENSMUSG00000053754, Chd8, chromodomain helicase DNA binding protein 8, [Score=1184, Expect=0.0]} {Dmel: FBgn0266557, kis, kismet, [RH, Score=1113, Expect=0.0]} {Celegans: WBGene00007053, chd-7, Chromodomain and Helicase Domain protein, [Score=1045, Expect=0.0]} {Smed: dd_Smed_v6_12815_0_1, dd_Smed_v6_12815_0_1, [RH, Score=666, Expect=0.0]} {RNA1509_32496, RNA1509_47168, RNA1509_60046} {RNA1310_61.1, RNA1509_47168, RNA1509_60046} {RNA1509_47168, RNA1509_60046, RNA815_2864.1}

Cumulative graph for MligTC455_27287

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.968 5.658 0.03963 0.48488
RegionR2 1.613 5.658 0.00671 0.07793
RegionR3 0.086 5.658 0.86910 1.00000
RegionR4 -0.401 5.658 0.51175 0.83795
RegionR5 0.427 5.658 0.37527 0.72843
RegionR6 0.941 5.658 0.05763 0.45022
RegionR7 0.181 5.658 0.75844 1.00000
RegionR8 0.12 5.658 0.85820 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.921 5.658 0.01269 0.48006
RegenerationR2 1.182 5.658 0.03687 0.31756
RegenerationR3 2.192 5.658 0.00039 0.02748
RegenerationR4 1.556 5.658 0.01337 0.17976
RegenerationR5 1.015 5.658 0.08512 0.44989
RegenerationR6 1.525 5.658 0.01106 0.12985
RegenerationBL 2.562 5.658 0.00000 0.00013 Specific for BL: 2.562
RegenerationTP 0.394 5.658 0.54348 0.92875


Genes with expression patterns similar to MligTC455_27287

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27287 2246 46.8 Mlig455_017309, Mlig455_017320, Mlig455_054850

Neo: -

Age: Up-Down-Down

Regeneration-upregulated BL: 2.562

Regeneration-enriched BL: 2.562

CHD6, CHD7 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_017309 {REF} {Length: 12411} {Pfam: SNF2-related domain [PF00176.25, score=228.4]; Helicase conserved C-terminal domain [PF00271.33, score=67.9]; Type III restriction enzyme, res subunit [PF04851.17, score=34.0]; BRK domain [PF07533.18, score=26.7]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=25.7]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=19.3]} {Human: ENSG00000171316, CHD7, chromodomain helicase DNA binding protein 7, [RH, Score=1174, Expect=0.0]; ENSG00000124177, CHD6, chromodomain helicase DNA binding protein 6, [RH, Score=1165, Expect=0.0]; ENSG00000177200, CHD9, chromodomain helicase DNA binding protein 9, [RH, Score=1161, Expect=0.0]; ENSG00000100888, CHD8, chromodomain helicase DNA binding protein 8, [RH, Score=1158, Expect=0.0]} {Mouse: ENSMUSG00000041235, Chd7, chromodomain helicase DNA binding protein 7, [RH, Score=1182, Expect=0.0]; ENSMUSG00000056608, Chd9, chromodomain helicase DNA binding protein 9, [RH, Score=1163, Expect=0.0]; ENSMUSG00000053754, Chd8, chromodomain helicase DNA binding protein 8, [RH, Score=1162, Expect=0.0]; ENSMUSG00000057133, Chd6, chromodomain helicase DNA binding protein 6, [RH, Score=1157, Expect=0.0]} {Dmel: FBgn0266557, kis, kismet, [RH, Score=1099, Expect=0.0]} {Celegans: WBGene00007053, chd-7, Chromodomain and Helicase Domain protein, [RH, Score=988, Expect=0.0]} {Smed: dd_Smed_v6_12815_0_1, dd_Smed_v6_12815_0_1, [Score=612, Expect=0.0]} {RNA1509_32496} {RNA1310_61.1} {RNA815_2864.1}

Mlig455_017320 {REF} {Length: 12689} {Pfam: SNF2-related domain [PF00176.25, score=228.0]; Helicase conserved C-terminal domain [PF00271.33, score=67.6]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=63.2]; Type III restriction enzyme, res subunit [PF04851.17, score=33.4]; BRK domain [PF07533.18, score=26.5]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=19.0]} {Human: ENSG00000124177, CHD6, chromodomain helicase DNA binding protein 6, [Score=1219, Expect=0.0]; ENSG00000100888, CHD8, chromodomain helicase DNA binding protein 8, [Score=1209, Expect=0.0]; ENSG00000171316, CHD7, chromodomain helicase DNA binding protein 7, [Score=1209, Expect=0.0]} {Mouse: ENSMUSG00000041235, Chd7, chromodomain helicase DNA binding protein 7, [Score=1220, Expect=0.0]; ENSMUSG00000057133, Chd6, chromodomain helicase DNA binding protein 6, [Score=1212, Expect=0.0]; ENSMUSG00000056608, Chd9, chromodomain helicase DNA binding protein 9, [Score=1208, Expect=0.0]; ENSMUSG00000053754, Chd8, chromodomain helicase DNA binding protein 8, [Score=1183, Expect=0.0]} {Dmel: FBgn0266557, kis, kismet, [RH, Score=1108, Expect=0.0]} {Celegans: WBGene00007053, chd-7, Chromodomain and Helicase Domain protein, [Score=1045, Expect=0.0]} {Smed: dd_Smed_v6_12815_0_1, dd_Smed_v6_12815_0_1, [RH, Score=664, Expect=0.0]} {RNA1509_26378} {RNA1310_61.1, RNA1509_26378} {RNA1509_26378, RNA815_2864.1}

Mlig455_054850 {REF} {Length: 13730} {TRANSSPLICED} {Pfam: SNF2-related domain [PF00176.25, score=228.0]; Helicase conserved C-terminal domain [PF00271.33, score=67.6]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=63.8]; Type III restriction enzyme, res subunit [PF04851.17, score=33.6]; BRK domain [PF07533.18, score=26.5]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=19.0]} {Human: ENSG00000124177, CHD6, chromodomain helicase DNA binding protein 6, [Score=1221, Expect=0.0]; ENSG00000171316, CHD7, chromodomain helicase DNA binding protein 7, [Score=1213, Expect=0.0]; ENSG00000100888, CHD8, chromodomain helicase DNA binding protein 8, [Score=1209, Expect=0.0]} {Mouse: ENSMUSG00000041235, Chd7, chromodomain helicase DNA binding protein 7, [Score=1223, Expect=0.0]; ENSMUSG00000056608, Chd9, chromodomain helicase DNA binding protein 9, [Score=1212, Expect=0.0]; ENSMUSG00000057133, Chd6, chromodomain helicase DNA binding protein 6, [Score=1211, Expect=0.0]; ENSMUSG00000053754, Chd8, chromodomain helicase DNA binding protein 8, [Score=1184, Expect=0.0]} {Dmel: FBgn0266557, kis, kismet, [RH, Score=1113, Expect=0.0]} {Celegans: WBGene00007053, chd-7, Chromodomain and Helicase Domain protein, [Score=1045, Expect=0.0]} {Smed: dd_Smed_v6_12815_0_1, dd_Smed_v6_12815_0_1, [RH, Score=666, Expect=0.0]} {RNA1509_32496, RNA1509_47168, RNA1509_60046} {RNA1310_61.1, RNA1509_47168, RNA1509_60046} {RNA1509_47168, RNA1509_60046, RNA815_2864.1}
2. MligTC455_28504 4638 96.63 Mlig455_038955, Mlig455_052899, Mlig455_056700, Mlig455_057213

Neo: -

Age: -

Region-enriched R4: 1.485/0.01197

1.847 - - 0.868 - 0.979 -

Mlig455_038955 {REF} {Length: 911} {RNA1509_3920} {RNA1310_3533.1} {RNA815_20143}

Mlig455_052899 {REF} {Length: 912} {RNA1509_3920} {RNA1310_3533.1} {RNA815_20143}

Mlig455_056700 {REF} {Length: 912} {RNA1509_3920} {RNA1310_3533.1} {RNA815_20143}

Mlig455_057213 {REF} {Length: 3575} {TRANSSPLICED} {Pfam: Kyakuja-Dileera-Zisupton transposase [PF18758.3, score=114.4]} {RNA1509_37787} {RNA1310_3533.1} {RNA815_20143}
3. MligTC455_15917 320 6.67 Mlig455_033769

Neo: -

Age: -

ZNF609 1.789 - - 0.807 - 0.982 - Mlig455_033769 {REF} {Length: 2612} {Human: ENSG00000180357, ZNF609, zinc finger protein 609, [Score=97.4, Expect=3e-20]; ENSG00000168916, ZNF608, zinc finger protein 608, [Score=96.3, Expect=7e-20]} {Mouse: ENSMUSG00000040524, Zfp609, zinc finger protein 609, [Score=97.4, Expect=2e-20]; ENSMUSG00000052713, Zfp608, zinc finger protein 608, [Score=96.3, Expect=5e-20]} {Dmel: FBgn0285917, sbb, scribbler, [Score=99.0, Expect=5e-21]} {Smed: dd_Smed_v6_9549_0_1, dd_Smed_v6_9549_0_1, [Score=97.4, Expect=8e-22]} {RNA1509_28088, RNA1509_52326} {RNA1310_38557, RNA1509_28088, RNA1509_52326} {RNA1509_28088, RNA1509_52326, RNA815_31477}
4. MligTC455_15918 318 6.62 Mlig455_033796

Neo: -

Age: -

1.788 - - 0.807 - 0.981 - Mlig455_033796 {REF} {Length: 787} {NoTransDecoderORF} {RNA1509_28088} {RNA1310_104530} {RNA815_63713}
5. MligTC455_25762 513 10.68 Mlig455_016742

Neo: -

Age: -

LAMB1 1.783 - - - 0.825 0.958 - Mlig455_016742 {REF} {Length: 6107} {Pfam: Laminin EGF domain [PF00053.26, score=205.7]; Tropomyosin like [PF12718.9, score=19.1]} {Human: ENSG00000091136, LAMB1, laminin subunit beta 1, [Score=428, Expect=3e-125]; ENSG00000172037, LAMB2, laminin subunit beta 2, [Score=423, Expect=2e-123]} {Mouse: ENSMUSG00000002900, Lamb1, laminin B1, [Score=422, Expect=4e-123]; ENSMUSG00000052911, Lamb2, laminin, beta 2, [Score=422, Expect=4e-123]} {Dmel: FBgn0261800, LanB1, [Score=392, Expect=5e-113]} {Celegans: WBGene00002247, lam-1, LAMinin related. See also lmb, [Score=414, Expect=1e-120]} {Smed: dd_Smed_v6_6093_0_1, dd_Smed_v6_6093_0_1, [Score=374, Expect=2e-107]} {RNA1509_4983} {RNA1310_676.1, RNA1509_4983} {RNA1509_4983, RNA815_206}
6. MligTC455_08966 67 1.4 Mlig455_050187

Neo: -

Age: -

1.78 - - - - 0.820 0.960 Mlig455_050187 {REF} {Length: 682} {NoTransDecoderORF} {RNA1310_138902}
7. MligTC455_48267 778 16.21 Mlig455_047346

Neo: -

Age: Up-Down-Up

LENG8 1.765 - - - - 0.810 0.955 Mlig455_047346 {REF} {Length: 3202} {Pfam: SAC3/GANP family [PF03399.18, score=76.1]} {Human: ENSG00000276458, LENG8, leukocyte receptor cluster member 8, [RH, Score=286, Expect=6e-86]; ENSG00000167615, LENG8, leukocyte receptor cluster member 8, [RH, Score=286, Expect=6e-86]; ENSG00000276681, LENG8, leukocyte receptor cluster member 8, [RH, Score=286, Expect=6e-86]; ENSG00000274305, LENG8, leukocyte receptor cluster member 8, [RH, Score=286, Expect=6e-86]} {Mouse: ENSMUSG00000035545, Leng8, leukocyte receptor cluster (LRC) member 8, [RH, Score=260, Expect=9e-77]} {Dmel: FBgn0032305, CG6700, [RH, Score=253, Expect=1e-73]} {Celegans: WBGene00017158, hpo-10, [RH, Score=192, Expect=5e-53]} {Smed: dd_Smed_v6_2926_0_3, dd_Smed_v6_2926_0_3, [RH, Score=278, Expect=2e-83]} {RNA1509_6802} {RNA1310_1963.1} {RNA815_2189.1}
8. MligTC455_28214 50 1.04 Mlig455_059063

Neo: -

Age: -

1.715 - - - - 0.763 0.952 Mlig455_059063 {REF} {Length: 2861} {Pfam: African swine fever virus J13L protein [PF05568.13, score=54.8]} {RNA1509_245} {RNA1310_71097} {RNA815_18938.2}
9. MligTC455_49954 789 16.44 Mlig455_032086

Neo: -

Age: -

ARHGAP17 1.706 - - - 0.957 0.749 - Mlig455_032086 {REF} {Length: 4485} {Pfam: RhoGAP domain [PF00620.29, score=106.9]} {Human: ENSG00000140750, ARHGAP17, Rho GTPase activating protein 17, [RH, Score=153, Expect=2e-37]; ENSG00000006740, ARHGAP44, Rho GTPase activating protein 44, [RH, Score=152, Expect=2e-37]} {Mouse: ENSMUSG00000033389, Arhgap44, Rho GTPase activating protein 44, [RH, Score=156, Expect=6e-39]} {Dmel: FBgn0038747, RhoGAP92B, Rho GTPase activating protein at 92B, [Score=94.4, Expect=2e-19]} {Celegans: WBGene00020209, T04C9.1, [Score=65.5, Expect=1e-10]} {Smed: dd_Smed_v6_10426_0_1, dd_Smed_v6_10426_0_1, [RH, Score=152, Expect=7e-38]} {RNA1509_8985} {RNA1310_5441} {RNA815_6114}
10. MligTC455_43795 837 17.43 Mlig455_017342

Neo: -

Age: logFC(26M/2M)=-0.242

1.693 - - - 0.732 - 0.961 Mlig455_017342 {REF} {Length: 4372} {RNA1509_16184} {RNA1310_21121} {RNA815_4280.1}
11. MligTC455_42145 622 12.95 Mlig455_001052

Neo: -

Age: Up-Down-Down

SRRM5 1.691 - - 0.731 - - 0.960 Mlig455_001052 {REF} {Length: 5171} {Human: ENSG00000226763, SRRM5, serine/arginine repetitive matrix 5, [Score=53.9, Expect=2e-06]} {Dmel: FBgn0035617, l(3)psg2, lethal (3) persistent salivary gland 2, [Score=79.3, Expect=2e-14]} {Celegans: WBGene00019871, R04E5.8, [Score=52.0, Expect=3e-06]} {RNA1509_30682} {RNA1310_18549.2} {RNA815_15754}
12. MligTC455_51516 1758 36.63 Mlig455_013231, Mlig455_013304

Neo: -

Age: -

DAB2IP 1.662 - - - - 0.956 0.706

Mlig455_013231 {REF} {Length: 4993} {Pfam: C2 domain [PF00168.32, score=38.7]} {Human: ENSG00000136848, DAB2IP, DAB2 interacting protein, [Score=130, Expect=1e-31]} {Mouse: ENSMUSG00000026883, Dab2ip, disabled 2 interacting protein, [Score=133, Expect=8e-33]} {Dmel: FBgn0261570, CG42684, [Score=145, Expect=5e-37]} {Celegans: WBGene00001516, gap-2, Ras GTPase-activating protein gap-2, [Score=113, Expect=2e-26]} {Smed: dd_Smed_v6_3238_0_1, dd_Smed_v6_3238_0_1, [Score=107, Expect=1e-24]} {RNA1509_45404} {RNA1310_15354.1} {RNA815_3372}

Mlig455_013304 {REF} {Length: 3952} {Pfam: GTPase-activator protein for Ras-like GTPase [PF00616.21, score=77.2]; C2 domain [PF00168.32, score=37.3]} {Human: ENSG00000136848, DAB2IP, DAB2 interacting protein, [Score=352, Expect=4e-104]} {Mouse: ENSMUSG00000026883, Dab2ip, disabled 2 interacting protein, [Score=350, Expect=2e-104]} {Dmel: FBgn0261570, CG42684, [Score=344, Expect=6e-100]} {Celegans: WBGene00001516, gap-2, Ras GTPase-activating protein gap-2, [Score=332, Expect=4e-98]} {Smed: dd_Smed_v6_3238_0_1, dd_Smed_v6_3238_0_1, [RH, Score=284, Expect=3e-80]} {RNA1509_45404} {RNA1310_15354.1} {RNA815_3372}
13. MligTC455_39060 962 20.05 Mlig455_034536, Mlig455_070441

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.435

Region-enriched R5: 1.668/0.00004
Region-enriched R2: 1.408/0.04353

0.958 - - - - 0.958 -

Mlig455_034536 {REF} {Length: 2890} {Smed: dd_Smed_v6_10049_0_1, dd_Smed_v6_10049_0_1, [RH, Score=130, Expect=3e-32]} {RNA1509_7991} {RNA1310_1271.1} {RNA815_16754}

Mlig455_070441 {REF} {Length: 2941} {Smed: dd_Smed_v6_10049_0_1, dd_Smed_v6_10049_0_1, [RH, Score=129, Expect=4e-32]} {RNA1509_7991} {RNA1310_1271.1, RNA1509_7991} {RNA1509_7991, RNA815_16754}
14. MligTC455_39375 773 16.1 Mlig455_052642, Mlig455_065712

Neo: -

Age: -

0.952 - - - - 0.952 -

Mlig455_052642 {REF} {Length: 4107} {RNA1509_9151} {RNA1310_2304} {RNA815_15356}

Mlig455_065712 {REF} {Length: 4103} {RNA1509_39258, RNA1509_9151} {RNA1310_2304, RNA1509_39258} {RNA1509_39258, RNA815_15356}
15. MligTC455_44773 344 7.16 Mlig455_056369

Neo: Int S/G2/M

Age: Down-Up-Down

Region-enriched R5: 2.057/0.01861

0.951 - - - - - 0.951 Mlig455_056369 {REF} {Length: 2569} {TRANSSPLICED} {RNA1509_31340, RNA1509_40584} {RNA1310_41204, RNA1509_31340, RNA1509_40584} {RNA1509_31340, RNA1509_40584, RNA815_47747}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA