Data search
Results for MligTC455_29425
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_29425 | 1662 | 34.63 | Mlig455_024071 | Neo: - Age: - Regeneration-upregulated R6: 1.829 Regeneration-enriched R6: 1.829 |
GCN1 | Mlig455_024071 {REF} {Length: 8504} {TRANSSPLICED} {Pfam: HEAT repeat [PF02985.24, score=109.6]; CLASP N terminal [PF12348.10, score=75.9]; HEAT repeats [PF13646.8, score=72.0]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=49.6]; Vacuolar 14 Fab1-binding region [PF12755.9, score=44.4]; RNAPII transcription regulator C-terminal [PF12460.10, score=38.0]; UME (NUC010) domain [PF08064.15, score=30.4]; HEAT-like repeat [PF13513.8, score=29.4]; Dopey, N-terminal [PF04118.16, score=22.0]; Adaptin N terminal region [PF01602.22, score=21.9]; Interferon-related developmental regulator (IFRD) [PF05004.15, score=21.1]} {Human: ENSG00000089154, GCN1, GCN1, eIF2 alpha kinase activator homolog, [Score=1230, Expect=0.0]} {Mouse: ENSMUSG00000041638, Gcn1l1, GCN1 general control of amino-acid synthesis 1-like 1 (yeast), [RH, Score=1322, Expect=0.0]} {Dmel: FBgn0039959, CG17514, [RH, Score=1229, Expect=0.0]} {Celegans: WBGene00021697, gcn-1, GCN (Yeast General Control Nondrepressible) homolog, [RH, Score=919, Expect=0.0]} {Smed: dd_Smed_v6_3929_0_1, dd_Smed_v6_3929_0_1, [RH, Score=937, Expect=0.0]} {RNA1509_2095, RNA1509_21822, RNA1509_24849, RNA1509_9007} {RNA1310_102.1, RNA1509_21822, RNA1509_24849, RNA1509_9007} {RNA1509_21822, RNA1509_24849, RNA1509_9007, RNA815_83} |
Cumulative graph for MligTC455_29425
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.389 | 5.256 | 0.20662 | 0.84604 | |
| RegionR2 | 0.686 | 5.256 | 0.16732 | 0.51208 | |
| RegionR3 | 0.078 | 5.256 | 0.84243 | 1.00000 | |
| RegionR4 | -0.028 | 5.256 | 0.95391 | 1.00000 | |
| RegionR5 | 0.746 | 5.256 | 0.03259 | 0.13765 | |
| RegionR6 | 0.031 | 5.256 | 0.93639 | 1.00000 | |
| RegionR7 | 0.419 | 5.256 | 0.38811 | 1.00000 | |
| RegionR8 | -0.543 | 5.256 | 0.44874 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 3.426 | 5.256 | 0.00294 | 0.27834 | |
| RegenerationR2 | 0.742 | 5.256 | 0.07958 | 0.45487 | |
| RegenerationR3 | 1.262 | 5.256 | 0.00693 | 0.15180 | |
| RegenerationR4 | 0.921 | 5.256 | 0.04783 | 0.35255 | |
| RegenerationR5 | 0.524 | 5.256 | 0.22166 | 0.65647 | |
| RegenerationR6 | 1.829 | 5.256 | 0.00004 | 0.00528 | Specific for R6: 1.829 |
| RegenerationBL | 1.521 | 5.256 | 0.00152 | 0.03028 | |
| RegenerationTP | -0.201 | 5.256 | 0.74991 | 1.00000 |
Genes with expression patterns similar to MligTC455_29425
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_29425 | 1662 | 34.63 | Mlig455_024071 | Neo: - Age: - Regeneration-upregulated R6: 1.829 Regeneration-enriched R6: 1.829 |
GCN1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_024071 {REF} {Length: 8504} {TRANSSPLICED} {Pfam: HEAT repeat [PF02985.24, score=109.6]; CLASP N terminal [PF12348.10, score=75.9]; HEAT repeats [PF13646.8, score=72.0]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=49.6]; Vacuolar 14 Fab1-binding region [PF12755.9, score=44.4]; RNAPII transcription regulator C-terminal [PF12460.10, score=38.0]; UME (NUC010) domain [PF08064.15, score=30.4]; HEAT-like repeat [PF13513.8, score=29.4]; Dopey, N-terminal [PF04118.16, score=22.0]; Adaptin N terminal region [PF01602.22, score=21.9]; Interferon-related developmental regulator (IFRD) [PF05004.15, score=21.1]} {Human: ENSG00000089154, GCN1, GCN1, eIF2 alpha kinase activator homolog, [Score=1230, Expect=0.0]} {Mouse: ENSMUSG00000041638, Gcn1l1, GCN1 general control of amino-acid synthesis 1-like 1 (yeast), [RH, Score=1322, Expect=0.0]} {Dmel: FBgn0039959, CG17514, [RH, Score=1229, Expect=0.0]} {Celegans: WBGene00021697, gcn-1, GCN (Yeast General Control Nondrepressible) homolog, [RH, Score=919, Expect=0.0]} {Smed: dd_Smed_v6_3929_0_1, dd_Smed_v6_3929_0_1, [RH, Score=937, Expect=0.0]} {RNA1509_2095, RNA1509_21822, RNA1509_24849, RNA1509_9007} {RNA1310_102.1, RNA1509_21822, RNA1509_24849, RNA1509_9007} {RNA1509_21822, RNA1509_24849, RNA1509_9007, RNA815_83} |
| 2. | MligTC455_29424 | 1655 | 34.49 | Mlig455_024008 | Neo: - Age: Up-Down-Down Regeneration-upregulated R6: 1.784 Regeneration-enriched R6: 1.784 |
GCN1 | 5.942 | 0.999 | 0.997 | 0.996 | 0.992 | 0.992 | 0.966 | Mlig455_024008 {REF} {Length: 9722} {TRANSSPLICED} {Pfam: HEAT repeat [PF02985.24, score=110.6]; CLASP N terminal [PF12348.10, score=75.8]; HEAT repeats [PF13646.8, score=72.6]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=50.3]; Vacuolar 14 Fab1-binding region [PF12755.9, score=42.7]; RNAPII transcription regulator C-terminal [PF12460.10, score=38.3]; Integrase zinc binding domain [PF17921.3, score=30.8]; Interferon-related developmental regulator (IFRD) [PF05004.15, score=27.1]; HEAT-like repeat [PF13513.8, score=24.3]; Adaptin N terminal region [PF01602.22, score=23.1]; Dopey, N-terminal [PF04118.16, score=21.3]; UME (NUC010) domain [PF08064.15, score=21.3]} {Human: ENSG00000089154, GCN1, GCN1, eIF2 alpha kinase activator homolog, [RH, Score=1226, Expect=0.0]} {Mouse: ENSMUSG00000041638, Gcn1l1, GCN1 general control of amino-acid synthesis 1-like 1 (yeast), [RH, Score=1285, Expect=0.0]} {Dmel: FBgn0039959, CG17514, [RH, Score=1231, Expect=0.0]} {Celegans: WBGene00021697, gcn-1, GCN (Yeast General Control Nondrepressible) homolog, [RH, Score=926, Expect=0.0]} {Smed: dd_Smed_v6_3929_0_1, dd_Smed_v6_3929_0_1, [RH, Score=937, Expect=0.0]} {RNA1509_2095} {RNA1310_102.1} {RNA815_83} |
| 3. | MligTC455_19458 | 1300 | 27.09 | Mlig455_007643 | Neo: - Age: logFC(26M/2M)=0.891 |
ATP6AP2 | 0.961 | - | - | - | - | 0.961 | - | Mlig455_007643 {REF} {Length: 3965} {Pfam: Renin receptor-like protein [PF07850.16, score=80.6]} {Human: ENSG00000182220, ATP6AP2, ATPase H+ transporting accessory protein 2, [RH, Score=73.2, Expect=3e-14]} {Mouse: ENSMUSG00000031007, Atp6ap2, ATPase, H+ transporting, lysosomal accessory protein 2, [RH, Score=73.6, Expect=3e-14]} {Dmel: FBgn0037671, VhaM8.9, Vacuolar H[+] ATPase M8.9 accessory subunit, [RH, Score=67.0, Expect=3e-12]} {Celegans: WBGene00010993, vha-20, Vacuolar H ATPase, [RH, Score=56.2, Expect=1e-08]} {Smed: dd_Smed_v6_1067_0_1, dd_Smed_v6_1067_0_1, [RH, Score=77.8, Expect=2e-18]} {RNA1509_44098} {RNA1310_8954} {RNA815_3484.1} |
| 4. | MligTC455_46359 | 1639 | 34.15 | Mlig455_002958 | Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.308 Region-enriched R5: 1.054/0.00491 |
RAE1 | 0.954 | - | - | - | 0.954 | - | - | Mlig455_002958 {REF} {Length: 1300} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=43.4]} {Human: ENSG00000101146, RAE1, ribonucleic acid export 1, [RH, Score=397, Expect=2e-137]} {Mouse: ENSMUSG00000027509, Rae1, ribonucleic acid export 1, [RH, Score=392, Expect=9e-136]} {Dmel: FBgn0034646, Rae1, [RH, Score=405, Expect=1e-141]} {Celegans: WBGene00003803, rae-1, mRNA export factor rae-1, [RH, Score=353, Expect=7e-121]} {Smed: dd_Smed_v6_3456_0_1, dd_Smed_v6_3456_0_1, [RH, Score=389, Expect=4e-135]} {RNA1509_12434, RNA1509_33157, RNA1509_55930} {RNA1310_24271, RNA1509_12434, RNA1509_33157, RNA1509_55930} {RNA1509_12434, RNA1509_33157, RNA1509_55930, RNA815_11521} |
| 5. | MligTC455_44631 | 1065 | 22.2 | Mlig455_031535 | Neo: - |
SNRNP70 | 0.951 | - | - | - | 0.951 | - | - | Mlig455_031535 {REF} {Length: 1596} {TRANSSPLICED} {Pfam: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal [PF12220.10, score=92.9]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=67.0]} {Human: ENSG00000104852, SNRNP70, small nuclear ribonucleoprotein U1 subunit 70, [RH, Score=238, Expect=1e-75]} {Mouse: ENSMUSG00000063511, Snrnp70, small nuclear ribonucleoprotein 70 (U1), [RH, Score=238, Expect=1e-75]} {Dmel: FBgn0016978, snRNP-U1-70K, small ribonucleoprotein particle U1 subunit 70K, [RH, Score=247, Expect=4e-79]} {Celegans: WBGene00004390, rnp-7, RNP (RRM RNA binding domain) containing, [RH, Score=242, Expect=9e-79]} {Smed: dd_Smed_v6_633_0_1, dd_Smed_v6_633_0_1, [RH, Score=315, Expect=2e-107]} {RNA1509_11652, RNA1509_27470} {RNA1310_6001.2, RNA1509_11652, RNA1509_27470} {RNA1509_11652, RNA1509_27470, RNA815_2161.1} |
Berezikov Lab - 2020-2021 © ERIBA