M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_43046

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_43046 1867 38.90 Mlig455_016895, Mlig455_017001

Neo: -

Age: -

Region-enriched R5: 1.031/0.00546

Mlig455_016895 {REF} {Length: 3557} {TRANSSPLICED} {RNA1509_42180} {RNA1310_32828, RNA1509_42180} {RNA1509_42180, RNA815_11330}

Mlig455_017001 {REF} {Length: 2032} {TRANSSPLICED} {RNA1509_42180} {RNA1310_32828} {RNA815_11330}

Cumulative graph for MligTC455_43046

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.409 5.478 0.04002 0.48697
RegionR2 0.536 5.478 0.18033 0.53068
RegionR3 0.077 5.478 0.82153 1.00000
RegionR4 0.79 5.478 0.03921 0.16338
RegionR5 1.031 5.478 0.00045 0.00546
RegionR6 -0.015 5.478 0.97143 1.00000
RegionR7 0.169 5.478 0.67643 1.00000
RegionR8 -0.178 5.478 0.74201 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.123 5.478 0.52083 1.00000
RegenerationR2 -0.169 5.478 0.60677 0.91832
RegenerationR3 0.309 5.478 0.39508 0.79942
RegenerationR4 -0.125 5.478 0.72976 0.96440
RegenerationR5 0.248 5.478 0.45097 0.83106
RegenerationR6 1.16 5.478 0.00100 0.03454
RegenerationBL 1.096 5.478 0.00224 0.03901
RegenerationTP 0.093 5.478 0.83271 1.00000


Genes with expression patterns similar to MligTC455_43046

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_43046 1867 38.9 Mlig455_016895, Mlig455_017001

Neo: -

Age: -

Region-enriched R5: 1.031/0.00546

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_016895 {REF} {Length: 3557} {TRANSSPLICED} {RNA1509_42180} {RNA1310_32828, RNA1509_42180} {RNA1509_42180, RNA815_11330}

Mlig455_017001 {REF} {Length: 2032} {TRANSSPLICED} {RNA1509_42180} {RNA1310_32828} {RNA815_11330}
2. MligTC455_42349 744 15.51 Mlig455_010690, Mlig455_010789

Neo: -

Age: -

 SPOP 2.579 - - - 0.797 0.960 0.822

Mlig455_010690 {REF} {Length: 4806} {TRANSSPLICED} {Pfam: BTB/POZ domain [PF00651.33, score=95.7]; MATH domain [PF00917.28, score=33.8]} {Human: ENSG00000121067, SPOP, speckle type BTB/POZ protein, [RH, Score=514, Expect=0.0]; ENSG00000144228, SPOPL, speckle type BTB/POZ protein like, [RH, Score=512, Expect=4e-180]} {Mouse: ENSMUSG00000057522, Spop, speckle-type POZ protein, [RH, Score=514, Expect=0.0]; ENSMUSG00000026771, Spopl, speckle-type POZ protein-like, [RH, Score=508, Expect=2e-178]} {Dmel: FBgn0264493, rdx, roadkill, [RH, Score=523, Expect=0.0]} {Celegans: WBGene00011815, bath-43, BTB and MATH domain-containing protein 43, [RH, Score=489, Expect=2e-170]} {Smed: dd_Smed_v6_10149_0_1, dd_Smed_v6_10149_0_1, [RH, Score=351, Expect=3e-118]} {RNA1509_49062, RNA1509_9921} {RNA1310_14640.1, RNA1509_49062} {RNA1509_49062, RNA815_13360}

Mlig455_010789 {REF} {Length: 5787} {TRANSSPLICED} {Pfam: BTB/POZ domain [PF00651.33, score=95.7]; MATH domain [PF00917.28, score=33.8]} {Human: ENSG00000121067, SPOP, speckle type BTB/POZ protein, [RH, Score=514, Expect=0.0]; ENSG00000144228, SPOPL, speckle type BTB/POZ protein like, [RH, Score=512, Expect=4e-180]} {Mouse: ENSMUSG00000057522, Spop, speckle-type POZ protein, [RH, Score=514, Expect=0.0]; ENSMUSG00000026771, Spopl, speckle-type POZ protein-like, [RH, Score=508, Expect=2e-178]} {Dmel: FBgn0264493, rdx, roadkill, [RH, Score=523, Expect=0.0]} {Celegans: WBGene00011815, bath-43, BTB and MATH domain-containing protein 43, [RH, Score=489, Expect=2e-170]} {Smed: dd_Smed_v6_10149_0_1, dd_Smed_v6_10149_0_1, [RH, Score=351, Expect=3e-118]} {RNA1509_9921} {RNA1310_14640.1} {RNA815_13360}
3. MligTC455_28460 1288 26.83 Mlig455_069869

Neo: Int S/G2/M

Age: logFC(26M/2M)=-0.231

Region-enriched R4: 1.755/0.00011
Region-enriched R5: 1.275/0.00056

 CHD4 1.663 - - - - 0.960 0.703 Mlig455_069869 {REF} {Length: 7096} {TRANSSPLICED} {Pfam: CHDCT2 (NUC038) domain [PF08074.13, score=236.8]; SNF2-related domain [PF00176.25, score=208.8]; Domain of Unknown Function (DUF1086) [PF06461.13, score=159.6]; Helicase conserved C-terminal domain [PF00271.33, score=74.7]; Domain of Unknown Function (DUF1087) [PF06465.15, score=70.1]; PHD-finger [PF00628.31, score=62.6]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=56.8]; Type III restriction enzyme, res subunit [PF04851.17, score=34.6]; CHDNT (NUC034) domain [PF08073.14, score=30.0]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=28.2]; PHD-finger [PF13831.8, score=22.0]} {Human: ENSG00000111642, CHD4, chromodomain helicase DNA binding protein 4, [RH, Score=1731, Expect=0.0]; ENSG00000116254, CHD5, chromodomain helicase DNA binding protein 5, [RH, Score=1727, Expect=0.0]; ENSG00000170004, CHD3, chromodomain helicase DNA binding protein 3, [RH, Score=1726, Expect=0.0]} {Mouse: ENSMUSG00000018474, Chd3, chromodomain helicase DNA binding protein 3, [RH, Score=1734, Expect=0.0]; ENSMUSG00000063870, Chd4, chromodomain helicase DNA binding protein 4, [RH, Score=1726, Expect=0.0]} {Dmel: FBgn0262519, Mi-2, [RH, Score=1761, Expect=0.0]} {Celegans: WBGene00000482, chd-3, Chromodomain-helicase-DNA-binding protein 3 homolog, [RH, Score=1551, Expect=0.0]} {Smed: dd_Smed_v6_2331_0_1, dd_Smed_v6_2331_0_1, [RH, Score=1723, Expect=0.0]} {RNA1509_26970, RNA1509_34830, RNA1509_4759, RNA1509_51016, RNA1509_51870} {RNA1310_3082.1, RNA1509_26970, RNA1509_34830, RNA1509_51016, RNA1509_51870} {RNA1509_26970, RNA1509_34830, RNA1509_51016, RNA1509_51870, RNA815_1229}
4. MligTC455_28459 1199 24.98 Mlig455_022464

Neo: -

Age: logFC(26M/2M)=-0.694

Region-enriched R4: 1.862/0.00004
Region-enriched R5: 1.202/0.00160

 0.967 - - - - 0.967 - Mlig455_022464 {REF} {Length: 1471} {NoTransDecoderORF} {RNA1509_51870} {RNA1310_47270.1} {RNA815_29395}
5. MligTC455_28458 1235 25.73 Mlig455_022376

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=2.894

Region-enriched R4: 1.800/0.00006
Region-enriched R5: 1.190/0.00140

 CHD3 0.96 - - - - 0.960 - Mlig455_022376 {REF} {Length: 8563} {Pfam: CHDCT2 (NUC038) domain [PF08074.13, score=236.8]; SNF2-related domain [PF00176.25, score=208.8]; Domain of Unknown Function (DUF1086) [PF06461.13, score=160.0]; Helicase conserved C-terminal domain [PF00271.33, score=74.7]; Domain of Unknown Function (DUF1087) [PF06465.15, score=70.2]; PHD-finger [PF00628.31, score=62.7]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=56.9]; Type III restriction enzyme, res subunit [PF04851.17, score=31.8]; CHDNT (NUC034) domain [PF08073.14, score=30.0]; Class II histone deacetylase complex subunits 2 and 3 [PF11496.10, score=28.2]; PHD-finger [PF13831.8, score=22.1]} {Human: ENSG00000170004, CHD3, chromodomain helicase DNA binding protein 3, [RH, Score=1751, Expect=0.0]; ENSG00000116254, CHD5, chromodomain helicase DNA binding protein 5, [RH, Score=1730, Expect=0.0]; ENSG00000111642, CHD4, chromodomain helicase DNA binding protein 4, [RH, Score=1730, Expect=0.0]} {Mouse: ENSMUSG00000005045, Chd5, chromodomain helicase DNA binding protein 5, [RH, Score=1755, Expect=0.0]; ENSMUSG00000018474, Chd3, chromodomain helicase DNA binding protein 3, [RH, Score=1727, Expect=0.0]} {Dmel: FBgn0262519, Mi-2, [RH, Score=1763, Expect=0.0]} {Celegans: WBGene00000482, chd-3, Chromodomain-helicase-DNA-binding protein 3 homolog, [RH, Score=1548, Expect=0.0]} {Smed: dd_Smed_v6_2331_0_1, dd_Smed_v6_2331_0_1, [RH, Score=1723, Expect=0.0]} {RNA1509_4759} {RNA1310_3082.1} {RNA815_1229}
6. MligTC455_09811 50 1.04 Mlig455_018583

Neo: -

Age: -

 LRP11 0.953 - - - 0.953 - - Mlig455_018583 {REF} {Length: 3580} {Pfam: MANEC domain [PF07502.16, score=61.3]; Low-density lipoprotein receptor domain class A [PF00057.20, score=24.4]} {Human: ENSG00000120256, LRP11, LDL receptor related protein 11, [Score=55.1, Expect=3e-07]} {Mouse: ENSMUSG00000019796, Lrp11, low density lipoprotein receptor-related protein 11, [Score=58.5, Expect=1e-08]; ENSMUSG00000116377, Lrp11, low density lipoprotein receptor-related protein 11, [Score=58.5, Expect=1e-08]} {Dmel: FBgn0027550, CG6495, [RH, Score=92.8, Expect=2e-19]} {Smed: dd_Smed_v6_10934_0_1, dd_Smed_v6_10934_0_1, [Score=107, Expect=2e-24]} {RNA1509_12808, RNA1509_37717, RNA1509_58892} {RNA1310_11889, RNA1509_37717, RNA1509_58892} {RNA1509_37717, RNA1509_58892, RNA815_19283}
7. MligTC455_26694 1228 25.58 Mlig455_028310

Neo: -

Age: -

 RUVBL2 0.951 - - - - 0.951 - Mlig455_028310 {REF} {Length: 2045} {Pfam: TIP49 P-loop domain [PF06068.15, score=542.3]; TIP49 AAA-lid domain [PF17856.3, score=98.4]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=33.7]; AAA ATPase domain [PF13191.8, score=28.3]; DnaB-like helicase C terminal domain [PF03796.17, score=26.9]; AAA domain (dynein-related subfamily) [PF07728.16, score=25.8]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=25.2]; AAA domain [PF13245.8, score=24.4]; AAA domain [PF13401.8, score=22.9]; Sigma-54 interaction domain [PF00158.28, score=21.9]; Magnesium chelatase, subunit ChlI [PF01078.23, score=21.0]; AAA domain [PF13481.8, score=20.9]} {Human: ENSG00000183207, RUVBL2, RuvB like AAA ATPase 2, [RH, Score=808, Expect=0.0]} {Mouse: ENSMUSG00000003868, Ruvbl2, RuvB-like protein 2, [RH, Score=806, Expect=0.0]} {Dmel: FBgn0040075, rept, reptin, [RH, Score=748, Expect=0.0]} {Celegans: WBGene00020687, ruvb-2, RuvB-like 2, [RH, Score=565, Expect=0.0]} {Smed: dd_Smed_v6_2547_0_1, dd_Smed_v6_2547_0_1, [RH, Score=740, Expect=0.0]} {RNA1509_12047} {RNA1310_13037} {RNA815_5004.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA