TomoSeq data search

Data search

Results for MligTC455_28459

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28459

1199

24.98

Mlig455_022464

Neo: -

Age: logFC(26M/2M)=-0.694

Region-enriched R4: 1.862/0.00004
Region-enriched R5: 1.202/0.00160

Mlig455_022464 {REF} {Length: 1471} {NoTransDecoderORF} {RNA1509_51870} {RNA1310_47270.1} {RNA815_29395}

Cumulative graph for MligTC455_28459

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.587	4.738	0.05335	0.54068
RegionR2	-0.242	4.738	0.59128	0.94454
RegionR3	0.214	4.738	0.55310	1.00000
RegionR4	1.862	4.738	0.00000	0.00004
RegionR5	1.202	4.738	0.00010	0.00160
RegionR6	0.6	4.738	0.08945	0.55056
RegionR7	0.427	4.738	0.33100	0.96592
RegionR8	-1.475	4.738	0.04066	0.39515

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	2.407	4.738	0.14664	0.88799
RegenerationR2	0.056	4.738	0.85464	1.00000
RegenerationR3	0.122	4.738	0.71628	0.95402
RegenerationR4	-0.428	4.738	0.20710	0.65409
RegenerationR5	-0.027	4.738	0.92608	1.00000
RegenerationR6	0.478	4.738	0.14321	0.46360
RegenerationBL	0.976	4.738	0.01402	0.12335
RegenerationTP	0.131	4.738	0.80304	1.00000

Genes with expression patterns similar to MligTC455_28459

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28459	1199	24.98	Mlig455_022464	Neo: - Age: logFC(26M/2M)=-0.694 Region-enriched R4: 1.862/0.00004 Region-enriched R5: 1.202/0.00160		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_022464 {REF} {Length: 1471} {NoTransDecoderORF} {RNA1509_51870} {RNA1310_47270.1} {RNA815_29395}
2.	MligTC455_28458	1235	25.73	Mlig455_022376	Neo: - Age: Down-Down-Up, logFC(26M/2M)=2.894 Region-enriched R4: 1.800/0.00006 Region-enriched R5: 1.190/0.00140	CHD3	5.967	0.985	0.999	1.000	0.998	0.988	0.997	Mlig455_022376 {REF} {Length: 8563} {Pfam: CHDCT2 (NUC038) domain [PF08074.13, score=236.8]; SNF2-related domain [PF00176.25, score=208.8]; Domain of Unknown Function (DUF1086) [PF06461.13, score=160.0]; Helicase conserved C-terminal domain [PF00271.33, score=74.7]; Domain of Unknown Function (DUF1087) [PF06465.15, score=70.2]; PHD-finger [PF00628.31, score=62.7]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=56.9]; Type III restriction enzyme, res subunit [PF04851.17, score=31.8]; CHDNT (NUC034) domain [PF08073.14, score=30.0]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=28.2]; PHD-finger [PF13831.8, score=22.1]} {Human: ENSG00000170004, CHD3, chromodomain helicase DNA binding protein 3, [RH, Score=1751, Expect=0.0]; ENSG00000116254, CHD5, chromodomain helicase DNA binding protein 5, [RH, Score=1730, Expect=0.0]; ENSG00000111642, CHD4, chromodomain helicase DNA binding protein 4, [RH, Score=1730, Expect=0.0]} {Mouse: ENSMUSG00000005045, Chd5, chromodomain helicase DNA binding protein 5, [RH, Score=1755, Expect=0.0]; ENSMUSG00000018474, Chd3, chromodomain helicase DNA binding protein 3, [RH, Score=1727, Expect=0.0]} {Dmel: FBgn0262519, Mi-2, [RH, Score=1763, Expect=0.0]} {Celegans: WBGene00000482, chd-3, Chromodomain-helicase-DNA-binding protein 3 homolog, [RH, Score=1548, Expect=0.0]} {Smed: dd_Smed_v6_2331_0_1, dd_Smed_v6_2331_0_1, [RH, Score=1723, Expect=0.0]} {RNA1509_4759} {RNA1310_3082.1} {RNA815_1229}
3.	MligTC455_28460	1288	26.83	Mlig455_069869	Neo: Int S/G2/M Age: logFC(26M/2M)=-0.231 Region-enriched R4: 1.755/0.00011 Region-enriched R5: 1.275/0.00056	CHD4	5.895	0.980	0.982	0.957	0.995	0.990	0.991	Mlig455_069869 {REF} {Length: 7096} {TRANSSPLICED} {Pfam: CHDCT2 (NUC038) domain [PF08074.13, score=236.8]; SNF2-related domain [PF00176.25, score=208.8]; Domain of Unknown Function (DUF1086) [PF06461.13, score=159.6]; Helicase conserved C-terminal domain [PF00271.33, score=74.7]; Domain of Unknown Function (DUF1087) [PF06465.15, score=70.1]; PHD-finger [PF00628.31, score=62.6]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=56.8]; Type III restriction enzyme, res subunit [PF04851.17, score=34.6]; CHDNT (NUC034) domain [PF08073.14, score=30.0]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=28.2]; PHD-finger [PF13831.8, score=22.0]} {Human: ENSG00000111642, CHD4, chromodomain helicase DNA binding protein 4, [RH, Score=1731, Expect=0.0]; ENSG00000116254, CHD5, chromodomain helicase DNA binding protein 5, [RH, Score=1727, Expect=0.0]; ENSG00000170004, CHD3, chromodomain helicase DNA binding protein 3, [RH, Score=1726, Expect=0.0]} {Mouse: ENSMUSG00000018474, Chd3, chromodomain helicase DNA binding protein 3, [RH, Score=1734, Expect=0.0]; ENSMUSG00000063870, Chd4, chromodomain helicase DNA binding protein 4, [RH, Score=1726, Expect=0.0]} {Dmel: FBgn0262519, Mi-2, [RH, Score=1761, Expect=0.0]} {Celegans: WBGene00000482, chd-3, Chromodomain-helicase-DNA-binding protein 3 homolog, [RH, Score=1551, Expect=0.0]} {Smed: dd_Smed_v6_2331_0_1, dd_Smed_v6_2331_0_1, [RH, Score=1723, Expect=0.0]} {RNA1509_26970, RNA1509_34830, RNA1509_4759, RNA1509_51016, RNA1509_51870} {RNA1310_3082.1, RNA1509_26970, RNA1509_34830, RNA1509_51016, RNA1509_51870} {RNA1509_26970, RNA1509_34830, RNA1509_51016, RNA1509_51870, RNA815_1229}
4.	MligTC455_39193	2183	45.47	Mlig455_062607	Neo: Int S/G2/M Age: logFC(26M/2M)=0.251 Region-enriched R5: 1.083/0.00008	SND1	2.431	-	-	0.763	-	0.718	0.950	Mlig455_062607 {REF} {Length: 6180} {Pfam: Staphylococcal nuclease homologue [PF00565.19, score=182.0]; Tudor domain [PF00567.26, score=37.9]} {Human: ENSG00000197157, SND1, staphylococcal nuclease and tudor domain containing 1, [RH, Score=698, Expect=0.0]} {Mouse: ENSMUSG00000001424, Snd1, staphylococcal nuclease and tudor domain containing 1, [RH, Score=696, Expect=0.0]} {Dmel: FBgn0035121, Tudor-SN, Tudor staphylococcal nuclease, [RH, Score=602, Expect=0.0]} {Celegans: WBGene00006626, tsn-1, Tudor Staphylococcal Nuclease homolog, [RH, Score=607, Expect=0.0]} {Smed: dd_Smed_v6_906_0_1, dd_Smed_v6_906_0_1, [RH, Score=698, Expect=0.0]} {RNA1509_16100, RNA1509_16974, RNA1509_18184, RNA1509_22268, RNA1509_3189, RNA1509_38948, RNA1509_54714} {RNA1310_6353, RNA1509_16100, RNA1509_16974, RNA1509_18184, RNA1509_22268, RNA1509_3189, RNA1509_38948, RNA1509_54714} {RNA1509_16100, RNA1509_16974, RNA1509_18184, RNA1509_22268, RNA1509_3189, RNA1509_38948, RNA1509_54714, RNA815_2807}
5.	MligTC455_22790	8950	186.46	Mlig455_009210	Neo: Int S/G2/M Age: logFC(26M/2M)=0.204	HNRNPK	1.771	-	-	-	0.954	0.817	-	Mlig455_009210 {REF} {Length: 1967} {TRANSSPLICED} {Pfam: KH domain [PF00013.31, score=98.4]; KH domain [PF07650.19, score=46.7]; KH domain [PF13083.8, score=20.8]} {Human: ENSG00000165119, HNRNPK, heterogeneous nuclear ribonucleoprotein K, [RH, Score=161, Expect=6e-46]} {Mouse: ENSMUSG00000021546, Hnrnpk, heterogeneous nuclear ribonucleoprotein K, [RH, Score=161, Expect=5e-47]} {Dmel: FBgn0267791, HnRNP-K, Heterogeneous nuclear ribonucleoprotein K, [RH, Score=153, Expect=2e-42]} {Celegans: WBGene00017816, hrpk-1, Heterogeneous nuclear RibonucleoProtein (HnRNP) K homolog, [Score=154, Expect=8e-44]} {Smed: dd_Smed_v6_1998_0_1, dd_Smed_v6_1998_0_1, [RH, Score=163, Expect=3e-46]} {RNA1509_10759, RNA1509_1170} {RNA1310_6557.1, RNA1509_10759, RNA1509_1170} {RNA1509_10759, RNA1509_1170, RNA815_5052.1}
6.	MligTC455_22791	8103	168.82	Mlig455_037099	Neo: Int S/G2/M Age: Down-Up-Down	HNRNPK	1.757	-	-	-	0.955	0.802	-	Mlig455_037099 {REF} {Length: 1961} {TRANSSPLICED} {Pfam: KH domain [PF00013.31, score=155.3]; KH domain [PF07650.19, score=61.7]; KH domain [PF13083.8, score=20.5]} {Human: ENSG00000165119, HNRNPK, heterogeneous nuclear ribonucleoprotein K, [RH, Score=161, Expect=2e-45]} {Mouse: ENSMUSG00000021546, Hnrnpk, heterogeneous nuclear ribonucleoprotein K, [RH, Score=162, Expect=1e-46]} {Dmel: FBgn0267791, HnRNP-K, Heterogeneous nuclear ribonucleoprotein K, [RH, Score=151, Expect=3e-41]} {Celegans: WBGene00017816, hrpk-1, Heterogeneous nuclear RibonucleoProtein (HnRNP) K homolog, [RH, Score=213, Expect=1e-65]} {Smed: dd_Smed_v6_1569_0_1, dd_Smed_v6_1569_0_1, [RH, Score=206, Expect=3e-63]} {RNA1509_10759} {RNA1310_6557.1} {RNA815_5052.1}
7.	MligTC455_43046	1867	38.9	Mlig455_016895, Mlig455_017001	Neo: - Age: - Region-enriched R5: 1.031/0.00546		0.967	-	-	-	-	0.967	-	Mlig455_016895 {REF} {Length: 3557} {TRANSSPLICED} {RNA1509_42180} {RNA1310_32828, RNA1509_42180} {RNA1509_42180, RNA815_11330} Mlig455_017001 {REF} {Length: 2032} {TRANSSPLICED} {RNA1509_42180} {RNA1310_32828} {RNA815_11330}
8.	MligTC455_38872	1134	23.62	Mlig455_055579	Neo: - Age: logFC(26M/2M)=0.371 Region-enriched R5: 1.021/0.00724	LEMD3	0.955	-	-	-	0.955	-	-	Mlig455_055579 {REF} {Length: 4956} {Pfam: LEM domain [PF03020.17, score=34.4]} {Human: ENSG00000174106, LEMD3, LEM domain containing 3, [RH, Score=74.7, Expect=3e-13]} {Mouse: ENSMUSG00000048661, Lemd3, LEM domain containing 3, [RH, Score=76.6, Expect=5e-14]} {Dmel: FBgn0034962, MAN1, [RH, Score=60.5, Expect=3e-09]} {Smed: dd_Smed_v6_3626_0_1, dd_Smed_v6_3626_0_1, [RH, Score=77.0, Expect=2e-14]} {RNA1509_7639} {RNA1310_3531, RNA1509_7639} {RNA1509_7639, RNA815_1027.1}
9.	MligTC455_47554	346	7.2	Mlig455_050102	Neo: - Age: -		0.953	-	-	-	0.953	-	-	Mlig455_050102 {REF} {Length: 1552} {TRANSSPLICED} {RNA1509_41028} {RNA1310_33942.1} {RNA815_15423}
10.	MligTC455_47555	709	14.77	Mlig455_050057, Mlig455_054012	Neo: - Age: -		0.953	-	-	-	0.953	-	-	Mlig455_050057 {REF} {Length: 2361} {TRANSSPLICED} {RNA1509_10598, RNA1509_41028} {RNA1310_33942.1, RNA1509_10598} {RNA1509_10598, RNA815_15423} Mlig455_054012 {REF} {Length: 1947} {TRANSSPLICED} {RNA1509_41028} {RNA1310_33942.1, RNA1509_41028} {RNA1509_41028, RNA815_15423}

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