TomoSeq data search

Data search

Results for MligTC455_29569

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_29569	458	9.53	Mlig455_034168, Mlig455_040379	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.520	TRAF3	Mlig455_034168 {REF} {Length: 2313} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=30.0]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [RH, Score=259, Expect=8e-81]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=270, Expect=2e-84]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=128, Expect=4e-32]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=112, Expect=9e-27]} {Smed: dd_Smed_v6_3837_0_1, dd_Smed_v6_3837_0_1, [RH, Score=178, Expect=1e-50]} {RNA1509_37811} {RNA1310_11544} {RNA815_4083.1} Mlig455_040379 {REF} {Length: 3163} {Pfam: TRAF-type zinc finger [PF02176.20, score=38.0]; zinc finger of C3HC4-type, RING [PF15227.8, score=21.9]; zf-RING of BARD1-type protein [PF14835.8, score=18.8]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [RH, Score=303, Expect=2e-95]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [RH, Score=301, Expect=4e-95]; ENSMUSG00000026637, Traf5, TNF receptor-associated factor 5, [RH, Score=293, Expect=5e-92]; ENSMUSG00000111385, Traf5, TNF receptor-associated factor 5, [RH, Score=293, Expect=5e-92]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=122, Expect=1e-29]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=101, Expect=7e-23]} {Smed: dd_Smed_v6_4392_0_1, dd_Smed_v6_4392_0_1, [RH, Score=185, Expect=4e-52]} {RNA1509_37811} {RNA1310_15068.1, RNA1509_37811} {RNA1509_37811, RNA815_4083.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_29569

458

9.53

Mlig455_034168, Mlig455_040379

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.520

TRAF3

Mlig455_034168 {REF} {Length: 2313} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=30.0]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [RH, Score=259, Expect=8e-81]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=270, Expect=2e-84]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=128, Expect=4e-32]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=112, Expect=9e-27]} {Smed: dd_Smed_v6_3837_0_1, dd_Smed_v6_3837_0_1, [RH, Score=178, Expect=1e-50]} {RNA1509_37811} {RNA1310_11544} {RNA815_4083.1}

Mlig455_040379 {REF} {Length: 3163} {Pfam: TRAF-type zinc finger [PF02176.20, score=38.0]; zinc finger of C3HC4-type, RING [PF15227.8, score=21.9]; zf-RING of BARD1-type protein [PF14835.8, score=18.8]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [RH, Score=303, Expect=2e-95]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [RH, Score=301, Expect=4e-95]; ENSMUSG00000026637, Traf5, TNF receptor-associated factor 5, [RH, Score=293, Expect=5e-92]; ENSMUSG00000111385, Traf5, TNF receptor-associated factor 5, [RH, Score=293, Expect=5e-92]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=122, Expect=1e-29]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=101, Expect=7e-23]} {Smed: dd_Smed_v6_4392_0_1, dd_Smed_v6_4392_0_1, [RH, Score=185, Expect=4e-52]} {RNA1509_37811} {RNA1310_15068.1, RNA1509_37811} {RNA1509_37811, RNA815_4083.1}

Cumulative graph for MligTC455_29569

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-6.509	3.743	0.09313	0.65329
RegionR2	1.288	3.743	0.17308	0.51994
RegionR3	1.316	3.743	0.10459	0.56582
RegionR4	0.262	3.743	0.74356	1.00000
RegionR5	0.269	3.743	0.72730	1.00000
RegionR6	1.576	3.743	0.03639	0.35624
RegionR7	1.574	3.743	0.06566	0.49266
RegionR8	0.225	3.743	0.77451	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.908	3.743	0.99990	1.00000
RegenerationR2	1.107	3.743	0.03957	0.32884
RegenerationR3	0.729	3.743	0.23279	0.66731
RegenerationR4	1.254	3.743	0.06563	0.40863
RegenerationR5	0.836	3.743	0.15410	0.57380
RegenerationR6	-0.077	3.743	0.90251	1.00000
RegenerationBL	0.327	3.743	0.64043	0.97909
RegenerationTP	0.142	3.743	0.85908	1.00000

Genes with expression patterns similar to MligTC455_29569

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_29569	458	9.53	Mlig455_034168, Mlig455_040379	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.520	TRAF3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_034168 {REF} {Length: 2313} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=30.0]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [RH, Score=259, Expect=8e-81]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=270, Expect=2e-84]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=128, Expect=4e-32]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=112, Expect=9e-27]} {Smed: dd_Smed_v6_3837_0_1, dd_Smed_v6_3837_0_1, [RH, Score=178, Expect=1e-50]} {RNA1509_37811} {RNA1310_11544} {RNA815_4083.1} Mlig455_040379 {REF} {Length: 3163} {Pfam: TRAF-type zinc finger [PF02176.20, score=38.0]; zinc finger of C3HC4-type, RING [PF15227.8, score=21.9]; zf-RING of BARD1-type protein [PF14835.8, score=18.8]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [RH, Score=303, Expect=2e-95]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [RH, Score=301, Expect=4e-95]; ENSMUSG00000026637, Traf5, TNF receptor-associated factor 5, [RH, Score=293, Expect=5e-92]; ENSMUSG00000111385, Traf5, TNF receptor-associated factor 5, [RH, Score=293, Expect=5e-92]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=122, Expect=1e-29]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=101, Expect=7e-23]} {Smed: dd_Smed_v6_4392_0_1, dd_Smed_v6_4392_0_1, [RH, Score=185, Expect=4e-52]} {RNA1509_37811} {RNA1310_15068.1, RNA1509_37811} {RNA1509_37811, RNA815_4083.1}
2.	MligTC455_47579	133	2.76	Mlig455_041880	Neo: - Age: Down-Up-Down		0.956	-	-	-	-	0.956	-	Mlig455_041880 {REF} {Length: 2196} {TRANSSPLICED} {RNA1509_11215, RNA1509_36784} {RNA1310_37626, RNA1509_11215} {RNA1509_11215, RNA815_15592}
3.	MligTC455_11714	44	0.92	Mlig455_053084	Neo: - Age: Down-Up-Up		0.954	-	-	-	-	0.954	-	Mlig455_053084 {REF} {Length: 1095} {RNA1310_30524} {RNA815_15425}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts