M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28942

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28942 26 0.55 Mlig455_024526

Neo: -

Age: Down-Up-Down

 Mlig455_024526 {REF} {Length: 6056} {TRANSSPLICED} {RNA1509_14315} {RNA1310_1783} {RNA815_29572}

Cumulative graph for MligTC455_28942

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 4.526 0.789 0.71869 1.00000
RegionR2 1.677 0.789 0.22404 0.59431
RegionR3 -2.352 0.789 1.00000 1.00000
RegionR4 -2.647 0.789 0.99959 1.00000
RegionR5 1.271 0.789 0.75707 1.00000
RegionR6 -0.055 0.789 0.56670 1.00000
RegionR7 -1.172 0.789 1.00000 1.00000
RegionR8 -1.248 0.789 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.921 0.789 0.99211 1.00000
RegenerationR2 2.415 0.789 0.08979 0.47924
RegenerationR3 3.828 0.789 0.06484 0.42916
RegenerationR4 1.534 0.789 0.96880 1.00000
RegenerationR5 0.22 0.789 0.29496 0.72255
RegenerationR6 4.305 0.789 0.02960 0.21471
RegenerationBL 1.275 0.789 0.99978 1.00000
RegenerationTP 3.44 0.789 0.16929 0.60200


Genes with expression patterns similar to MligTC455_28942

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28942 26 0.55 Mlig455_024526

Neo: -

Age: Down-Up-Down

 2 1.000 - - - 1.000 - Mlig455_024526 {REF} {Length: 6056} {TRANSSPLICED} {RNA1509_14315} {RNA1310_1783} {RNA815_29572}
2. MligTC455_06717 29 0.6 Mlig455_044972

Neo: -

Age: -

 0.984 - - - - 0.984 - Mlig455_044972 {REF} {Length: 529} {NoTransDecoderORF}
3. MligTC455_34655 89 1.86 Mlig455_058020, Mlig455_058176

Neo: -

Age: -

Region-enriched R2: 5.798/0.00826

 PPEF1 0.982 - - - - 0.982 -

Mlig455_058020 {REF} {Length: 3007} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=84.9]; EF-hand domain pair [PF13499.8, score=77.8]; EF hand [PF00036.34, score=66.0]; EF-hand domain pair [PF13833.8, score=52.1]; EF-hand domain [PF13405.8, score=48.4]; EF hand [PF13202.8, score=38.2]; PPP5 TPR repeat region [PF08321.14, score=37.0]; EF-hand domain [PF14658.8, score=23.0]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=20.4]} {Human: ENSG00000086717, PPEF1, protein phosphatase with EF-hand domain 1, [Score=416, Expect=2e-138]} {Mouse: ENSMUSG00000062168, Ppef1, protein phosphatase with EF hand calcium-binding domain 1, [Score=413, Expect=9e-138]} {Dmel: FBgn0265959, rdgC, retinal degeneration C, [Score=404, Expect=3e-134]} {Celegans: WBGene00003969, pef-1, Serine/threonine-protein phosphatase with EF-hands pef-1, [Score=455, Expect=2e-155]} {Smed: dd_Smed_v6_11874_0_2, dd_Smed_v6_11874_0_2, [Score=516, Expect=2e-178]} {RNA1509_3508} {RNA1310_10928.2} {RNA815_11707}

Mlig455_058176 {REF} {Length: 3371} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=102.6]; EF-hand domain pair [PF13499.8, score=72.6]; EF hand [PF00036.34, score=64.2]; EF-hand domain pair [PF13833.8, score=51.3]; EF-hand domain [PF13405.8, score=46.1]; EF hand [PF13202.8, score=36.7]; PPP5 TPR repeat region [PF08321.14, score=36.6]; EF-hand domain [PF14658.8, score=26.5]; IQ calmodulin-binding motif [PF00612.29, score=21.3]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=19.8]} {Human: ENSG00000086717, PPEF1, protein phosphatase with EF-hand domain 1, [RH, Score=546, Expect=0.0]} {Mouse: ENSMUSG00000062168, Ppef1, protein phosphatase with EF hand calcium-binding domain 1, [Score=520, Expect=3e-177]} {Dmel: FBgn0265959, rdgC, retinal degeneration C, [Score=529, Expect=2e-180]} {Celegans: WBGene00003969, pef-1, Serine/threonine-protein phosphatase with EF-hands pef-1, [Score=598, Expect=0.0]} {Smed: dd_Smed_v6_11874_0_1, dd_Smed_v6_11874_0_1, [Score=671, Expect=0.0]} {RNA1509_3508} {RNA1310_10928.2} {RNA815_11707}
4. MligTC455_43359 13 0.27 Mlig455_067133

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_067133 {REF} {Length: 3559} {NoTransDecoderORF} {RNA1509_41181} {RNA1310_42331} {RNA815_8694}
5. MligTC455_34439 8 0.17 Mlig455_051396

Neo: -

Age: -

 NFYC 0.968 - - - - 0.968 - Mlig455_051396 {REF} {Length: 2963} {TRANSSPLICED} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=47.7]; Core histone H2A/H2B/H3/H4 [PF00125.26, score=36.3]; CENP-S associating Centromere protein X [PF09415.12, score=19.0]} {Human: ENSG00000066136, NFYC, nuclear transcription factor Y subunit gamma, [Score=112, Expect=3e-28]} {Mouse: ENSMUSG00000032897, Nfyc, nuclear transcription factor-Y gamma, [Score=111, Expect=6e-29]} {Dmel: FBgn0029905, Nf-YC, Nuclear factor Y-box C, [Score=94.4, Expect=6e-22]} {Celegans: WBGene00017742, nfyc-1, Nuclear transcription factor Y subunit gamma, [Score=79.3, Expect=4e-18]} {Smed: dd_Smed_v6_5610_0_1, dd_Smed_v6_5610_0_1, [Score=134, Expect=1e-37]} {RNA1509_29895} {RNA1310_28267.1} {RNA815_30059}
6. MligTC455_22796 48 1.01 Mlig455_066731, Mlig455_066745

Neo: -

Age: Up-Down-Up

Region-enriched R5: 5.599/0.00476
Region-enriched R4: 3.896/0.00273

Regeneration-upregulated BL: 6.528

Regeneration-enriched BL: 6.528

 ANKRD23 0.966 - - - - 0.966 -

Mlig455_066731 {REF} {Length: 575} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.8]; Ankyrin repeats (many copies) [PF13637.8, score=55.0]; Ankyrin repeats (many copies) [PF13857.8, score=43.9]; Ankyrin repeat [PF00023.32, score=42.1]; Ankyrin repeat [PF13606.8, score=32.2]} {Human: ENSG00000163126, ANKRD23, ankyrin repeat domain 23, [Score=65.9, Expect=1e-12]; ENSG00000085185, BCORL1, BCL6 corepressor like 1, [Score=64.3, Expect=9e-12]; ENSG00000183337, BCOR, BCL6 corepressor, [Score=63.9, Expect=7e-12]; ENSG00000064490, RFXANK, regulatory factor X associated ankyrin containing protein, [Score=63.9, Expect=5e-12]; ENSG00000170921, TANC2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=63.9, Expect=2e-11]; ENSG00000101752, MIB1, mindbomb E3 ubiquitin protein ligase 1, [Score=62.8, Expect=3e-11]; ENSG00000029534, ANK1, ankyrin 1, [Score=62.8, Expect=4e-11]} {Mouse: ENSMUSG00000053580, Tanc2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=65.5, Expect=3e-12]; ENSMUSG00000036959, Bcorl1, BCL6 co-repressor-like 1, [Score=63.9, Expect=9e-12]; ENSMUSG00000036333, Kidins220, kinase D-interacting substrate 220, [Score=63.9, Expect=1e-11]; ENSMUSG00000024294, Mib1, mindbomb E3 ubiquitin protein ligase 1, [Score=63.2, Expect=2e-11]} {Dmel: FBgn0261554, CG42672, [Score=65.9, Expect=2e-12]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=56.6, Expect=1e-09]} {Smed: dd_Smed_v6_2072_0_20, dd_Smed_v6_2072_0_20, [Score=63.2, Expect=7e-12]} {RNA1509_15876} {RNA1310_604.1} {RNA815_475}

Mlig455_066745 {REF} {Length: 575} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.8]; Ankyrin repeats (many copies) [PF13637.8, score=55.0]; Ankyrin repeats (many copies) [PF13857.8, score=43.9]; Ankyrin repeat [PF00023.32, score=42.1]; Ankyrin repeat [PF13606.8, score=32.2]} {Human: ENSG00000163126, ANKRD23, ankyrin repeat domain 23, [Score=65.9, Expect=1e-12]; ENSG00000085185, BCORL1, BCL6 corepressor like 1, [Score=64.3, Expect=9e-12]; ENSG00000183337, BCOR, BCL6 corepressor, [Score=63.9, Expect=7e-12]; ENSG00000064490, RFXANK, regulatory factor X associated ankyrin containing protein, [Score=63.9, Expect=5e-12]; ENSG00000170921, TANC2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=63.9, Expect=2e-11]; ENSG00000101752, MIB1, mindbomb E3 ubiquitin protein ligase 1, [Score=62.8, Expect=3e-11]; ENSG00000029534, ANK1, ankyrin 1, [Score=62.8, Expect=4e-11]} {Mouse: ENSMUSG00000053580, Tanc2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=65.5, Expect=3e-12]; ENSMUSG00000036959, Bcorl1, BCL6 co-repressor-like 1, [Score=63.9, Expect=9e-12]; ENSMUSG00000036333, Kidins220, kinase D-interacting substrate 220, [Score=63.9, Expect=1e-11]; ENSMUSG00000024294, Mib1, mindbomb E3 ubiquitin protein ligase 1, [Score=63.2, Expect=2e-11]} {Dmel: FBgn0261554, CG42672, [Score=65.9, Expect=2e-12]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=56.6, Expect=1e-09]} {Smed: dd_Smed_v6_2072_0_20, dd_Smed_v6_2072_0_20, [Score=63.2, Expect=7e-12]} {RNA1509_15876} {RNA1310_604.1} {RNA815_475}
7. MligTC455_41515 72 1.5 Mlig455_018251

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_018251 {REF} {Length: 2630} {TRANSSPLICED} {RNA1509_46222} {RNA1310_24815} {RNA815_16210}
8. MligTC455_26134 100 2.08 Mlig455_037023

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_037023 {REF} {Length: 2841} {RNA1509_41127} {RNA1310_13927} {RNA815_18472}
9. MligTC455_17084 3912 81.51 Mlig455_013175, Mlig455_045995

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.971

 CA12 0.959 - - - - 0.959 -

Mlig455_013175 {REF} {Length: 1735} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=186.3]} {Human: ENSG00000074410, CA12, carbonic anhydrase 12, [Score=126, Expect=5e-33]; ENSG00000168748, CA7, carbonic anhydrase 7, [Score=121, Expect=7e-32]} {Mouse: ENSMUSG00000032373, Car12, carbonic anhydrase 12, [Score=133, Expect=1e-35]} {Dmel: FBgn0027844, CAH1, Carbonic anhydrase 1, [Score=105, Expect=2e-26]} {Celegans: WBGene00000283, cah-5, Putative carbonic anhydrase 5, [Score=87.4, Expect=2e-19]} {Smed: dd_Smed_v6_11683_0_1, dd_Smed_v6_11683_0_1, [RH, Score=167, Expect=4e-49]} {RNA1509_10777, RNA1509_21098} {RNA1310_14884.1, RNA1509_10777} {RNA1509_10777, RNA815_8568.1}

Mlig455_045995 {REF} {Length: 1770} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=184.2]} {Human: ENSG00000074410, CA12, carbonic anhydrase 12, [Score=125, Expect=8e-33]; ENSG00000168748, CA7, carbonic anhydrase 7, [Score=121, Expect=6e-32]} {Mouse: ENSMUSG00000032373, Car12, carbonic anhydrase 12, [Score=132, Expect=2e-35]} {Dmel: FBgn0038956, CG5379, [Score=106, Expect=4e-26]} {Celegans: WBGene00000283, cah-5, Putative carbonic anhydrase 5, [Score=87.8, Expect=2e-19]} {Smed: dd_Smed_v6_11683_0_1, dd_Smed_v6_11683_0_1, [RH, Score=171, Expect=6e-51]} {RNA1509_10449, RNA1509_21098, RNA1509_31212, RNA1509_48169} {RNA1310_14884.1, RNA1509_10449, RNA1509_21098, RNA1509_31212, RNA1509_48169} {RNA1509_10449, RNA1509_21098, RNA1509_31212, RNA1509_48169, RNA815_8568.1}
10. MligTC455_47295 21 0.43 Mlig455_036828

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_036828 {REF} {Length: 1579} {Pfam: TMEM206 protein family [PF15122.8, score=63.7]} {RNA1310_18723} {RNA815_19071}
11. MligTC455_08083 6 0.12 Mlig455_003708

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_003708 {REF} {Length: 532} {NoTransDecoderORF} {RNA1310_8013} {RNA815_43191}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA