Data search
Results for MligTC455_28292
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_28292 | 1893 | 39.43 | Mlig455_018004 | Neo: - Age: Down-Up-Down |
Mlig455_018004 {REF} {Length: 1040} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_9050} {RNA1310_21372.2} {RNA815_15381} |
Cumulative graph for MligTC455_28292
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.745 | 5.454 | 0.02978 | 0.44464 | |
| RegionR2 | 0.495 | 5.454 | 0.16964 | 0.51497 | |
| RegionR3 | 0.69 | 5.454 | 0.01697 | 0.21358 | |
| RegionR4 | 0.345 | 5.454 | 0.32152 | 0.63847 | |
| RegionR5 | -0.067 | 5.454 | 0.81988 | 1.00000 | |
| RegionR6 | 0.336 | 5.454 | 0.26931 | 0.85816 | |
| RegionR7 | 0.074 | 5.454 | 0.82892 | 1.00000 | |
| RegionR8 | -0.129 | 5.454 | 0.74941 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -0.001 | 5.454 | 0.99884 | 1.00000 | |
| RegenerationR2 | -0.101 | 5.454 | 0.76374 | 0.97772 | |
| RegenerationR3 | -0.615 | 5.454 | 0.08497 | 0.47583 | |
| RegenerationR4 | -0.261 | 5.454 | 0.48187 | 0.85976 | |
| RegenerationR5 | 0.23 | 5.454 | 0.51577 | 0.86715 | |
| RegenerationR6 | -0.537 | 5.454 | 0.14446 | 0.46575 | |
| RegenerationBL | -0.181 | 5.454 | 0.63196 | 0.97280 | |
| RegenerationTP | 0.541 | 5.454 | 0.16219 | 0.59156 |
Genes with expression patterns similar to MligTC455_28292
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_28292 | 1893 | 39.43 | Mlig455_018004 | Neo: - Age: Down-Up-Down |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_018004 {REF} {Length: 1040} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_9050} {RNA1310_21372.2} {RNA815_15381} | |
| 2. | MligTC455_28299 | 2270 | 47.29 | Mlig455_059761 | Neo: - Age: logFC(26M/2M)=0.708 |
4.767 | 0.994 | 0.872 | 0.934 | 0.990 | 0.977 | - | Mlig455_059761 {REF} {Length: 1040} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_9050} {RNA1310_21372.2, RNA1509_9050} {RNA1509_9050, RNA815_15381} | |
| 3. | MligTC455_28298 | 2452 | 51.09 | Mlig455_027052, Mlig455_033234 | Neo: - Age: - |
3.74 | 0.991 | 0.986 | 0.775 | 0.988 | - | - | Mlig455_027052 {REF} {Length: 1606} {NoTransDecoderORF} {RNA1509_13847} {RNA1310_10847.1} {RNA815_5428.1} Mlig455_033234 {REF} {Length: 3912} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_13847, RNA1509_36354} {RNA1310_14467, RNA1509_36354} {RNA1509_36354, RNA815_5428.1} |
|
| 4. | MligTC455_30237 | 2781 | 57.93 | Mlig455_017256, Mlig455_023054, Mlig455_048450 | Neo: - Age: Up-Down-Down |
2.843 | 0.975 | - | - | 0.954 | 0.914 | - | Mlig455_017256 {REF} {Length: 107} {NoTransDecoderORF} Mlig455_023054 {REF} {Length: 914} {NoTransDecoderORF} {RNA1509_13847} {RNA1310_10847.1} {RNA815_5428.3} Mlig455_048450 {REF} {Length: 3910} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_13847} {RNA1310_14467} {RNA815_5428.1} |
|
| 5. | MligTC455_43049 | 1806 | 37.62 | Mlig455_062571 | Neo: - Age: - |
ACAN | 1.803 | - | - | - | 0.985 | 0.818 | - | Mlig455_062571 {REF} {Length: 5543} {TRANSSPLICED} {Human: ENSG00000157766, ACAN, aggrecan, [RH, Score=120, Expect=2e-26]} {Mouse: ENSMUSG00000030607, Acan, aggrecan, [Score=58.2, Expect=9e-08]} {Celegans: WBGene00013762, Y113G7B.12, [Score=57.0, Expect=1e-07]} {RNA1509_5653} {RNA1310_12100} {RNA815_6156.1} |
| 6. | MligTC455_25676 | 670 | 13.97 | Mlig455_004461 | Neo: - |
COL24A1 | 1.72 | - | 0.768 | - | - | - | 0.952 | Mlig455_004461 {REF} {Length: 4125} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=458.3]; Fibrillar collagen C-terminal domain [PF01410.20, score=140.9]} {Human: ENSG00000171502, COL24A1, collagen type XXIV alpha 1 chain, [Score=354, Expect=1e-100]} {Mouse: ENSMUSG00000029661, Col1a2, collagen, type I, alpha 2, [Score=406, Expect=6e-120]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [Score=347, Expect=2e-98]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [Score=301, Expect=6e-84]} {Smed: dd_Smed_v6_8075_0_1, dd_Smed_v6_8075_0_1, [Score=464, Expect=2e-140]} {RNA1509_6841} {RNA1310_1385.1} {RNA815_7264} |
| 7. | MligTC455_28146 | 72 | 1.51 | Mlig455_006794 | Neo: - Age: - |
0.953 | - | - | - | - | 0.953 | - | Mlig455_006794 {REF} {Length: 1903} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1} | |
| 8. | MligTC455_22074 | 240 | 4.99 | Mlig455_023121 | Neo: - Age: - |
SIAH2 | 0.951 | - | - | - | - | 0.951 | - | Mlig455_023121 {REF} {Length: 4938} {TRANSSPLICED} {Pfam: Seven in absentia protein family [PF03145.18, score=258.3]} {Human: ENSG00000181788, SIAH2, siah E3 ubiquitin protein ligase 2, [RH, Score=409, Expect=1e-142]} {Mouse: ENSMUSG00000040749, Siah1b, siah E3 ubiquitin protein ligase 1B, [RH, Score=419, Expect=4e-147]; ENSMUSG00000036432, Siah2, siah E3 ubiquitin protein ligase 2, [RH, Score=410, Expect=6e-143]} {Dmel: FBgn0003410, sina, seven in absentia, [RH, Score=400, Expect=3e-139]} {Celegans: WBGene00021369, siah-1, E3 ubiquitin-protein ligase siah-1, [RH, Score=383, Expect=2e-131]} {Smed: dd_Smed_v6_6226_0_1, dd_Smed_v6_6226_0_1, [RH, Score=438, Expect=2e-153]} {RNA1509_19105} {RNA1310_12118} {RNA815_7413.1} |
| 9. | MligTC455_28133 | 78 | 1.62 | Mlig455_047994 | Neo: - Age: - |
0.95 | - | - | - | - | 0.950 | - | Mlig455_047994 {REF} {Length: 1743} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_15620} {RNA815_11419.1} |
Berezikov Lab - 2020-2021 © ERIBA