TomoSeq data search

Data search

Results for MligTC455_27783

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_27783

1484

30.92

Mlig455_035810

Neo: -

Age: Down-Up-Down

Region-enriched R2: 1.770/0.04450
Region-enriched R6: 1.740/0.02899

PAK1

Mlig455_035810 {REF} {Length: 4597} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=236.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=161.7]; P21-Rho-binding domain [PF00786.30, score=38.5]; ABC1 atypical kinase-like domain [PF03109.18, score=25.7]; Kinase-like [PF14531.8, score=23.7]; Fungal protein kinase [PF17667.3, score=22.8]; Phosphotransferase enzyme family [PF01636.25, score=20.2]} {Human: ENSG00000149269, PAK1, p21 (RAC1) activated kinase 1, [Score=335, Expect=3e-107]; ENSG00000180370, PAK2, p21 (RAC1) activated kinase 2, [Score=335, Expect=1e-107]; ENSG00000077264, PAK3, p21 (RAC1) activated kinase 3, [Score=333, Expect=2e-106]} {Mouse: ENSMUSG00000030774, Pak1, p21 (RAC1) activated kinase 1, [Score=335, Expect=2e-107]; ENSMUSG00000022781, Pak2, p21 (RAC1) activated kinase 2, [Score=334, Expect=2e-107]; ENSMUSG00000031284, Pak3, p21 (RAC1) activated kinase 3, [Score=333, Expect=1e-106]} {Dmel: FBgn0267698, Pak, p21-activated kinase, [Score=336, Expect=7e-105]} {Celegans: WBGene00003144, max-2, Serine/threonine-protein kinase max-2, [Score=325, Expect=3e-105]} {Smed: dd_Smed_v6_1765_0_1, dd_Smed_v6_1765_0_1, [RH, Score=367, Expect=2e-121]} {RNA1509_14484, RNA1509_18868, RNA1509_31969, RNA1509_33044, RNA1509_33197, RNA1509_4715, RNA1509_56367} {RNA1310_5360.1, RNA1509_14484, RNA1509_18868, RNA1509_31969, RNA1509_33044, RNA1509_33197, RNA1509_4715, RNA1509_56367} {RNA1509_14484, RNA1509_18868, RNA1509_31969, RNA1509_33044, RNA1509_33197, RNA1509_4715, RNA1509_56367, RNA815_4593}

Cumulative graph for MligTC455_27783

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-8.594	5.125	0.00056	0.07779
RegionR2	1.77	5.125	0.00283	0.04450
RegionR3	0.994	5.125	0.14239	0.64282
RegionR4	0.534	5.125	0.52170	0.84649
RegionR5	1.388	5.125	0.00973	0.05662
RegionR6	1.74	5.125	0.00064	0.02899
RegionR7	1.383	5.125	0.03616	0.36246
RegionR8	0.785	5.125	0.38840	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	8.038	5.125	0.01211	0.47182
RegenerationR2	0.379	5.125	0.22890	0.67668
RegenerationR3	0.873	5.125	0.01380	0.21551
RegenerationR4	0.553	5.125	0.12749	0.54203
RegenerationR5	0.246	5.125	0.44451	0.82742
RegenerationR6	0.332	5.125	0.32541	0.67137
RegenerationBL	1.009	5.125	0.00475	0.06339
RegenerationTP	0.633	5.125	0.13910	0.55683

Genes with expression patterns similar to MligTC455_27783

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_27783	1484	30.92	Mlig455_035810	Neo: - Age: Down-Up-Down Region-enriched R2: 1.770/0.04450 Region-enriched R6: 1.740/0.02899	PAK1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_035810 {REF} {Length: 4597} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=236.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=161.7]; P21-Rho-binding domain [PF00786.30, score=38.5]; ABC1 atypical kinase-like domain [PF03109.18, score=25.7]; Kinase-like [PF14531.8, score=23.7]; Fungal protein kinase [PF17667.3, score=22.8]; Phosphotransferase enzyme family [PF01636.25, score=20.2]} {Human: ENSG00000149269, PAK1, p21 (RAC1) activated kinase 1, [Score=335, Expect=3e-107]; ENSG00000180370, PAK2, p21 (RAC1) activated kinase 2, [Score=335, Expect=1e-107]; ENSG00000077264, PAK3, p21 (RAC1) activated kinase 3, [Score=333, Expect=2e-106]} {Mouse: ENSMUSG00000030774, Pak1, p21 (RAC1) activated kinase 1, [Score=335, Expect=2e-107]; ENSMUSG00000022781, Pak2, p21 (RAC1) activated kinase 2, [Score=334, Expect=2e-107]; ENSMUSG00000031284, Pak3, p21 (RAC1) activated kinase 3, [Score=333, Expect=1e-106]} {Dmel: FBgn0267698, Pak, p21-activated kinase, [Score=336, Expect=7e-105]} {Celegans: WBGene00003144, max-2, Serine/threonine-protein kinase max-2, [Score=325, Expect=3e-105]} {Smed: dd_Smed_v6_1765_0_1, dd_Smed_v6_1765_0_1, [RH, Score=367, Expect=2e-121]} {RNA1509_14484, RNA1509_18868, RNA1509_31969, RNA1509_33044, RNA1509_33197, RNA1509_4715, RNA1509_56367} {RNA1310_5360.1, RNA1509_14484, RNA1509_18868, RNA1509_31969, RNA1509_33044, RNA1509_33197, RNA1509_4715, RNA1509_56367} {RNA1509_14484, RNA1509_18868, RNA1509_31969, RNA1509_33044, RNA1509_33197, RNA1509_4715, RNA1509_56367, RNA815_4593}
2.	MligTC455_41549	1912	39.84	Mlig455_018620	Neo: - Age: Down-Up-Down		2.628	0.735	-	-	0.935	0.958	-	Mlig455_018620 {REF} {Length: 1355} {RNA1509_11971} {RNA1310_12238} {RNA815_7772}
3.	MligTC455_22201	892	18.59	Mlig455_045089	Neo: - Age: - Region-enriched R7: 1.426/0.02956 Regeneration-upregulated BL: 1.589 Regeneration-enriched BL: 1.589	TLL1	1.822	-	-	-	0.955	0.867	-	Mlig455_045089 {REF} {Length: 3960} {Pfam: CUB domain [PF00431.22, score=500.8]; Astacin (Peptidase family M12A) [PF01400.26, score=226.0]; Coagulation Factor Xa inhibitory site [PF14670.8, score=57.7]; Calcium-binding EGF domain [PF07645.17, score=41.2]; Complement Clr-like EGF-like [PF12662.9, score=32.2]; EGF domain [PF12947.9, score=24.5]; CUB-like domain [PF02408.22, score=24.0]; Human growth factor-like EGF [PF12661.9, score=21.4]; EGF-like domain [PF00008.29, score=20.3]} {Human: ENSG00000038295, TLL1, tolloid like 1, [RH, Score=877, Expect=0.0]; ENSG00000095587, TLL2, tolloid like 2, [RH, Score=876, Expect=0.0]; ENSG00000168487, BMP1, bone morphogenetic protein 1, [RH, Score=865, Expect=0.0]} {Mouse: ENSMUSG00000025013, Tll2, tolloid-like 2, [RH, Score=881, Expect=0.0]; ENSMUSG00000022098, Bmp1, bone morphogenetic protein 1, [RH, Score=867, Expect=0.0]; ENSMUSG00000053626, Tll1, tolloid-like, [RH, Score=863, Expect=0.0]} {Dmel: FBgn0004885, tok, tolkin, [RH, Score=864, Expect=0.0]} {Celegans: WBGene00003555, nas-39, Zinc metalloproteinase nas-39, [RH, Score=716, Expect=0.0]} {Smed: dd_Smed_v6_5652_0_1, dd_Smed_v6_5652_0_1, [RH, Score=888, Expect=0.0]} {RNA1509_7883} {RNA1310_2749, RNA1509_7883} {RNA1509_7883, RNA815_1455}
4.	MligTC455_27286	330	6.88	Mlig455_017318	Neo: - Age: -		0.966	-	-	-	0.966	-	-	Mlig455_017318 {REF} {Length: 2873} {RNA1509_26378} {RNA1310_61.2} {RNA815_11919}
5.	MligTC455_43550	1501	31.28	Mlig455_065262	Neo: - Age: -	SSBP3	0.956	-	-	-	0.956	-	-	Mlig455_065262 {REF} {Length: 4032} {Human: ENSG00000157216, SSBP3, single stranded DNA binding protein 3, [RH, Score=186, Expect=1e-54]; ENSG00000145687, SSBP2, single stranded DNA binding protein 2, [RH, Score=185, Expect=1e-54]} {Mouse: ENSMUSG00000061887, Ssbp3, single-stranded DNA binding protein 3, [RH, Score=186, Expect=1e-54]; ENSMUSG00000003992, Ssbp2, single-stranded DNA binding protein 2, [RH, Score=185, Expect=8e-55]} {Dmel: FBgn0011481, Ssdp, Sequence-specific single-stranded DNA-binding protein, [RH, Score=192, Expect=2e-56]} {Celegans: WBGene00012990, sam-10, Single-stranded DNA-binding protein homolog sam-10, [RH, Score=91.3, Expect=6e-20]} {Smed: dd_Smed_v6_3876_0_1, dd_Smed_v6_3876_0_1, [RH, Score=178, Expect=2e-51]} {RNA1509_12630, RNA1509_17189, RNA1509_19453, RNA1509_29837, RNA1509_36215, RNA1509_39481, RNA1509_51894, RNA1509_55152} {RNA1310_27347, RNA1509_12630, RNA1509_17189, RNA1509_19453, RNA1509_29837, RNA1509_36215, RNA1509_39481, RNA1509_51894, RNA1509_55152} {RNA1509_12630, RNA1509_17189, RNA1509_19453, RNA1509_29837, RNA1509_36215, RNA1509_39481, RNA1509_51894, RNA1509_55152, RNA815_18789}
6.	MligTC455_35049	1260	26.25	Mlig455_033678, Mlig455_050141	Neo: Irradiation Age: logFC(26M/2M)=0.277 Region-enriched R5: 1.083/0.00294	DENND5B	0.95	-	-	0.950	-	-	-	Mlig455_033678 {REF} {Length: 5690} {TRANSSPLICED} {Pfam: DENN (AEX-3) domain [PF02141.23, score=148.0]; RUN domain [PF02759.21, score=117.5]; PLAT/LH2 domain [PF01477.25, score=45.5]; uDENN domain [PF03456.20, score=44.5]; dDENN domain [PF03455.21, score=43.9]} {Human: ENSG00000170456, DENND5B, DENN domain containing 5B, [Score=370, Expect=2e-106]; ENSG00000184014, DENND5A, DENN domain containing 5A, [Score=362, Expect=1e-103]} {Mouse: ENSMUSG00000035901, Dennd5a, DENN/MADD domain containing 5A, [RH, Score=364, Expect=2e-104]} {Dmel: FBgn0035229, pns, pinstripe, [RH, Score=468, Expect=5e-140]} {Celegans: WBGene00016889, lst-6, Lateral Signaling Target, [RH, Score=274, Expect=2e-74]} {Smed: dd_Smed_v6_7039_0_1, dd_Smed_v6_7039_0_1, [RH, Score=581, Expect=0.0]} {RNA1509_10037} {RNA1310_2524.1, RNA1509_10037} {RNA1509_10037, RNA815_826.1} Mlig455_050141 {REF} {Length: 5827} {TRANSSPLICED} {Pfam: DENN (AEX-3) domain [PF02141.23, score=148.7]; RUN domain [PF02759.21, score=118.1]; PLAT/LH2 domain [PF01477.25, score=45.5]; uDENN domain [PF03456.20, score=44.4]; dDENN domain [PF03455.21, score=43.8]} {Human: ENSG00000170456, DENND5B, DENN domain containing 5B, [Score=370, Expect=5e-106]; ENSG00000184014, DENND5A, DENN domain containing 5A, [Score=362, Expect=3e-103]} {Mouse: ENSMUSG00000030313, Dennd5b, DENN/MADD domain containing 5B, [Score=379, Expect=9e-110]; ENSMUSG00000035901, Dennd5a, DENN/MADD domain containing 5A, [Score=363, Expect=3e-104]} {Dmel: FBgn0035229, pns, pinstripe, [RH, Score=472, Expect=2e-141]} {Celegans: WBGene00016889, lst-6, Lateral Signaling Target, [RH, Score=274, Expect=1e-74]} {Smed: dd_Smed_v6_7039_0_1, dd_Smed_v6_7039_0_1, [RH, Score=511, Expect=2e-160]} {RNA1509_10037} {RNA1310_2455.1} {RNA815_826.1}

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