TomoSeq data search

Data search

Results for MligTC455_27746

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_27746

2246

46.80

Mlig455_026528

Neo: -

Age: -

USP43

Mlig455_026528 {REF} {Length: 4903} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=211.4]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=52.3]} {Human: ENSG00000154914, USP43, ubiquitin specific peptidase 43, [RH, Score=285, Expect=3e-80]} {Mouse: ENSMUSG00000020905, Usp43, ubiquitin specific peptidase 43, [RH, Score=287, Expect=3e-81]; ENSMUSG00000063317, Usp31, ubiquitin specific peptidase 31, [RH, Score=273, Expect=1e-75]} {Dmel: FBgn0050421, Usp15-31, Ubiquitin specific protease 15/31, [RH, Score=248, Expect=2e-67]} {Celegans: WBGene00019259, H34C03.2, Ubiquitin carboxyl-terminal hydrolase, [Score=111, Expect=8e-25]} {Smed: dd_Smed_v6_9753_0_1, dd_Smed_v6_9753_0_1, [RH, Score=219, Expect=1e-58]} {RNA1509_1499, RNA1509_24777, RNA1509_29215, RNA1509_30622, RNA1509_31713, RNA1509_60143} {RNA1310_1291, RNA1509_1499, RNA1509_24777, RNA1509_29215, RNA1509_30622, RNA1509_31713, RNA1509_60143} {RNA1509_1499, RNA1509_24777, RNA1509_29215, RNA1509_30622, RNA1509_31713, RNA1509_60143, RNA815_779.1}

Cumulative graph for MligTC455_27746

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.01	5.678	0.98730	1.00000
RegionR2	-0.422	5.678	0.15449	0.49171
RegionR3	0.026	5.678	0.91465	1.00000
RegionR4	0.626	5.678	0.03443	0.14967
RegionR5	-0.143	5.678	0.54468	0.90683
RegionR6	0.007	5.678	0.97870	1.00000
RegionR7	-0.36	5.678	0.24744	0.87328
RegionR8	0.257	5.678	0.45804	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.763	5.678	0.38516	1.00000
RegenerationR2	-0.143	5.678	0.60443	0.91742
RegenerationR3	-0.232	5.678	0.42763	0.81951
RegenerationR4	-0.577	5.678	0.05934	0.39068
RegenerationR5	-0.127	5.678	0.65793	0.93489
RegenerationR6	-0.021	5.678	0.94289	1.00000
RegenerationBL	0.321	5.678	0.28164	0.64258
RegenerationTP	-0.703	5.678	0.04951	0.36465

Genes with expression patterns similar to MligTC455_27746

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_27746	2246	46.8	Mlig455_026528	Neo: - Age: -	USP43	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_026528 {REF} {Length: 4903} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=211.4]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=52.3]} {Human: ENSG00000154914, USP43, ubiquitin specific peptidase 43, [RH, Score=285, Expect=3e-80]} {Mouse: ENSMUSG00000020905, Usp43, ubiquitin specific peptidase 43, [RH, Score=287, Expect=3e-81]; ENSMUSG00000063317, Usp31, ubiquitin specific peptidase 31, [RH, Score=273, Expect=1e-75]} {Dmel: FBgn0050421, Usp15-31, Ubiquitin specific protease 15/31, [RH, Score=248, Expect=2e-67]} {Celegans: WBGene00019259, H34C03.2, Ubiquitin carboxyl-terminal hydrolase, [Score=111, Expect=8e-25]} {Smed: dd_Smed_v6_9753_0_1, dd_Smed_v6_9753_0_1, [RH, Score=219, Expect=1e-58]} {RNA1509_1499, RNA1509_24777, RNA1509_29215, RNA1509_30622, RNA1509_31713, RNA1509_60143} {RNA1310_1291, RNA1509_1499, RNA1509_24777, RNA1509_29215, RNA1509_30622, RNA1509_31713, RNA1509_60143} {RNA1509_1499, RNA1509_24777, RNA1509_29215, RNA1509_30622, RNA1509_31713, RNA1509_60143, RNA815_779.1}
2.	MligTC455_27747	2105	43.85	Mlig455_026626	Neo: - Age: -	USP43	4.695	0.992	0.995	0.983	0.980	0.745	-	Mlig455_026626 {REF} {Length: 4552} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=211.3]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=52.1]} {Human: ENSG00000154914, USP43, ubiquitin specific peptidase 43, [RH, Score=285, Expect=5e-80]} {Mouse: ENSMUSG00000020905, Usp43, ubiquitin specific peptidase 43, [RH, Score=287, Expect=1e-80]; ENSMUSG00000063317, Usp31, ubiquitin specific peptidase 31, [RH, Score=274, Expect=1e-75]} {Dmel: FBgn0050421, Usp15-31, Ubiquitin specific protease 15/31, [RH, Score=248, Expect=2e-67]} {Celegans: WBGene00019259, H34C03.2, Ubiquitin carboxyl-terminal hydrolase, [Score=113, Expect=3e-25]} {Smed: dd_Smed_v6_9753_0_1, dd_Smed_v6_9753_0_1, [RH, Score=218, Expect=3e-58]} {RNA1509_1499, RNA1509_50475, RNA1509_57789} {RNA1310_1291, RNA1509_50475, RNA1509_57789} {RNA1509_50475, RNA1509_57789, RNA815_779.1}
3.	MligTC455_34941	1300	27.08	Mlig455_050149	Neo: - Age: logFC(26M/2M)=0.240	MIA2	0.952	-	-	-	0.952	-	-	Mlig455_050149 {REF} {Length: 7267} {TRANSSPLICED} {Human: ENSG00000150527, MIA2, MIA SH3 domain ER export factor 2, [RH, Score=67.0, Expect=3e-10]; ENSG00000285123, CTAGE6, CTAGE family member 6, [RH, Score=65.9, Expect=6e-10]; ENSG00000271321, CTAGE6, CTAGE family member 6, [RH, Score=65.9, Expect=6e-10]; ENSG00000285172, CTAGE15, CTAGE family member 15, [RH, Score=65.5, Expect=7e-10]; ENSG00000271079, CTAGE15, CTAGE family member 15, [RH, Score=65.5, Expect=7e-10]; ENSG00000236761, CTAGE9, CTAGE family member 9, [RH, Score=65.1, Expect=9e-10]} {Mouse: ENSMUSG00000056050, Mia3, melanoma inhibitory activity 3, [RH, Score=64.3, Expect=7e-10]; ENSMUSG00000021000, Mia2, melanoma inhibitory activity 2, [RH, Score=62.8, Expect=4e-09]} {Dmel: FBgn0031842, Tango1, Transport and Golgi organization 1, [RH, Score=82.4, Expect=3e-15]} {RNA1509_2081, RNA1509_43176} {RNA1310_854.2, RNA1509_43176} {RNA1509_43176, RNA815_1012.1}
4.	MligTC455_39536	2251	46.9	Mlig455_008794, Mlig455_008925	Neo: - Age: -	TPM1, TPM2	0.952	-	-	-	0.952	-	-	Mlig455_008794 {REF} {Length: 3744} {Pfam: Tropomyosin [PF00261.22, score=52.0]; Tropomyosin like [PF12718.9, score=40.0]; Spc19 [PF08287.13, score=25.6]} {Human: ENSG00000198467, TPM2, tropomyosin 2, [Score=57.4, Expect=2e-08]; ENSG00000143549, TPM3, tropomyosin 3, [Score=56.6, Expect=3e-08]; ENSG00000140416, TPM1, tropomyosin 1, [Score=54.7, Expect=1e-07]} {Mouse: ENSMUSG00000058126, Tpm3-rs7, tropomyosin 3, related sequence 7, [Score=57.0, Expect=1e-08]; ENSMUSG00000027940, Tpm3, tropomyosin 3, gamma, [Score=56.2, Expect=2e-08]; ENSMUSG00000028464, Tpm2, tropomyosin 2, beta, [Score=55.5, Expect=5e-08]} {Dmel: FBgn0003721, Tm1, Tropomyosin 1, [Score=86.7, Expect=1e-17]} {Smed: dd_Smed_v6_405_0_1, dd_Smed_v6_405_0_1, [Score=64.3, Expect=3e-11]} {RNA1509_15131} {RNA1310_18171} {RNA815_7914.1} Mlig455_008925 {REF} {Length: 4710} {Pfam: Tropomyosin [PF00261.22, score=185.7]; Tropomyosin like [PF12718.9, score=53.7]; Spc19 [PF08287.13, score=24.0]} {Human: ENSG00000140416, TPM1, tropomyosin 1, [Score=120, Expect=3e-30]; ENSG00000143549, TPM3, tropomyosin 3, [Score=117, Expect=4e-29]} {Mouse: ENSMUSG00000027940, Tpm3, tropomyosin 3, gamma, [Score=121, Expect=1e-30]; ENSMUSG00000032366, Tpm1, tropomyosin 1, alpha, [Score=118, Expect=1e-29]; ENSMUSG00000031799, Tpm4, tropomyosin 4, [Score=115, Expect=2e-28]} {Dmel: FBgn0003721, Tm1, Tropomyosin 1, [Score=154, Expect=2e-39]} {Celegans: WBGene00002978, lev-11, Tropomyosin isoforms a/b/d/f, [Score=140, Expect=1e-37]} {Smed: dd_Smed_v6_436_0_1, dd_Smed_v6_436_0_1, [Score=142, Expect=2e-38]} {RNA1509_15131} {RNA1310_18171} {RNA815_13599}
5.	MligTC455_31026	213	4.44	Mlig455_070678	Neo: - Age: -		0.951	-	-	-	0.951	-	-	Mlig455_070678 {REF} {Length: 2471} {TRANSSPLICED} {RNA1509_24158} {RNA1310_3578.2} {RNA815_12643}
6.	MligTC455_08782	415	8.65	Mlig455_039293	Neo: - Age: Up-Down-Up Region-enriched R5: 1.174/0.03939	UBR5	0.95	-	-	-	0.950	-	-	Mlig455_039293 {REF} {Length: 3023} {Pfam: HECT-domain (ubiquitin-transferase) [PF00632.27, score=209.1]; Poly-adenylate binding protein, unique domain [PF00658.20, score=73.3]} {Human: ENSG00000104517, UBR5, ubiquitin protein ligase E3 component n-recognin 5, [RH, Score=422, Expect=1e-143]} {Mouse: ENSMUSG00000037487, Ubr5, ubiquitin protein ligase E3 component n-recognin 5, [RH, Score=421, Expect=9e-132]} {Dmel: FBgn0002431, hyd, hyperplastic discs, [Score=421, Expect=7e-132]} {Celegans: WBGene00009460, ubr-5, UBR E3 ubiquitin ligase homolog, [RH, Score=246, Expect=2e-71]} {Smed: dd_Smed_v6_7658_0_1, dd_Smed_v6_7658_0_1, [RH, Score=312, Expect=2e-94]} {RNA1509_9074} {RNA1310_4179.1} {RNA815_749}

Berezikov Lab - 2020-2021 © ERIBA