TomoSeq data search

Data search

Results for MligTC455_28805

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28805

26

0.54

Mlig455_006382, Mlig455_011945

Neo: -

Age: Down-Down-Up

CRB2

Mlig455_006382 {REF} {Length: 1183} {TRANSSPLICED} {Pfam: Integrase zinc binding domain [PF17921.3, score=20.2]} {RNA1509_18097} {RNA1310_495.1} {RNA815_13065}

Mlig455_011945 {REF} {Length: 4613} {Pfam: EGF-like domain [PF00008.29, score=69.1]; Human growth factor-like EGF [PF12661.9, score=31.1]; EGF-like domain [PF07974.15, score=30.1]} {Human: ENSG00000148204, CRB2, crumbs 2, cell polarity complex component, [Score=122, Expect=4e-28]; ENSG00000134250, NOTCH2, notch 2, [Score=121, Expect=1e-27]; ENSG00000148400, NOTCH1, notch 1, [Score=120, Expect=2e-27]; ENSG00000275555, DLL1, delta like canonical Notch ligand 1, [Score=117, Expect=2e-26]; ENSG00000198719, DLL1, delta like canonical Notch ligand 1, [Score=117, Expect=2e-26]} {Mouse: ENSMUSG00000028369, Svep1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=125, Expect=6e-29]; ENSMUSG00000027878, Notch2, notch 2, [Score=122, Expect=3e-28]; ENSMUSG00000026923, Notch1, notch 1, [Score=121, Expect=9e-28]} {Dmel: FBgn0259685, crb, crumbs, [Score=135, Expect=2e-32]} {Celegans: WBGene00000792, crb-1, Drosophila CRumBs homolog, [Score=108, Expect=6e-24]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=113, Expect=1e-25]} {RNA1509_35846} {RNA1310_9600.1} {RNA815_3985.1}

Cumulative graph for MligTC455_28805

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.684	1.14	0.99956	1.00000
RegionR2	1.106	1.14	0.64445	0.98140
RegionR3	2.182	1.14	0.15146	0.65891
RegionR4	0.251	1.14	0.65552	0.95638
RegionR5	0.884	1.14	0.45689	0.81924
RegionR6	0.415	1.14	0.65403	1.00000
RegionR7	-1.133	1.14	0.99961	1.00000
RegionR8	-1.02	1.14	0.99958	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	2.094	1.14	0.99993	1.00000
RegenerationR2	3.752	1.14	0.00323	0.08697
RegenerationR3	2.218	1.14	0.11339	0.52711
RegenerationR4	2.026	1.14	0.25832	0.70596
RegenerationR5	1.612	1.14	0.19666	0.62879
RegenerationR6	3.277	1.14	0.03471	0.23347
RegenerationBL	0.096	1.14	0.99981	1.00000
RegenerationTP	0.61	1.14	1.00000	1.00000

Genes with expression patterns similar to MligTC455_28805

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28805	26	0.54	Mlig455_006382, Mlig455_011945	Neo: - Age: Down-Down-Up	CRB2	3	-	-	-	1.000	1.000	1.000	Mlig455_006382 {REF} {Length: 1183} {TRANSSPLICED} {Pfam: Integrase zinc binding domain [PF17921.3, score=20.2]} {RNA1509_18097} {RNA1310_495.1} {RNA815_13065} Mlig455_011945 {REF} {Length: 4613} {Pfam: EGF-like domain [PF00008.29, score=69.1]; Human growth factor-like EGF [PF12661.9, score=31.1]; EGF-like domain [PF07974.15, score=30.1]} {Human: ENSG00000148204, CRB2, crumbs 2, cell polarity complex component, [Score=122, Expect=4e-28]; ENSG00000134250, NOTCH2, notch 2, [Score=121, Expect=1e-27]; ENSG00000148400, NOTCH1, notch 1, [Score=120, Expect=2e-27]; ENSG00000275555, DLL1, delta like canonical Notch ligand 1, [Score=117, Expect=2e-26]; ENSG00000198719, DLL1, delta like canonical Notch ligand 1, [Score=117, Expect=2e-26]} {Mouse: ENSMUSG00000028369, Svep1, sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, [Score=125, Expect=6e-29]; ENSMUSG00000027878, Notch2, notch 2, [Score=122, Expect=3e-28]; ENSMUSG00000026923, Notch1, notch 1, [Score=121, Expect=9e-28]} {Dmel: FBgn0259685, crb, crumbs, [Score=135, Expect=2e-32]} {Celegans: WBGene00000792, crb-1, Drosophila CRumBs homolog, [Score=108, Expect=6e-24]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=113, Expect=1e-25]} {RNA1509_35846} {RNA1310_9600.1} {RNA815_3985.1}
2.	MligTC455_06531	49	1.03	Mlig455_042239	Neo: - Age: -		1.758	-	-	-	0.807	-	0.951	Mlig455_042239 {REF} {Length: 790} {RNA1310_108711}
3.	MligTC455_14342	32	0.67	Mlig455_011258	Neo: - Age: -	AL031281.2	0.98	-	-	-	0.980	-	-	Mlig455_011258 {REF} {Length: 1386} {Pfam: Ras family [PF00071.24, score=113.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=37.6]} {Human: ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=100, Expect=3e-25]; ENSG00000070831, CDC42, cell division cycle 42, [Score=100, Expect=3e-25]; ENSG00000119729, RHOQ, ras homolog family member Q, [Score=97.4, Expect=1e-23]; ENSG00000128340, RAC2, Rac family small GTPase 2, [Score=95.5, Expect=3e-23]} {Mouse: ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=100, Expect=2e-25]; ENSMUSG00000039960, Rhou, ras homolog family member U, [Score=98.2, Expect=1e-23]; ENSMUSG00000024143, Rhoq, ras homolog family member Q, [Score=97.8, Expect=5e-24]} {Dmel: FBgn0010341, Cdc42, [Score=101, Expect=1e-25]} {Celegans: WBGene00015646, mlt-10, [Score=141, Expect=1e-37]} {Smed: dd_Smed_v6_698_0_1, dd_Smed_v6_698_0_1, [Score=103, Expect=1e-26]} {RNA1310_33226.1} {RNA815_29146}
4.	MligTC455_23232	15	0.32	Mlig455_006559	Neo: - Age: -		0.975	-	-	-	0.975	-	-	Mlig455_006559 {REF} {Length: 5217} {Smed: dd_Smed_v6_2802_0_1, dd_Smed_v6_2802_0_1, [RH, Score=583, Expect=0.0]} {RNA1509_1489} {RNA1310_997.1} {RNA815_1017.1}
5.	MligTC455_57252	17	0.35	Mlig455_023500	Neo: - Age: -		0.963	-	-	-	-	-	0.963	Mlig455_023500 {REF} {Length: 264} {NoTransDecoderORF} {RNA1509_57341} {RNA1310_44982} {RNA815_24538}
6.	MligTC455_02420	47	0.97	Mlig455_012848	Neo: - Age: - Regeneration-upregulated R2: 6.145 Regeneration-enriched R2: 6.145	LPIN1	0.959	-	-	-	0.959	-	-	Mlig455_012848 {REF} {Length: 3636} {TRANSSPLICED} {Pfam: LNS2 (Lipin/Ned1/Smp2) [PF08235.15, score=184.8]; lipin, N-terminal conserved region [PF04571.16, score=102.5]; Lipin/Ned1/Smp2 multi-domain protein middle domain [PF16876.7, score=74.3]} {Human: ENSG00000134324, LPIN1, lipin 1, [Score=215, Expect=3e-58]} {Mouse: ENSMUSG00000024052, Lpin2, lipin 2, [Score=189, Expect=1e-49]; ENSMUSG00000027412, Lpin3, lipin 3, [Score=181, Expect=3e-47]} {Dmel: FBgn0263593, Lpin, Lipin, [Score=261, Expect=2e-74]} {Celegans: WBGene00010425, lpin-1, LiPIN (Mammalian lipodystrophy associated) homolog, [Score=179, Expect=1e-46]} {Smed: dd_Smed_v6_8002_0_1, dd_Smed_v6_8002_0_1, [Score=173, Expect=3e-45]} {RNA1509_11541} {RNA1310_27491, RNA1509_11541} {RNA1509_11541, RNA815_15975}
7.	MligTC455_09350	19	0.39	Mlig455_034571	Neo: - Age: -		0.956	-	-	-	-	-	0.956	Mlig455_034571 {REF} {Length: 1203} {NoTransDecoderORF} {RNA1509_51801} {RNA1310_47956} {RNA815_8157}
8.	MligTC455_18762	32	0.68	Mlig455_065265	Neo: - Age: -	ANK1	0.955	-	-	-	-	-	0.955	Mlig455_065265 {REF} {Length: 4359} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=267.6]; Ankyrin repeats (many copies) [PF13637.8, score=187.6]; Ankyrin repeat [PF00023.32, score=184.8]; Ankyrin repeats (many copies) [PF13857.8, score=167.0]; Ankyrin repeat [PF13606.8, score=145.8]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=271, Expect=5e-74]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=257, Expect=1e-69]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=229, Expect=2e-60]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=233, Expect=4e-62]} {Smed: dd_Smed_v6_6898_0_1, dd_Smed_v6_6898_0_1, [Score=218, Expect=5e-59]} {RNA1509_24588} {RNA1310_27979} {RNA815_13672}
9.	MligTC455_30575	30	0.62	Mlig455_038999	Neo: - Age: -		0.955	-	-	-	-	-	0.955	Mlig455_038999 {REF} {Length: 1377} {Pfam: PAN domain [PF00024.28, score=21.3]} {RNA1509_48973} {RNA1310_53414} {RNA815_46038}
10.	MligTC455_35837	20	0.43	Mlig455_050733, Mlig455_050742	Neo: - Age: -	SLC6A2	0.953	-	-	-	-	-	0.953	Mlig455_050733 {REF} {Length: 2445} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=693.3]} {Human: ENSG00000103546, SLC6A2, solute carrier family 6 member 2, [RH, Score=606, Expect=0.0]; ENSG00000142319, SLC6A3, solute carrier family 6 member 3, [RH, Score=582, Expect=0.0]; ENSG00000276996, SLC6A3, solute carrier family 6 member 3, [RH, Score=582, Expect=0.0]} {Mouse: ENSMUSG00000055368, Slc6a2, solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2, [RH, Score=607, Expect=0.0]; ENSMUSG00000021609, Slc6a3, solute carrier family 6 (neurotransmitter transporter, dopamine), member 3, [RH, Score=592, Expect=0.0]} {Dmel: FBgn0034136, DAT, Dopamine transporter, [RH, Score=699, Expect=0.0]} {Celegans: WBGene00000934, dat-1, Sodium-dependent dopamine transporter, [Score=588, Expect=0.0]} {Smed: dd_Smed_v6_17986_0_1, dd_Smed_v6_17986_0_1, [Score=732, Expect=0.0]} {RNA1509_10666} {RNA1310_45533} {RNA815_36799} Mlig455_050742 {REF} {Length: 6785} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=706.3]} {Human: ENSG00000103546, SLC6A2, solute carrier family 6 member 2, [RH, Score=614, Expect=0.0]; ENSG00000276996, SLC6A3, solute carrier family 6 member 3, [RH, Score=591, Expect=0.0]; ENSG00000142319, SLC6A3, solute carrier family 6 member 3, [RH, Score=591, Expect=0.0]} {Mouse: ENSMUSG00000055368, Slc6a2, solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2, [RH, Score=612, Expect=0.0]; ENSMUSG00000021609, Slc6a3, solute carrier family 6 (neurotransmitter transporter, dopamine), member 3, [RH, Score=601, Expect=0.0]} {Dmel: FBgn0034136, DAT, Dopamine transporter, [RH, Score=711, Expect=0.0]} {Celegans: WBGene00000934, dat-1, Sodium-dependent dopamine transporter, [RH, Score=597, Expect=0.0]} {Smed: dd_Smed_v6_17986_0_1, dd_Smed_v6_17986_0_1, [RH, Score=751, Expect=0.0]} {RNA1509_10666} {RNA1310_45533} {RNA815_36799}
11.	MligTC455_10260	16	0.33	Mlig455_001275	Neo: - Age: - Regeneration-enriched R5: 6.969 Regeneration-enriched R2: 6.274		0.952	-	-	-	-	-	0.952	Mlig455_001275 {REF} {Length: 1060} {NoTransDecoderORF} {RNA1509_42776} {RNA1310_54376} {RNA815_25013}
12.	MligTC455_20453	68	1.43	Mlig455_026036, Mlig455_043191	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_026036 {REF} {Length: 1944} {TRANSSPLICED} {RNA1310_38712} {RNA815_19806} Mlig455_043191 {REF} {Length: 338} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_38712} {RNA815_19806}
13.	MligTC455_42628	49	1.01	Mlig455_004834	Neo: - Age: -		0.952	-	-	-	-	-	0.952	Mlig455_004834 {REF} {Length: 443} {NoTransDecoderORF} {RNA1310_71959.1} {RNA815_64554}
14.	MligTC455_16674	36	0.74	Mlig455_024898	Neo: - Age: Down-Up-Down	KCNK10	0.951	-	-	-	-	-	0.951	Mlig455_024898 {REF} {Length: 2555} {Pfam: Ion channel [PF07885.18, score=112.5]} {Human: ENSG00000100433, KCNK10, potassium two pore domain channel subfamily K member 10, [Score=102, Expect=1e-22]; ENSG00000095981, KCNK16, potassium two pore domain channel subfamily K member 16, [Score=99.8, Expect=1e-22]; ENSG00000171303, KCNK3, potassium two pore domain channel subfamily K member 3, [Score=97.1, Expect=3e-21]} {Mouse: ENSMUSG00000040901, Kcnk18, potassium channel, subfamily K, member 18, [Score=103, Expect=2e-23]; ENSMUSG00000033854, Kcnk10, potassium channel, subfamily K, member 10, [Score=99.4, Expect=8e-22]} {Dmel: FBgn0033257, sand, sandman, [RH, Score=157, Expect=7e-43]} {Celegans: WBGene00010784, twk-48, TWiK family of potassium channels, [Score=167, Expect=4e-47]} {Smed: dd_Smed_v6_17586_0_1, dd_Smed_v6_17586_0_1, [RH, Score=367, Expect=9e-124]} {RNA1509_56216} {RNA1310_37097} {RNA815_11067}
15.	MligTC455_23544	169	3.53	Mlig455_021925	Neo: - Age: Up-Down-Down Region-enriched R2: 3.394/0.00033	DDR2	0.951	-	-	-	-	-	0.951	Mlig455_021925 {REF} {Length: 4813} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=205.5]; Protein kinase domain [PF00069.27, score=103.7]; F5/8 type C domain [PF00754.27, score=57.5]} {Human: ENSG00000162733, DDR2, discoidin domain receptor tyrosine kinase 2, [Score=249, Expect=1e-68]} {Mouse: ENSMUSG00000026674, Ddr2, discoidin domain receptor family, member 2, [Score=251, Expect=1e-69]} {Dmel: FBgn0053531, Ddr, Discoidin domain receptor, [Score=238, Expect=3e-64]} {Celegans: WBGene00017381, svh-4, Discoidin domain-containing receptor tyrosine kinase B, [Score=176, Expect=3e-45]} {Smed: dd_Smed_v6_22332_0_1, dd_Smed_v6_22332_0_1, [Score=187, Expect=2e-48]} {RNA1509_46581} {RNA1310_21361} {RNA815_21661}

Berezikov Lab - 2020-2021 © ERIBA