M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27610

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27610 370 7.71 Mlig455_022082, Mlig455_066623

Neo: -

Age: Down-Down-Up

Region-enriched R5: 1.161/0.03987

 HIST1H2BK

Mlig455_022082 {REF} {Length: 491} {NoTransDecoderORF} {RNA1310_39046} {RNA815_41302}

Mlig455_066623 {REF} {Length: 2228} {Pfam: Core histone H2A/H2B/H3/H4 [PF00125.26, score=83.5]; Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=29.7]; YscO-like protein [PF16789.7, score=19.2]} {Human: ENSG00000197903, HIST1H2BK, histone cluster 1 H2B family member k, [RH, Score=197, Expect=6e-66]; ENSG00000276410, HIST1H2BB, histone cluster 1 H2B family member b, [RH, Score=197, Expect=1e-65]; ENSG00000124635, HIST1H2BJ, histone cluster 1 H2B family member j, [RH, Score=197, Expect=4e-66]; ENSG00000274641, HIST1H2BO, histone cluster 1 H2B family member o, [RH, Score=196, Expect=1e-65]; ENSG00000158373, HIST1H2BD, histone cluster 1 H2B family member d, [RH, Score=196, Expect=2e-65]; ENSG00000233822, HIST1H2BN, histone cluster 1 H2B family member n, [RH, Score=196, Expect=2e-65]; ENSG00000277224, HIST1H2BF, histone cluster 1 H2B family member f, [RH, Score=196, Expect=2e-65]; ENSG00000274290, HIST1H2BE, histone cluster 1 H2B family member e, [RH, Score=196, Expect=2e-65]; ENSG00000184678, HIST2H2BE, histone cluster 2 H2B family member e, [RH, Score=196, Expect=1e-65]; ENSG00000275713, HIST1H2BH, histone cluster 1 H2B family member h, [RH, Score=196, Expect=2e-65]; ENSG00000273802, HIST1H2BG, histone cluster 1 H2B family member g, [RH, Score=196, Expect=2e-65]; ENSG00000278588, HIST1H2BI, histone cluster 1 H2B family member i, [RH, Score=196, Expect=2e-65]; ENSG00000180596, HIST1H2BC, histone cluster 1 H2B family member c, [RH, Score=196, Expect=2e-65]; ENSG00000273703, HIST1H2BM, histone cluster 1 H2B family member m, [RH, Score=195, Expect=5e-65]; ENSG00000234289, H2BFS, H2B histone family member S, [RH, Score=194, Expect=1e-64]; ENSG00000274559, H2BFS, H2B histone family member S, [RH, Score=194, Expect=1e-64]; ENSG00000203814, HIST2H2BF, histone cluster 2 H2B family member f, [RH, Score=194, Expect=1e-64]; ENSG00000185130, HIST1H2BL, histone cluster 1 H2B family member l, [RH, Score=192, Expect=5e-64]; ENSG00000146047, HIST1H2BA, histone cluster 1 H2B family member a, [RH, Score=190, Expect=5e-63]} {Mouse: ENSMUSG00000058385, Hist1h2bg, histone cluster 1, H2bg, [RH, Score=196, Expect=1e-65]; ENSMUSG00000114279, Hist1h2bm, histone cluster 1, H2bm, [RH, Score=196, Expect=1e-65]; ENSMUSG00000047246, Hist1h2be, histone cluster 1, H2be, [RH, Score=196, Expect=1e-65]; ENSMUSG00000018102, Hist1h2bc, histone cluster 1, H2bc, [RH, Score=196, Expect=1e-65]; ENSMUSG00000114456, Hist1h2bh, histone cluster 1, H2bh, [RH, Score=196, Expect=1e-65]; ENSMUSG00000062727, Hist1h2bk, histone cluster 1, H2bk, [RH, Score=194, Expect=6e-65]; ENSMUSG00000105827, Hist2h2bb, histone cluster 2, H2bb, [RH, Score=194, Expect=8e-65]; ENSMUSG00000075031, Hist1h2bb, histone cluster 1, H2bb, [RH, Score=194, Expect=8e-65]; ENSMUSG00000095217, Hist1h2bn, histone cluster 1, H2bn, [RH, Score=193, Expect=2e-64]; ENSMUSG00000069268, Hist1h2bf, histone cluster 1, H2bf, [RH, Score=193, Expect=2e-64]; ENSMUSG00000069303, Hist1h2br, histone cluster 1 H2br, [RH, Score=193, Expect=2e-64]; ENSMUSG00000069300, Hist1h2bj, histone cluster 1, H2bj, [RH, Score=193, Expect=2e-64]; ENSMUSG00000094338, Hist1h2bl, histone cluster 1, H2bl, [RH, Score=193, Expect=2e-64]; ENSMUSG00000069307, Hist1h2bq, histone cluster 1, H2bq, [RH, Score=193, Expect=2e-64]; ENSMUSG00000068854, Hist2h2be, histone cluster 2, H2be, [RH, Score=192, Expect=3e-64]; ENSMUSG00000069308, Hist1h2bp, histone cluster 1, H2bp, [RH, Score=192, Expect=5e-64]; ENSMUSG00000050799, Hist1h2ba, histone cluster 1, H2ba, [RH, Score=189, Expect=4e-63]} {Dmel: FBgn0061209, His2B:CG17949, [RH, Score=178, Expect=1e-58]} {Celegans: WBGene00001915, his-41, Probable histone H2B 3, [RH, Score=188, Expect=1e-62]} {Smed: dd_Smed_v6_879_0_1, dd_Smed_v6_879_0_1, [RH, Score=197, Expect=2e-66]} {RNA1509_28769} {RNA1310_21486.1, RNA1509_28769} {RNA1509_28769, RNA815_22759.2}

Cumulative graph for MligTC455_27610

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.121 3.506 0.32863 0.97543
RegionR2 -1.213 3.506 0.07169 0.32682
RegionR3 1.308 3.506 0.00389 0.08056
RegionR4 1.27 3.506 0.01834 0.09583
RegionR5 1.161 3.506 0.00601 0.03987
RegionR6 0.208 3.506 0.68202 1.00000
RegionR7 -1.467 3.506 0.07601 0.53178
RegionR8 -2.388 3.506 0.03628 0.37332

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.129 3.506 0.07353 0.76135
RegenerationR2 -0.099 3.506 0.87082 1.00000
RegenerationR3 -0.065 3.506 0.89993 1.00000
RegenerationR4 -0.403 3.506 0.45048 0.84214
RegenerationR5 -0.066 3.506 0.89120 1.00000
RegenerationR6 0.616 3.506 0.25708 0.60706
RegenerationBL -1.361 3.506 0.27908 0.63987
RegenerationTP 1.795 3.506 0.05473 0.38115


Genes with expression patterns similar to MligTC455_27610

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27610 370 7.71 Mlig455_022082, Mlig455_066623

Neo: -

Age: Down-Down-Up

Region-enriched R5: 1.161/0.03987

 HIST1H2BK 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_022082 {REF} {Length: 491} {NoTransDecoderORF} {RNA1310_39046} {RNA815_41302}

Mlig455_066623 {REF} {Length: 2228} {Pfam: Core histone H2A/H2B/H3/H4 [PF00125.26, score=83.5]; Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=29.7]; YscO-like protein [PF16789.7, score=19.2]} {Human: ENSG00000197903, HIST1H2BK, histone cluster 1 H2B family member k, [RH, Score=197, Expect=6e-66]; ENSG00000276410, HIST1H2BB, histone cluster 1 H2B family member b, [RH, Score=197, Expect=1e-65]; ENSG00000124635, HIST1H2BJ, histone cluster 1 H2B family member j, [RH, Score=197, Expect=4e-66]; ENSG00000274641, HIST1H2BO, histone cluster 1 H2B family member o, [RH, Score=196, Expect=1e-65]; ENSG00000158373, HIST1H2BD, histone cluster 1 H2B family member d, [RH, Score=196, Expect=2e-65]; ENSG00000233822, HIST1H2BN, histone cluster 1 H2B family member n, [RH, Score=196, Expect=2e-65]; ENSG00000277224, HIST1H2BF, histone cluster 1 H2B family member f, [RH, Score=196, Expect=2e-65]; ENSG00000274290, HIST1H2BE, histone cluster 1 H2B family member e, [RH, Score=196, Expect=2e-65]; ENSG00000184678, HIST2H2BE, histone cluster 2 H2B family member e, [RH, Score=196, Expect=1e-65]; ENSG00000275713, HIST1H2BH, histone cluster 1 H2B family member h, [RH, Score=196, Expect=2e-65]; ENSG00000273802, HIST1H2BG, histone cluster 1 H2B family member g, [RH, Score=196, Expect=2e-65]; ENSG00000278588, HIST1H2BI, histone cluster 1 H2B family member i, [RH, Score=196, Expect=2e-65]; ENSG00000180596, HIST1H2BC, histone cluster 1 H2B family member c, [RH, Score=196, Expect=2e-65]; ENSG00000273703, HIST1H2BM, histone cluster 1 H2B family member m, [RH, Score=195, Expect=5e-65]; ENSG00000234289, H2BFS, H2B histone family member S, [RH, Score=194, Expect=1e-64]; ENSG00000274559, H2BFS, H2B histone family member S, [RH, Score=194, Expect=1e-64]; ENSG00000203814, HIST2H2BF, histone cluster 2 H2B family member f, [RH, Score=194, Expect=1e-64]; ENSG00000185130, HIST1H2BL, histone cluster 1 H2B family member l, [RH, Score=192, Expect=5e-64]; ENSG00000146047, HIST1H2BA, histone cluster 1 H2B family member a, [RH, Score=190, Expect=5e-63]} {Mouse: ENSMUSG00000058385, Hist1h2bg, histone cluster 1, H2bg, [RH, Score=196, Expect=1e-65]; ENSMUSG00000114279, Hist1h2bm, histone cluster 1, H2bm, [RH, Score=196, Expect=1e-65]; ENSMUSG00000047246, Hist1h2be, histone cluster 1, H2be, [RH, Score=196, Expect=1e-65]; ENSMUSG00000018102, Hist1h2bc, histone cluster 1, H2bc, [RH, Score=196, Expect=1e-65]; ENSMUSG00000114456, Hist1h2bh, histone cluster 1, H2bh, [RH, Score=196, Expect=1e-65]; ENSMUSG00000062727, Hist1h2bk, histone cluster 1, H2bk, [RH, Score=194, Expect=6e-65]; ENSMUSG00000105827, Hist2h2bb, histone cluster 2, H2bb, [RH, Score=194, Expect=8e-65]; ENSMUSG00000075031, Hist1h2bb, histone cluster 1, H2bb, [RH, Score=194, Expect=8e-65]; ENSMUSG00000095217, Hist1h2bn, histone cluster 1, H2bn, [RH, Score=193, Expect=2e-64]; ENSMUSG00000069268, Hist1h2bf, histone cluster 1, H2bf, [RH, Score=193, Expect=2e-64]; ENSMUSG00000069303, Hist1h2br, histone cluster 1 H2br, [RH, Score=193, Expect=2e-64]; ENSMUSG00000069300, Hist1h2bj, histone cluster 1, H2bj, [RH, Score=193, Expect=2e-64]; ENSMUSG00000094338, Hist1h2bl, histone cluster 1, H2bl, [RH, Score=193, Expect=2e-64]; ENSMUSG00000069307, Hist1h2bq, histone cluster 1, H2bq, [RH, Score=193, Expect=2e-64]; ENSMUSG00000068854, Hist2h2be, histone cluster 2, H2be, [RH, Score=192, Expect=3e-64]; ENSMUSG00000069308, Hist1h2bp, histone cluster 1, H2bp, [RH, Score=192, Expect=5e-64]; ENSMUSG00000050799, Hist1h2ba, histone cluster 1, H2ba, [RH, Score=189, Expect=4e-63]} {Dmel: FBgn0061209, His2B:CG17949, [RH, Score=178, Expect=1e-58]} {Celegans: WBGene00001915, his-41, Probable histone H2B 3, [RH, Score=188, Expect=1e-62]} {Smed: dd_Smed_v6_879_0_1, dd_Smed_v6_879_0_1, [RH, Score=197, Expect=2e-66]} {RNA1509_28769} {RNA1310_21486.1, RNA1509_28769} {RNA1509_28769, RNA815_22759.2}
2. MligTC455_08244 42 0.88 Mlig455_022615

Neo: -

Age: Down-Up-Up

Region-enriched R4: 4.187/0.02837
Region-enriched R5: 3.530/0.03280

 VAV1 1.773 - - - 0.809 - 0.964 Mlig455_022615 {REF} {Length: 2307} {TRANSSPLICED} {Pfam: RhoGEF domain [PF00621.22, score=45.1]; SH2 domain [PF00017.26, score=37.9]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=30.6]; Calponin homology (CH) domain [PF00307.33, score=27.2]} {Human: ENSG00000141968, VAV1, vav guanine nucleotide exchange factor 1, [Score=73.9, Expect=4e-13]} {Mouse: ENSMUSG00000034116, Vav1, vav 1 oncogene, [Score=53.5, Expect=8e-07]; ENSMUSG00000009621, Vav2, vav 2 oncogene, [Score=52.4, Expect=2e-06]} {Smed: dd_Smed_v6_6109_0_1, dd_Smed_v6_6109_0_1, [Score=65.9, Expect=4e-11]} {RNA1509_11075} {RNA1310_9537.1} {RNA815_3290}
3. MligTC455_19459 537 11.19 Mlig455_007621

Neo: -

Age: Down-Up-Down

 1.712 - - - 0.950 - 0.762 Mlig455_007621 {REF} {Length: 2493} {RNA1509_22132, RNA1509_3144} {RNA1310_8535.1, RNA1509_22132} {RNA1509_22132, RNA815_3484.1}
4. MligTC455_46182 182 3.8 Mlig455_054367

Neo: -

Age: -

Region-enriched R4: 10.458/0.00000
Region-enriched R5: 4.434/0.00787

 0.975 - - - - - 0.975 Mlig455_054367 {REF} {Length: 1006} {Pfam: Universal stress protein family [PF00582.28, score=108.4]} {Smed: dd_Smed_v6_402_1_1, dd_Smed_v6_402_1_1, [Score=119, Expect=8e-35]} {RNA1509_5080} {RNA1310_45709} {RNA815_23470}
5. MligTC455_33182 66 1.37 Mlig455_051889

Neo: -

Age: -

 0.969 - - - - - 0.969 Mlig455_051889 {REF} {Length: 360} {NoTransDecoderORF} {RNA1509_39807} {RNA1310_34787.2} {RNA815_55147}
6. MligTC455_52674 464 9.67 Mlig455_031198

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.388

Region-enriched R4: 3.228/0.00580
Region-enriched R3: 2.915/0.00716
Region-enriched R5: 2.751/0.00286

 0.969 - - - - - 0.969 Mlig455_031198 {REF} {Length: 2200} {Pfam: PMG protein [PF05287.14, score=19.0]} {Celegans: WBGene00017794, mltn-13, MLt-TeN (Mlt-10) related, [Score=59.7, Expect=1e-09]} {RNA1509_11776} {RNA1310_18486} {RNA815_10019}
7. MligTC455_52632 96 2 Mlig455_005834

Neo: -

Age: Down-Up-Down

Region-enriched R4: 2.992/0.04195

 0.967 - - - - - 0.967 Mlig455_005834 {REF} {Length: 1504} {Pfam: Syntaxin 6, N-terminal [PF09177.13, score=47.2]} {RNA1509_51182} {RNA1310_21442.2} {RNA815_8498.1}
8. MligTC455_49199 55 1.15 Mlig455_039472

Neo: -

Age: -

 ZSWIM7 0.965 - - - - - 0.965 Mlig455_039472 {REF} {Length: 1238} {TRANSSPLICED} {Human: ENSG00000214941, ZSWIM7, zinc finger SWIM-type containing 7, [RH, Score=79.3, Expect=1e-18]} {Mouse: ENSMUSG00000014243, Zswim7, zinc finger SWIM-type containing 7, [RH, Score=74.7, Expect=6e-17]} {RNA1310_11948.1} {RNA815_29151}
9. MligTC455_33715 36 0.75 Mlig455_048624, Mlig455_048741

Neo: -

Age: -

 0.964 - - - - - 0.964

Mlig455_048624 {REF} {Length: 747} {NoTransDecoderORF} {RNA1509_54597} {RNA1310_113588} {RNA815_29533}

Mlig455_048741 {REF} {Length: 651} {RNA1310_113588} {RNA815_29533}
10. MligTC455_07965 20 0.41 Mlig455_022984

Neo: -

Age: -

 0.958 - - - - - 0.958 Mlig455_022984 {REF} {Length: 2834} {NoTransDecoderORF} {RNA1509_35506} {RNA1310_48890} {RNA815_24918}
11. MligTC455_13458 928 19.33 Mlig455_024267, Mlig455_024269

Neo: -

Age: -

Region-enriched R3: 2.154/0.00126

 0.958 - - - - - 0.958

Mlig455_024267 {REF} {Length: 4032} {TRANSSPLICED} {Dmel: FBgn0039113, CG10217, [RH, Score=308, Expect=2e-96]} {Smed: dd_Smed_v6_2624_0_1, dd_Smed_v6_2624_0_1, [RH, Score=566, Expect=0.0]} {RNA1509_53660} {RNA1310_12023.1} {RNA815_3958.1}

Mlig455_024269 {REF} {Length: 3882} {TRANSSPLICED} {Dmel: FBgn0039113, CG10217, [RH, Score=308, Expect=2e-96]} {Smed: dd_Smed_v6_2624_0_1, dd_Smed_v6_2624_0_1, [RH, Score=566, Expect=0.0]} {RNA1509_24344, RNA1509_29477, RNA1509_40857, RNA1509_53660, RNA1509_54476, RNA1509_9360} {RNA1310_12023.1, RNA1509_24344, RNA1509_29477, RNA1509_40857, RNA1509_53660, RNA1509_54476, RNA1509_9360} {RNA1509_24344, RNA1509_29477, RNA1509_40857, RNA1509_53660, RNA1509_54476, RNA1509_9360, RNA815_3958.1}
12. MligTC455_17336 156 3.24 Mlig455_000033

Neo: -

Age: logFC(26M/2M)=-0.295

 NTN1 0.956 - - - - - 0.956 Mlig455_000033 {REF} {Length: 4688} {Pfam: Laminin N-terminal (Domain VI) [PF00055.19, score=121.0]; Laminin EGF domain [PF00053.26, score=68.8]; UNC-6/NTR/C345C module [PF01759.23, score=41.9]} {Human: ENSG00000065320, NTN1, netrin 1, [RH, Score=337, Expect=1e-105]} {Mouse: ENSMUSG00000020902, Ntn1, netrin 1, [Score=333, Expect=9e-105]} {Dmel: FBgn0015773, NetA, Netrin-A, [RH, Score=289, Expect=1e-86]} {Celegans: WBGene00006746, unc-6, Netrin unc-6, [RH, Score=291, Expect=6e-89]} {Smed: dd_Smed_v6_14852_0_1, dd_Smed_v6_14852_0_1, [RH, Score=293, Expect=4e-89]} {RNA1509_17008, RNA1509_52088, RNA1509_59596} {RNA1310_3999, RNA1509_17008, RNA1509_52088, RNA1509_59596} {RNA1509_17008, RNA1509_52088, RNA1509_59596, RNA815_18383}
13. MligTC455_05690 31 0.64 Mlig455_056453

Neo: -

Age: -

Region-enriched R3: 4.051/0.01702

 0.955 - - - - - 0.955 Mlig455_056453 {REF} {Length: 1311} {Pfam: dUTPase [PF00692.21, score=80.3]} {RNA1509_52990} {RNA1310_21161} {RNA815_2664}
14. MligTC455_16064 205 4.27 Mlig455_026327

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.743

Region-enriched R3: 2.239/0.00850

 SLC39A14 0.955 - - - - - 0.955 Mlig455_026327 {REF} {Length: 2551} {Pfam: ZIP Zinc transporter [PF02535.24, score=177.4]} {Human: ENSG00000104635, SLC39A14, solute carrier family 39 member 14, [Score=187, Expect=6e-53]; ENSG00000196950, SLC39A10, solute carrier family 39 member 10, [Score=179, Expect=2e-48]} {Mouse: ENSMUSG00000022094, Slc39a14, solute carrier family 39 (zinc transporter), member 14, [Score=184, Expect=4e-52]} {Dmel: FBgn0036461, Zip71B, Zinc/iron regulated transporter-related protein 71B, [Score=144, Expect=3e-37]} {Celegans: WBGene00021936, zipt-20, Zrt (ZRT), Irt-(IRT-) like Protein Transporter, [Score=160, Expect=3e-44]} {Smed: dd_Smed_v6_8605_0_1, dd_Smed_v6_8605_0_1, [Score=213, Expect=2e-63]} {RNA1509_16476} {RNA1310_11294, RNA1509_16476} {RNA1509_16476, RNA815_5274}
15. MligTC455_48514 972 20.25 Mlig455_027662, Mlig455_047721

Neo: -

Age: -

 0.955 - - - 0.955 - -

Mlig455_027662 {REF} {Length: 653} {TRANSSPLICED} {Pfam: Zinc knuckle [PF13917.8, score=28.4]; Nuclear RNA-splicing-associated protein [PF10500.11, score=18.2]} {Dmel: FBgn0029873, CG3918, [Score=47.4, Expect=6e-07]} {RNA1509_22123} {RNA1310_43460.1} {RNA815_29061}

Mlig455_047721 {REF} {Length: 3002} {TRANSSPLICED} {Pfam: Zinc knuckle [PF13917.8, score=28.4]; Nuclear RNA-splicing-associated protein [PF10500.11, score=18.2]} {Dmel: FBgn0029873, CG3918, [Score=47.4, Expect=6e-07]} {RNA1509_22123, RNA1509_53985} {RNA1310_43460.1, RNA1509_22123, RNA1509_53985} {RNA1509_22123, RNA1509_53985, RNA815_29061}
16. MligTC455_25125 578 12.04 Mlig455_008191

Neo: -

Age: -

Region-enriched R4: 3.458/0.00027

 0.954 - - - - - 0.954 Mlig455_008191 {REF} {Length: 1118} {RNA1509_16045, RNA1509_52634, RNA1509_59237} {RNA1310_35530.2, RNA1509_52634, RNA1509_59237} {RNA1509_52634, RNA1509_59237, RNA815_17294.1}
17. MligTC455_45275 384 8 Mlig455_037525

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.804

Region-enriched R4: 2.211/0.00561

 0.95 - - - - - 0.950 Mlig455_037525 {REF} {Length: 1617} {Pfam: HYD1 signature containing ADP-ribosyltransferase [PF15633.8, score=44.2]} {RNA1509_38410, RNA1509_7973} {RNA1310_28627, RNA1509_38410, RNA1509_7973} {RNA1509_38410, RNA1509_7973, RNA815_9390.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA