Data search
Results for MligTC455_27688
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_27688 | 559 | 11.65 | Mlig455_020197 | Neo: - Age: - |
Mlig455_020197 {REF} {Length: 2249} {TRANSSPLICED} {RNA1509_26921} {RNA1310_13949} {RNA815_20428} |
Cumulative graph for MligTC455_27688
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.764 | 3.743 | 0.43126 | 1.00000 | |
| RegionR2 | 0.527 | 3.743 | 0.30593 | 0.69651 | |
| RegionR3 | -0.046 | 3.743 | 0.90448 | 1.00000 | |
| RegionR4 | -0.248 | 3.743 | 0.60769 | 0.91939 | |
| RegionR5 | -0.214 | 3.743 | 0.54956 | 0.91138 | |
| RegionR6 | -0.479 | 3.743 | 0.24494 | 0.83037 | |
| RegionR7 | -0.24 | 3.743 | 0.65505 | 1.00000 | |
| RegionR8 | -0.063 | 3.743 | 0.91932 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 0.31 | 3.743 | 0.82157 | 1.00000 | |
| RegenerationR2 | -0.104 | 3.743 | 0.81299 | 0.99381 | |
| RegenerationR3 | 0.245 | 3.743 | 0.62336 | 0.91765 | |
| RegenerationR4 | -0.096 | 3.743 | 0.84757 | 1.00000 | |
| RegenerationR5 | -0.079 | 3.743 | 0.86555 | 1.00000 | |
| RegenerationR6 | 1.101 | 3.743 | 0.02977 | 0.21537 | |
| RegenerationBL | 0.527 | 3.743 | 0.41610 | 0.78523 | |
| RegenerationTP | -0.345 | 3.743 | 0.61502 | 0.96954 |
Genes with expression patterns similar to MligTC455_27688
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_27688 | 559 | 11.65 | Mlig455_020197 | Neo: - Age: - |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_020197 {REF} {Length: 2249} {TRANSSPLICED} {RNA1509_26921} {RNA1310_13949} {RNA815_20428} | |
| 2. | MligTC455_46410 | 1146 | 23.87 | Mlig455_031534, Mlig455_056995 | Neo: - Age: - |
2.46 | - | - | - | 0.735 | 0.757 | 0.968 | Mlig455_031534 {REF} {Length: 2433} {TRANSSPLICED} {RNA1509_26386, RNA1509_8736} {RNA1310_8693, RNA1509_26386, RNA1509_8736} {RNA1509_26386, RNA1509_8736, RNA815_3175} Mlig455_056995 {REF} {Length: 2091} {RNA1509_8736} {RNA1310_8693} {RNA815_3175} |
|
| 3. | MligTC455_22093 | 630 | 13.13 | Mlig455_013083 | Neo: - Age: Down-Up-Up |
0.969 | - | - | - | 0.969 | - | - | Mlig455_013083 {REF} {Length: 1654} {TRANSSPLICED} {RNA1509_31997, RNA1509_35219} {RNA1310_19259, RNA1509_31997, RNA1509_35219} {RNA1509_31997, RNA1509_35219, RNA815_14122} | |
| 4. | MligTC455_50638 | 99 | 2.07 | Mlig455_027343 | Neo: - Age: - |
SSRP1 | 0.956 | - | - | - | 0.956 | - | - | Mlig455_027343 {REF} {Length: 2531} {TRANSSPLICED} {Pfam: POB3-like N-terminal PH domain [PF17292.4, score=82.6]; Histone chaperone Rttp106-like [PF08512.14, score=80.2]; Structure-specific recognition protein (SSRP1) [PF03531.16, score=79.1]; HMG (high mobility group) box [PF00505.21, score=75.5]; HMG-box domain [PF09011.12, score=54.7]; YABBY protein [PF04690.15, score=20.1]} {Human: ENSG00000149136, SSRP1, structure specific recognition protein 1, [RH, Score=557, Expect=0.0]} {Mouse: ENSMUSG00000027067, Ssrp1, structure specific recognition protein 1, [RH, Score=568, Expect=0.0]} {Dmel: FBgn0010278, Ssrp, Structure specific recognition protein, [RH, Score=444, Expect=3e-145]} {Celegans: WBGene00001973, hmg-3, FACT complex subunit ssrp1-B, [RH, Score=384, Expect=1e-122]} {Smed: dd_Smed_v6_3904_0_1, dd_Smed_v6_3904_0_1, [RH, Score=309, Expect=2e-96]} {RNA1509_24511, RNA1509_35204, RNA1509_44372, RNA1509_51872} {RNA1310_9322, RNA1509_35204, RNA1509_44372, RNA1509_51872} {RNA1509_35204, RNA1509_44372, RNA1509_51872, RNA815_4568} |
| 5. | MligTC455_23780 | 715 | 14.9 | Mlig455_016765 | Neo: Int S/G2/M Age: - Regeneration-upregulated R6: 1.869 Regeneration-enriched R6: 1.869 |
SNRNP200 | 0.954 | - | - | - | - | - | 0.954 | Mlig455_016765 {REF} {Length: 2988} {Pfam: Sec63 Brl domain [PF02889.18, score=245.8]; Helicase conserved C-terminal domain [PF00271.33, score=19.0]} {Human: ENSG00000144028, SNRNP200, small nuclear ribonucleoprotein U5 subunit 200, [Score=810, Expect=0.0]} {Mouse: ENSMUSG00000003660, Snrnp200, small nuclear ribonucleoprotein 200 (U5), [Score=810, Expect=0.0]} {Dmel: FBgn0263599, l(3)72Ab, lethal (3) 72Ab, [Score=811, Expect=0.0]} {Celegans: WBGene00012896, snrp-200, Putative U5 small nuclear ribonucleoprotein 200 kDa helicase, [Score=675, Expect=0.0]} {Smed: dd_Smed_v6_3022_0_1, dd_Smed_v6_3022_0_1, [Score=635, Expect=0.0]} {RNA1509_1464, RNA1509_51603} {RNA1310_469.2, RNA1509_51603} {RNA1509_51603, RNA815_1538} |
| 6. | MligTC455_53970 | 811 | 16.9 | Mlig455_057137 | Neo: - Age: logFC(26M/2M)=-0.190 |
PTPN4 | 0.952 | - | 0.952 | - | - | - | - | Mlig455_057137 {REF} {Length: 5387} {TRANSSPLICED} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=224.7]; FERM N-terminal domain [PF09379.12, score=77.6]; FERM C-terminal PH-like domain [PF09380.12, score=69.5]; FERM central domain [PF00373.20, score=66.0]; PDZ domain [PF00595.26, score=62.4]; FERM adjacent (FA) [PF08736.13, score=42.9]; Tyrosine phosphatase family [PF13350.8, score=20.2]} {Human: ENSG00000088179, PTPN4, protein tyrosine phosphatase, non-receptor type 4, [Score=756, Expect=0.0]} {Mouse: ENSMUSG00000026384, Ptpn4, protein tyrosine phosphatase, non-receptor type 4, [Score=769, Expect=0.0]} {Dmel: FBgn0261985, Ptpmeg, Protein tyrosine phosphatase Meg, [RH, Score=378, Expect=5e-115]} {Celegans: WBGene00004213, ptp-1, Tyrosine-protein phosphatase 1, [Score=417, Expect=3e-134]} {Smed: dd_Smed_v6_6928_0_2, dd_Smed_v6_6928_0_2, [Score=484, Expect=6e-155]} {RNA1509_4606} {RNA1310_4025, RNA1509_4606} {RNA1509_4606, RNA815_540.1} |
| 7. | MligTC455_46833 | 238 | 4.97 | Mlig455_069546 | Neo: - Age: - |
0.951 | - | - | - | - | - | 0.951 | Mlig455_069546 {REF} {Length: 3955} {RNA1509_41618} {RNA1310_38031} {RNA815_29978} |
Berezikov Lab - 2020-2021 © ERIBA