Data search
Results for MligTC455_28004
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_28004 | 446 | 9.28 | Mlig455_048494 | Neo: - Age: - |
Mlig455_048494 {REF} {Length: 2408} {TRANSSPLICED} {Pfam: Dystroglycan (Dystrophin-associated glycoprotein 1) [PF05454.13, score=29.4]} {RNA1509_25059} {RNA1310_35177} {RNA815_7915.1} |
Cumulative graph for MligTC455_28004
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.233 | 3.625 | 0.37147 | 1.00000 | |
| RegionR2 | 0.592 | 3.625 | 0.21948 | 0.58770 | |
| RegionR3 | -0.025 | 3.625 | 0.95418 | 1.00000 | |
| RegionR4 | 0.275 | 3.625 | 0.55851 | 0.87850 | |
| RegionR5 | 0.731 | 3.625 | 0.03523 | 0.14537 | |
| RegionR6 | 0.444 | 3.625 | 0.27810 | 0.86804 | |
| RegionR7 | -0.098 | 3.625 | 0.86392 | 1.00000 | |
| RegionR8 | -0.686 | 3.625 | 0.35494 | 0.98896 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -5.547 | 3.625 | 0.29446 | 0.99193 | |
| RegenerationR2 | 0.124 | 3.625 | 0.71555 | 0.96210 | |
| RegenerationR3 | 0.028 | 3.625 | 0.94999 | 1.00000 | |
| RegenerationR4 | -0.077 | 3.625 | 0.86148 | 1.00000 | |
| RegenerationR5 | 0.169 | 3.625 | 0.63542 | 0.92466 | |
| RegenerationR6 | 0.373 | 3.625 | 0.37246 | 0.71538 | |
| RegenerationBL | -0.991 | 3.625 | 0.17272 | 0.49792 | |
| RegenerationTP | 1.01 | 3.625 | 0.08492 | 0.46121 |
Genes with expression patterns similar to MligTC455_28004
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_28004 | 446 | 9.28 | Mlig455_048494 | Neo: - Age: - |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_048494 {REF} {Length: 2408} {TRANSSPLICED} {Pfam: Dystroglycan (Dystrophin-associated glycoprotein 1) [PF05454.13, score=29.4]} {RNA1509_25059} {RNA1310_35177} {RNA815_7915.1} | |
| 2. | MligTC455_17819 | 776 | 16.16 | Mlig455_029976 | Neo: - Age: Down-Up-Down |
GUCA1B | 1.8 | - | - | 0.955 | - | - | 0.845 | Mlig455_029976 {REF} {Length: 1140} {Pfam: EF hand [PF00036.34, score=74.9]; EF-hand domain pair [PF13499.8, score=71.2]; EF hand [PF13202.8, score=63.7]; EF-hand domain [PF13405.8, score=63.2]; EF-hand domain pair [PF13833.8, score=52.6]} {Human: ENSG00000112599, GUCA1B, guanylate cyclase activator 1B, [Score=69.7, Expect=1e-14]} {Mouse: ENSMUSG00000036438, Calm2, calmodulin 2, [Score=52.0, Expect=8e-09]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=51.6, Expect=2e-08]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=51.6, Expect=2e-08]; ENSMUSG00000028310, Ppp3r2, protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II), [Score=50.4, Expect=1e-07]; ENSMUSG00000033953, Ppp3r1, protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I), [Score=50.4, Expect=8e-08]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=50.4, Expect=5e-08]} {Celegans: WBGene00003565, ncs-3, Neuronal Calcium Sensor family, [Score=67.8, Expect=3e-14]} {Smed: dd_Smed_v6_14450_0_1, dd_Smed_v6_14450_0_1, [Score=52.0, Expect=1e-08]} {RNA1509_25226} {RNA1310_34058} {RNA815_15719} |
| 3. | MligTC455_54013 | 602 | 12.55 | Mlig455_013271 | Neo: - Age: Down-Up-Up |
NLRC3 | 1.669 | 0.708 | - | 0.961 | - | - | - | Mlig455_013271 {REF} {Length: 2160} {Human: ENSG00000167984, NLRC3, NLR family CARD domain containing 3, [Score=71.6, Expect=3e-12]} {Mouse: ENSMUSG00000059114, Lrrc74a, leucine rich repeat containing 74A, [Score=86.7, Expect=1e-17]} {Dmel: FBgn0033212, LRR, Leucine-rich repeat, [Score=67.8, Expect=2e-11]} {Smed: dd_Smed_v6_15909_0_1, dd_Smed_v6_15909_0_1, [Score=84.0, Expect=5e-17]} {RNA1509_4953} {RNA1310_8767.1} {RNA815_3260} |
| 4. | MligTC455_17044 | 502 | 10.46 | Mlig455_015598 | Neo: - |
PUF60 | 0.965 | - | - | 0.965 | - | - | - | Mlig455_015598 {REF} {Length: 4506} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=145.2]; RNA recognition motif [PF16367.7, score=26.9]} {Human: ENSG00000274081, PUF60, poly(U) binding splicing factor 60, [Score=308, Expect=4e-97]; ENSG00000179950, PUF60, poly(U) binding splicing factor 60, [Score=308, Expect=7e-97]} {Mouse: ENSMUSG00000002524, Puf60, poly-U binding splicing factor 60, [Score=310, Expect=2e-97]} {Dmel: FBgn0028577, hfp, half pint, [RH, Score=225, Expect=2e-64]} {Celegans: WBGene00004389, rnp-6, RNP (RRM RNA binding domain) containing, [RH, Score=229, Expect=4e-69]} {Smed: dd_Smed_v6_3853_0_3, dd_Smed_v6_3853_0_3, [Score=350, Expect=6e-114]} {RNA1509_18272, RNA1509_23731} {RNA1310_20367.1, RNA1509_23731} {RNA1509_23731, RNA815_10999} |
| 5. | MligTC455_17045 | 499 | 10.4 | Mlig455_007968 | Neo: - |
0.964 | - | - | 0.964 | - | - | - | Mlig455_007968 {REF} {Length: 1845} {RNA1509_23731, RNA1509_54798} {RNA1310_20367.1, RNA1509_54798} {RNA1509_54798, RNA815_10999} | |
| 6. | MligTC455_42557 | 354 | 7.38 | Mlig455_026024 | Neo: - Age: - |
0.962 | - | - | 0.962 | - | - | - | Mlig455_026024 {REF} {Length: 1890} {TRANSSPLICED} {RNA1509_23566, RNA1509_54428, RNA1509_56722} {RNA1310_23201.2, RNA1509_23566, RNA1509_54428, RNA1509_56722} {RNA1509_23566, RNA1509_54428, RNA1509_56722, RNA815_9453.1} | |
| 7. | MligTC455_46483 | 630 | 13.12 | Mlig455_013942 | Neo: - |
0.961 | - | - | 0.961 | - | - | - | Mlig455_013942 {REF} {Length: 3052} {RNA1509_5335} {RNA1310_5801.1, RNA1509_5335} {RNA1509_5335, RNA815_10251} | |
| 8. | MligTC455_34139 | 1960 | 40.83 | Mlig455_040728 | Neo: - Age: Down-Down-Up |
0.959 | - | - | 0.959 | - | - | - | Mlig455_040728 {REF} {Length: 3800} {RNA1509_17252, RNA1509_32420} {RNA1310_21118, RNA1509_17252, RNA1509_32420} {RNA1509_17252, RNA1509_32420, RNA815_8948} | |
| 9. | MligTC455_23268 | 269 | 5.61 | Mlig455_000614 | Neo: - Age: logFC(26M/2M)=-0.274 |
GBF1 | 0.957 | - | - | - | - | 0.957 | - | Mlig455_000614 {REF} {Length: 7842} {TRANSSPLICED} {Pfam: Sec7 domain [PF01369.22, score=215.2]; Guanine nucleotide exchange factor in Golgi transport N-terminal [PF12783.9, score=75.0]} {Human: ENSG00000107862, GBF1, golgi brefeldin A resistant guanine nucleotide exchange factor 1, [Score=1324, Expect=0.0]} {Mouse: ENSMUSG00000025224, Gbf1, golgi-specific brefeldin A-resistance factor 1, [Score=1318, Expect=0.0]} {Dmel: FBgn0264560, garz, gartenzwerg, [Score=984, Expect=0.0]} {Celegans: WBGene00007703, gbf-1, [Score=827, Expect=0.0]} {Smed: dd_Smed_v6_8011_0_1, dd_Smed_v6_8011_0_1, [Score=790, Expect=0.0]} {RNA1509_19282} {RNA1310_634} {RNA815_524} |
| 10. | MligTC455_48042 | 265 | 5.52 | Mlig455_015290 | Neo: - Age: - |
SQSTM1 | 0.956 | - | - | 0.956 | - | - | - | Mlig455_015290 {REF} {Length: 2622} {Pfam: UBA domain [PF16577.7, score=30.0]; Zinc finger, ZZ type [PF00569.19, score=27.1]; PB1 domain [PF00564.26, score=25.6]} {Human: ENSG00000161011, SQSTM1, sequestosome 1, [RH, Score=98.6, Expect=9e-22]} {Mouse: ENSMUSG00000015837, Sqstm1, sequestosome 1, [RH, Score=107, Expect=7e-25]} {Dmel: FBgn0003231, ref(2)P, refractory to sigma P, [RH, Score=59.7, Expect=2e-09]} {Celegans: WBGene00011737, sqst-1, SeQueSTosome related, [Score=53.1, Expect=3e-07]} {RNA1509_49422, RNA1509_6156} {RNA1310_11564, RNA1509_49422, RNA1509_6156} {RNA1509_49422, RNA1509_6156, RNA815_6596} |
| 11. | MligTC455_18605 | 1372 | 28.59 | Mlig455_030381 | Neo: - Age: logFC(26M/2M)=-0.360 |
0.955 | - | - | 0.955 | - | - | - | Mlig455_030381 {REF} {Length: 846} {Pfam: Family of unknown function (DUF5582) [PF17819.3, score=54.5]} {Mouse: ENSMUSG00000022798, 4930435E12Rik, RIKEN cDNA 4930435E12 gene, [RH, Score=59.3, Expect=4e-11]} {RNA1509_10400, RNA1509_45977} {RNA1310_50669.1, RNA1509_10400, RNA1509_45977} {RNA1509_10400, RNA1509_45977, RNA815_25237} | |
| 12. | MligTC455_33034 | 1100 | 22.92 | Mlig455_068106 | Neo: - Age: - |
0.951 | - | - | - | - | - | 0.951 | Mlig455_068106 {REF} {Length: 5082} {TRANSSPLICED} {RNA1509_40038, RNA1509_44765, RNA1509_57464} {RNA1310_5943.1, RNA1509_44765, RNA1509_57464} {RNA1509_44765, RNA1509_57464, RNA815_10981} | |
| 13. | MligTC455_37386 | 1075 | 22.39 | Mlig455_004178, Mlig455_041121, Mlig455_041175 | Neo: - Age: Down-Up-Up |
TRHR | 0.951 | - | - | 0.951 | - | - | - | Mlig455_004178 {REF} {Length: 1426} {Smed: dd_Smed_v6_16261_0_1, dd_Smed_v6_16261_0_1, [Score=55.1, Expect=2e-09]} {RNA1509_14001} {RNA1310_23895.2, RNA1509_14001} {RNA1509_14001, RNA815_14474.1} Mlig455_041121 {REF} {Length: 2021} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=52.2]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=46.0]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=23.9]} {Human: ENSG00000174417, TRHR, thyrotropin releasing hormone receptor, [Score=64.7, Expect=1e-10]} {Mouse: ENSMUSG00000026237, Nmur1, neuromedin U receptor 1, [Score=68.6, Expect=4e-12]} {Dmel: FBgn0053696, CNMaR, CNMamide Receptor, [Score=64.3, Expect=8e-11]} {Celegans: WBGene00011765, frpr-17, FMRFamide Peptide Receptor family, [RH, Score=79.3, Expect=6e-16]} {Smed: dd_Smed_v6_37609_0_1, dd_Smed_v6_37609_0_1, [Score=145, Expect=5e-40]} Mlig455_041175 {REF} {Length: 1447} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=52.0]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=45.8]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=23.3]} {Human: ENSG00000174417, TRHR, thyrotropin releasing hormone receptor, [Score=64.3, Expect=2e-10]} {Mouse: ENSMUSG00000026237, Nmur1, neuromedin U receptor 1, [Score=68.6, Expect=5e-12]} {Dmel: FBgn0053696, CNMaR, CNMamide Receptor, [Score=63.9, Expect=1e-10]} {Celegans: WBGene00011765, frpr-17, FMRFamide Peptide Receptor family, [RH, Score=79.3, Expect=6e-16]} {Smed: dd_Smed_v6_37609_0_1, dd_Smed_v6_37609_0_1, [Score=145, Expect=9e-40]} |
Berezikov Lab - 2020-2021 © ERIBA