TomoSeq data search

Data search

Results for MligTC455_27795

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_27795

564

11.75

Mlig455_005628

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.644

HELZ2

Mlig455_005628 {REF} {Length: 8036} {Pfam: RNB domain [PF00773.21, score=174.9]; AAA domain [PF13086.8, score=132.5]; AAA domain [PF13087.8, score=129.4]; UvrD-like helicase C-terminal domain [PF13361.8, score=21.5]; Viral (Superfamily 1) RNA helicase [PF01443.20, score=21.3]; AAA domain [PF13604.8, score=21.2]; UvrD-like helicase C-terminal domain [PF13538.8, score=18.8]} {Human: ENSG00000130589, HELZ2, helicase with zinc finger 2, [Score=171, Expect=9e-42]} {Mouse: ENSMUSG00000027580, Helz2, helicase with zinc finger 2, transcriptional coactivator, [Score=149, Expect=5e-35]} {Dmel: FBgn0035111, Dis3l2, Dis3 like 3'-5' exoribonuclease 2, [Score=118, Expect=4e-26]} {Celegans: WBGene00018612, disl-2, DIS3-like exonuclease 2, [Score=108, Expect=3e-23]} {Smed: dd_Smed_v6_8176_0_1, dd_Smed_v6_8176_0_1, [RH, Score=318, Expect=2e-87]} {RNA1509_28701, RNA1509_35591} {RNA1310_587.1, RNA1509_28701, RNA1509_35591} {RNA1509_28701, RNA1509_35591, RNA815_982.1}

Cumulative graph for MligTC455_27795

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.214	4.002	0.86315	1.00000
RegionR2	-0.414	4.002	0.54008	0.90855
RegionR3	-0.083	4.002	0.87555	1.00000
RegionR4	0.366	4.002	0.57533	0.89262
RegionR5	0.263	4.002	0.58704	0.94548
RegionR6	-0.226	4.002	0.67205	1.00000
RegionR7	-0.645	4.002	0.34166	0.97876
RegionR8	0.954	4.002	0.15867	0.72092

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-7.228	4.002	0.09491	0.80503
RegenerationR2	0.198	4.002	0.73868	0.96921
RegenerationR3	-0.269	4.002	0.67196	0.93763
RegenerationR4	-0.717	4.002	0.31239	0.75196
RegenerationR5	0.527	4.002	0.38057	0.78699
RegenerationR6	-0.308	4.002	0.64123	0.89389
RegenerationBL	-0.567	4.002	0.40950	0.77866
RegenerationTP	-1.679	4.002	0.04050	0.33464

Genes with expression patterns similar to MligTC455_27795

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_27795	564	11.75	Mlig455_005628	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.644	HELZ2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_005628 {REF} {Length: 8036} {Pfam: RNB domain [PF00773.21, score=174.9]; AAA domain [PF13086.8, score=132.5]; AAA domain [PF13087.8, score=129.4]; UvrD-like helicase C-terminal domain [PF13361.8, score=21.5]; Viral (Superfamily 1) RNA helicase [PF01443.20, score=21.3]; AAA domain [PF13604.8, score=21.2]; UvrD-like helicase C-terminal domain [PF13538.8, score=18.8]} {Human: ENSG00000130589, HELZ2, helicase with zinc finger 2, [Score=171, Expect=9e-42]} {Mouse: ENSMUSG00000027580, Helz2, helicase with zinc finger 2, transcriptional coactivator, [Score=149, Expect=5e-35]} {Dmel: FBgn0035111, Dis3l2, Dis3 like 3'-5' exoribonuclease 2, [Score=118, Expect=4e-26]} {Celegans: WBGene00018612, disl-2, DIS3-like exonuclease 2, [Score=108, Expect=3e-23]} {Smed: dd_Smed_v6_8176_0_1, dd_Smed_v6_8176_0_1, [RH, Score=318, Expect=2e-87]} {RNA1509_28701, RNA1509_35591} {RNA1310_587.1, RNA1509_28701, RNA1509_35591} {RNA1509_28701, RNA1509_35591, RNA815_982.1}
2.	MligTC455_26037	2717	56.6	Mlig455_059001	Neo: - Age: -	GPT2	1.732	-	-	-	0.966	0.766	-	Mlig455_059001 {REF} {Length: 2157} {TRANSSPLICED} {Pfam: Aminotransferase class I and II [PF00155.23, score=118.1]} {Human: ENSG00000166123, GPT2, glutamic--pyruvic transaminase 2, [RH, Score=588, Expect=0.0]; ENSG00000167701, GPT, glutamic--pyruvic transaminase, [RH, Score=578, Expect=0.0]} {Mouse: ENSMUSG00000022546, Gpt, glutamic pyruvic transaminase, soluble, [RH, Score=594, Expect=0.0]; ENSMUSG00000031700, Gpt2, glutamic pyruvate transaminase (alanine aminotransferase) 2, [RH, Score=592, Expect=0.0]} {Dmel: FBgn0030478, CG1640, [RH, Score=575, Expect=0.0]} {Celegans: WBGene00016333, C32F10.8, [RH, Score=550, Expect=0.0]} {Smed: dd_Smed_v6_2988_0_1, dd_Smed_v6_2988_0_1, [RH, Score=646, Expect=0.0]} {RNA1509_1361, RNA1509_15189, RNA1509_31918, RNA1509_53011} {RNA1310_12302.1, RNA1509_1361, RNA1509_15189, RNA1509_31918, RNA1509_53011} {RNA1509_1361, RNA1509_15189, RNA1509_31918, RNA1509_53011, RNA815_4235.1}
3.	MligTC455_08978	109	2.26	Mlig455_042158, Mlig455_065882	Neo: - Age: -	NPRL3	0.963	-	-	-	-	0.963	-	Mlig455_042158 {REF} {Length: 3580} {TRANSSPLICED} {Pfam: Nitrogen Permease regulator of amino acid transport activity 3 [PF03666.15, score=108.7]; Kelch motif [PF13854.8, score=33.0]; Kelch motif [PF13964.8, score=25.2]; Kelch motif [PF01344.27, score=23.5]; Galactose oxidase, central domain [PF13415.8, score=19.4]} {Human: ENSG00000103148, NPRL3, NPR3 like, GATOR1 complex subunit, [RH, Score=186, Expect=2e-49]} {Mouse: ENSMUSG00000020289, Nprl3, nitrogen permease regulator-like 3, [RH, Score=188, Expect=2e-50]} {Dmel: FBgn0036397, Nprl3, Nitrogen permease regulator-like 3, [RH, Score=139, Expect=5e-34]} {Celegans: WBGene00018072, nprl-3, GATOR complex protein NPRL3, [Score=72.8, Expect=7e-13]} {Smed: dd_Smed_v6_7438_0_1, dd_Smed_v6_7438_0_1, [RH, Score=151, Expect=6e-40]} {RNA1509_28294} {RNA1310_6391.1} {RNA815_6739} Mlig455_065882 {REF} {Length: 4797} {TRANSSPLICED} {Pfam: Nitrogen Permease regulator of amino acid transport activity 3 [PF03666.15, score=55.5]; Kelch motif [PF13854.8, score=38.0]; Kelch motif [PF13964.8, score=28.2]; Kelch motif [PF01344.27, score=26.7]; Galactose oxidase, central domain [PF13415.8, score=22.1]} {Human: ENSG00000103148, NPRL3, NPR3 like, GATOR1 complex subunit, [Score=104, Expect=5e-23]} {Mouse: ENSMUSG00000020289, Nprl3, nitrogen permease regulator-like 3, [Score=105, Expect=3e-23]} {Dmel: FBgn0036397, Nprl3, Nitrogen permease regulator-like 3, [Score=69.3, Expect=6e-12]} {Celegans: WBGene00018072, nprl-3, GATOR complex protein NPRL3, [Score=58.5, Expect=1e-08]} {Smed: dd_Smed_v6_7438_0_1, dd_Smed_v6_7438_0_1, [RH, Score=150, Expect=3e-40]} {RNA1509_28294} {RNA1310_6391.1} {RNA815_6739}
4.	MligTC455_18734	392	8.18	Mlig455_026722	Neo: - Age: -	SIDT1	0.958	-	-	0.958	-	-	-	Mlig455_026722 {REF} {Length: 4383} {Pfam: dsRNA-gated channel SID-1 [PF13965.8, score=676.5]} {Human: ENSG00000072858, SIDT1, SID1 transmembrane family member 1, [RH, Score=638, Expect=0.0]} {Mouse: ENSMUSG00000022696, Sidt1, SID1 transmembrane family, member 1, [RH, Score=612, Expect=0.0]} {Celegans: WBGene00006477, chup-1, CHolesterol UPtake associated, [RH, Score=300, Expect=4e-89]} {Smed: dd_Smed_v6_8407_0_1, dd_Smed_v6_8407_0_1, [RH, Score=491, Expect=6e-162]} {RNA1509_19245} {RNA1310_4118} {RNA815_1796}
5.	MligTC455_43614	1736	36.18	Mlig455_059631, Mlig455_059645	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.374		0.956	-	-	0.956	-	-	-	Mlig455_059631 {REF} {Length: 371} {TRANSSPLICED} {RNA1509_13525} {RNA1310_92681} {RNA815_47853.1} Mlig455_059645 {REF} {Length: 374} {TRANSSPLICED} {RNA1509_13525} {RNA1310_92681, RNA1509_13525} {RNA1509_13525, RNA815_47853.1}
6.	MligTC455_36515	487	10.15	Mlig455_024333	Neo: - Age: - Regeneration-downregulated BL: -4.316 Regeneration-depleted BL: -4.316		0.954	-	-	0.954	-	-	-	Mlig455_024333 {REF} {Length: 839} {RNA1509_48477} {RNA1310_73282, RNA1509_48477} {RNA1509_48477, RNA815_40394}
7.	MligTC455_36516	495	10.32	Mlig455_032048	Neo: - Age: - Regeneration-downregulated BL: -4.315 Regeneration-depleted BL: -4.315		0.954	-	-	0.954	-	-	-	Mlig455_032048 {REF} {Length: 2397} {TRANSSPLICED} {Smed: dd_Smed_v6_8694_0_1, dd_Smed_v6_8694_0_1, [RH, Score=74.7, Expect=7e-17]} {RNA1509_19681, RNA1509_42038} {RNA1310_1563, RNA1509_19681, RNA1509_42038} {RNA1509_19681, RNA1509_42038, RNA815_36419}

Berezikov Lab - 2020-2021 © ERIBA