M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28196

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28196 515 10.74 Mlig455_060468

Neo: Int S/G2/M

Age: Up-Down-Down

 PIF1 Mlig455_060468 {REF} {Length: 3356} {Pfam: PIF1-like helicase [PF05970.16, score=124.9]; AAA domain [PF13604.8, score=56.1]; AAA domain [PF13245.8, score=30.7]; Helicase [PF02689.16, score=28.2]; UvrD-like helicase C-terminal domain [PF13538.8, score=26.0]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=129, Expect=1e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=3e-32]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=129, Expect=4e-31]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=2e-32]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=127, Expect=1e-30]} {RNA1509_16132} {RNA1310_143.1} {RNA815_104.1}

Cumulative graph for MligTC455_28196

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.017 3.632 0.70269 1.00000
RegionR2 1.51 3.632 0.05146 0.27121
RegionR3 0.078 3.632 0.91025 1.00000
RegionR4 0.7 3.632 0.36037 0.68321
RegionR5 -0.099 3.632 0.91648 1.00000
RegionR6 -1.249 3.632 0.21782 0.79703
RegionR7 -0.362 3.632 0.75906 1.00000
RegionR8 0.439 3.632 0.76861 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.322 3.632 0.15322 0.89533
RegenerationR2 0.498 3.632 0.39385 0.81092
RegenerationR3 1.043 3.632 0.12585 0.54713
RegenerationR4 0.501 3.632 0.44631 0.84020
RegenerationR5 1.191 3.632 0.06887 0.41258
RegenerationR6 2.483 3.632 0.00153 0.04358
RegenerationBL 2.203 3.632 0.00507 0.06622
RegenerationTP 0.224 3.632 0.82757 1.00000


Genes with expression patterns similar to MligTC455_28196

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28196 515 10.74 Mlig455_060468

Neo: Int S/G2/M

Age: Up-Down-Down

 PIF1 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_060468 {REF} {Length: 3356} {Pfam: PIF1-like helicase [PF05970.16, score=124.9]; AAA domain [PF13604.8, score=56.1]; AAA domain [PF13245.8, score=30.7]; Helicase [PF02689.16, score=28.2]; UvrD-like helicase C-terminal domain [PF13538.8, score=26.0]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=129, Expect=1e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=3e-32]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=129, Expect=4e-31]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=2e-32]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=127, Expect=1e-30]} {RNA1509_16132} {RNA1310_143.1} {RNA815_104.1}
2. MligTC455_28188 1753 36.52 Mlig455_021453, Mlig455_055733

Neo: -

Age: Down-Up-Down

 PIF1 3.877 - - 0.935 0.971 0.979 0.992

Mlig455_021453 {REF} {Length: 14223} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=87.8]; PIF1-like helicase [PF05970.16, score=33.3]} {RNA1509_16132} {RNA1310_143.1} {RNA815_104.1}

Mlig455_055733 {REF} {Length: 12519} {Pfam: PIF1-like helicase [PF05970.16, score=87.7]; AAA domain [PF13604.8, score=46.6]; AAA domain [PF13245.8, score=32.6]; AAA domain [PF13479.8, score=18.5]; Helicase [PF02689.16, score=16.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=71.2, Expect=3e-13]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=72.0, Expect=9e-14]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=72.0, Expect=1e-13]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=72.0, Expect=6e-14]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=73.9, Expect=1e-14]} {RNA1509_16132, RNA1509_34118, RNA1509_35077, RNA1509_4409, RNA1509_45043, RNA1509_5424} {RNA1310_143.1, RNA1509_34118, RNA1509_35077, RNA1509_4409, RNA1509_45043, RNA1509_5424} {RNA1509_34118, RNA1509_35077, RNA1509_4409, RNA1509_45043, RNA1509_5424, RNA815_104.1}
3. MligTC455_28183 877 18.27 Mlig455_029275

Neo: Irradiation

Age: Up-Down-Down

 PIF1 3.842 - - 0.948 0.975 0.987 0.932 Mlig455_029275 {REF} {Length: 11512} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_16132, RNA1509_19556} {RNA1310_143.1, RNA1509_19556} {RNA1509_19556, RNA815_104.1}
4. MligTC455_28187 3330 69.38 Mlig455_028755, Mlig455_042569, Mlig455_060476, Mlig455_063991

Neo: -

Age: -

 PIF1 2.656 - - - 0.808 0.958 0.890

Mlig455_028755 {REF} {Length: 11371} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_46} {RNA1310_143.1} {RNA815_104.1}

Mlig455_042569 {REF} {Length: 3442} {TRANSSPLICED} {Pfam: Helitron helicase-like domain at N-terminus [PF14214.8, score=95.8]} {RNA1509_51272, RNA1509_7957} {RNA1310_363, RNA1509_7957} {RNA1509_7957, RNA815_104.1}

Mlig455_060476 {REF} {Length: 6666} {Pfam: PIF1-like helicase [PF05970.16, score=125.9]; AAA domain [PF13604.8, score=57.0]; AAA domain [PF13245.8, score=31.0]; Helicase [PF02689.16, score=16.8]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=120, Expect=3e-28]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=124, Expect=9e-30]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=119, Expect=3e-28]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=122, Expect=2e-29]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=121, Expect=5e-29]} {RNA1509_11156, RNA1509_16132} {RNA1310_143.1, RNA1509_11156} {RNA1509_11156, RNA815_104.1}

Mlig455_063991 {REF} {Length: 11135} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=2e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_46} {RNA1310_143.1} {RNA815_104.1}
5. MligTC455_28184 2226 46.37 Mlig455_022004, Mlig455_052045

Neo: -

Age: Up-Down-Up

 PIF1 2.654 - - - 0.790 0.954 0.910

Mlig455_022004 {REF} {Length: 11399} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=121.0]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.6]; AAA domain [PF13604.8, score=53.4]; AAA domain [PF13245.8, score=28.9]; Helicase [PF02689.16, score=24.7]; UvrD-like helicase C-terminal domain [PF13538.8, score=24.1]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=4e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=129, Expect=3e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=132, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=6e-30]} {RNA1509_46} {RNA1310_143.1} {RNA815_104.1}

Mlig455_052045 {REF} {Length: 10803} {TRANSSPLICED} {Pfam: PIF1-like helicase [PF05970.16, score=120.8]; Helitron helicase-like domain at N-terminus [PF14214.8, score=94.4]; AAA domain [PF13604.8, score=54.2]; AAA domain [PF13245.8, score=28.8]; Helicase [PF02689.16, score=24.6]; UvrD-like helicase C-terminal domain [PF13538.8, score=23.9]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=130, Expect=3e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=134, Expect=1e-31]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=130, Expect=3e-30]} {Celegans: WBGene00004028, pif-1, ATP-dependent DNA helicase PIF1, [Score=133, Expect=1e-31]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=128, Expect=8e-30]} {RNA1509_29468, RNA1509_46} {RNA1310_143.1, RNA1509_29468, RNA1509_46} {RNA1509_29468, RNA1509_46, RNA815_104.1}
6. MligTC455_44950 7633 159.02 Mlig455_035700, Mlig455_035793

Neo: -

Age: -

 MCEE 1.798 - - 0.822 0.976 - -

Mlig455_035700 {REF} {Length: 1051} {TRANSSPLICED} {Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF13669.8, score=67.4]; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF00903.27, score=32.2]; Glyoxalase-like domain [PF13468.8, score=24.0]} {Human: ENSG00000124370, MCEE, methylmalonyl-CoA epimerase, [RH, Score=187, Expect=2e-60]} {Mouse: ENSMUSG00000033429, Mcee, methylmalonyl CoA epimerase, [RH, Score=188, Expect=6e-61]} {Celegans: WBGene00008415, mce-1, Methylmalonyl-CoA Epimerase; Mitochondrial methylmalonyl-CoA epimerase, [RH, Score=153, Expect=7e-48]} {Smed: dd_Smed_v6_3348_1_2, dd_Smed_v6_3348_1_2, [RH, Score=208, Expect=1e-69]} {RNA1509_2628} {RNA1310_20496.1} {RNA815_15365}

Mlig455_035793 {REF} {Length: 1052} {TRANSSPLICED} {Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF13669.8, score=67.4]; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF00903.27, score=32.2]; Glyoxalase-like domain [PF13468.8, score=24.0]} {Human: ENSG00000124370, MCEE, methylmalonyl-CoA epimerase, [RH, Score=187, Expect=2e-60]} {Mouse: ENSMUSG00000033429, Mcee, methylmalonyl CoA epimerase, [RH, Score=188, Expect=6e-61]} {Celegans: WBGene00008415, mce-1, Methylmalonyl-CoA Epimerase; Mitochondrial methylmalonyl-CoA epimerase, [RH, Score=153, Expect=7e-48]} {Smed: dd_Smed_v6_3348_1_2, dd_Smed_v6_3348_1_2, [RH, Score=208, Expect=1e-69]} {RNA1509_20492, RNA1509_25178, RNA1509_2628, RNA1509_27226} {RNA1310_20496.1, RNA1509_20492, RNA1509_25178, RNA1509_2628, RNA1509_27226} {RNA1509_20492, RNA1509_25178, RNA1509_2628, RNA1509_27226, RNA815_15365}
7. MligTC455_48683 1919 39.98 Mlig455_044713

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.493

 0.969 - - - - 0.969 - Mlig455_044713 {REF} {Length: 782} {TRANSSPLICED} {RNA1509_36425, RNA1509_56281} {RNA1310_47185.1, RNA1509_36425, RNA1509_56281} {RNA1509_36425, RNA1509_56281, RNA815_23397.1}
8. MligTC455_25042 739 15.39 Mlig455_020224

Neo: -

Age: -

 CAPSL 0.965 - - - - 0.965 - Mlig455_020224 {REF} {Length: 1450} {TRANSSPLICED} {Pfam: EF-hand domain [PF13405.8, score=71.1]; EF-hand domain pair [PF13499.8, score=66.4]; EF hand [PF00036.34, score=64.5]; EF-hand domain pair [PF13833.8, score=46.7]; EF hand [PF13202.8, score=44.2]; p25-alpha [PF05517.14, score=21.2]} {Human: ENSG00000152611, CAPSL, calcyphosine like, [RH, Score=260, Expect=8e-88]} {Mouse: ENSMUSG00000039676, Capsl, calcyphosine-like, [RH, Score=267, Expect=1e-90]} {Dmel: FBgn0051345, CG31345, [RH, Score=246, Expect=2e-82]} {Celegans: WBGene00000288, cal-4, CALmodulin related genes, [Score=61.6, Expect=2e-11]} {Smed: dd_Smed_v6_7209_0_1, dd_Smed_v6_7209_0_1, [RH, Score=283, Expect=3e-97]} {RNA1509_22937} {RNA1310_18304.1} {RNA815_12484.1}
9. MligTC455_23442 2483 51.73 Mlig455_001500, Mlig455_001518

Neo: Irradiation

Age: -

Region-enriched R5: 1.368/0.00106

 AC007325.2, PRODH 0.962 - - - 0.962 - -

Mlig455_001500 {REF} {Length: 4884} {Pfam: Proline dehydrogenase [PF01619.20, score=249.9]; HTH DNA binding domain [PF04967.14, score=18.4]} {Human: ENSG00000277196, AC007325.2, proline dehydrogenase 1, mitochondrial, [RH, Score=518, Expect=1e-176]; ENSG00000100033, PRODH, proline dehydrogenase 1, [RH, Score=518, Expect=2e-176]} {Mouse: ENSMUSG00000111321, Prodh, proline dehydrogenase, [RH, Score=511, Expect=6e-174]; ENSMUSG00000003526, Prodh, proline dehydrogenase, [RH, Score=511, Expect=6e-174]} {Dmel: FBgn0003423, slgA, sluggish A, [RH, Score=546, Expect=0.0]} {Celegans: WBGene00007197, B0513.5, Proline dehydrogenase 1, mitochondrial, [RH, Score=519, Expect=4e-177]} {Smed: dd_Smed_v6_7017_0_1, dd_Smed_v6_7017_0_1, [RH, Score=567, Expect=0.0]} {RNA1509_1886} {RNA1310_10174} {RNA815_398}

Mlig455_001518 {REF} {Length: 3271} {Pfam: Proline dehydrogenase [PF01619.20, score=249.8]; Winged helix-turn helix [PF13551.8, score=27.9]; Homeodomain-like domain [PF13565.8, score=25.2]; Helix-turn-helix domain [PF13518.8, score=19.3]; Homeodomain-like domain [PF13384.8, score=18.5]; HTH DNA binding domain [PF04967.14, score=18.4]} {Human: ENSG00000100033, PRODH, proline dehydrogenase 1, [RH, Score=516, Expect=5e-176]; ENSG00000277196, AC007325.2, proline dehydrogenase 1, mitochondrial, [RH, Score=516, Expect=4e-176]} {Mouse: ENSMUSG00000111321, Prodh, proline dehydrogenase, [RH, Score=508, Expect=8e-173]; ENSMUSG00000003526, Prodh, proline dehydrogenase, [RH, Score=508, Expect=8e-173]} {Dmel: FBgn0003423, slgA, sluggish A, [RH, Score=542, Expect=0.0]} {Celegans: WBGene00007197, B0513.5, Proline dehydrogenase 1, mitochondrial, [RH, Score=518, Expect=5e-177]} {Smed: dd_Smed_v6_7017_0_1, dd_Smed_v6_7017_0_1, [RH, Score=565, Expect=0.0]} {RNA1509_1886} {RNA1310_10174} {RNA815_398}
10. MligTC455_28980 279 5.82 Mlig455_044817

Neo: -

Age: logFC(26M/2M)=0.447

 PTPRT 0.954 - - - - 0.954 - Mlig455_044817 {REF} {Length: 10717} {TRANSSPLICED} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=270.2]; Fibronectin type III domain [PF00041.23, score=65.6]; Dual specificity phosphatase, catalytic domain [PF00782.22, score=18.8]} {Human: ENSG00000196090, PTPRT, protein tyrosine phosphatase, receptor type T, [Score=270, Expect=6e-73]} {Mouse: ENSMUSG00000053141, Ptprt, protein tyrosine phosphatase, receptor type, T, [Score=268, Expect=2e-72]; ENSMUSG00000028399, Ptprd, protein tyrosine phosphatase, receptor type, D, [Score=257, Expect=7e-69]} {Dmel: FBgn0000464, Lar, Leukocyte-antigen-related-like, [Score=207, Expect=1e-53]} {Celegans: WBGene00004215, ptp-3, Tyrosine-protein phosphatase Lar-like, [Score=169, Expect=1e-41]} {Smed: dd_Smed_v6_10176_0_1, dd_Smed_v6_10176_0_1, [Score=201, Expect=8e-52]} {RNA1509_2576} {RNA1310_671.1, RNA1509_2576} {RNA1509_2576, RNA815_239}
11. MligTC455_17351 766 15.96 Mlig455_009441

Neo: -

Age: -

Region-enriched R2: 2.466/0.00083
Region-enriched R4: 1.757/0.02374

 USH2A 0.952 - - - 0.952 - - Mlig455_009441 {REF} {Length: 3984} {Pfam: Fibronectin type III domain [PF00041.23, score=76.6]; Neuron-derived neurotrophic factor [PF10179.11, score=24.4]; Fibronectin type III domain [PF16893.7, score=23.7]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=22.6]; HEAT repeats [PF13646.8, score=22.2]} {Human: ENSG00000042781, USH2A, usherin, [Score=94.7, Expect=7e-19]} {Mouse: ENSMUSG00000026609, Ush2a, usherin, [Score=77.0, Expect=1e-13]} {Dmel: FBgn0259735, CG42389, [Score=59.3, Expect=2e-08]} {Celegans: WBGene00010558, ptp-4, Tyrosine-protein phosphatase 4, [Score=51.2, Expect=4e-06]} {Smed: dd_Smed_v6_15017_0_1, dd_Smed_v6_15017_0_1, [RH, Score=411, Expect=8e-129]} {RNA1509_13146, RNA1509_35474, RNA1509_50831} {RNA1310_2905.1, RNA1509_13146, RNA1509_35474, RNA1509_50831} {RNA1509_13146, RNA1509_35474, RNA1509_50831, RNA815_2595.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA