M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29651

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29651 934 19.46 Mlig455_055194

Neo: Irradiation

Age: -

 SYNE1 Mlig455_055194 {REF} {Length: 5428} {Pfam: Spectrin repeat [PF00435.23, score=88.4]} {Human: ENSG00000131018, SYNE1, spectrin repeat containing nuclear envelope protein 1, [RH, Score=370, Expect=1e-106]} {Mouse: ENSMUSG00000096054, Syne1, spectrin repeat containing, nuclear envelope 1, [Score=389, Expect=1e-110]} {Dmel: FBgn0261836, Msp300, Muscle-specific protein 300 kDa, [Score=134, Expect=6e-31]} {Smed: dd_Smed_v6_5365_0_2, dd_Smed_v6_5365_0_2, [RH, Score=162, Expect=5e-40]} {RNA1509_2539} {RNA1310_140.1} {RNA815_913}

Cumulative graph for MligTC455_29651

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.715 4.559 0.46224 1.00000
RegionR2 0.398 4.559 0.32361 0.71570
RegionR3 -0.574 4.559 0.09790 0.54908
RegionR4 0.037 4.559 0.92419 1.00000
RegionR5 0.091 4.559 0.76104 1.00000
RegionR6 -0.04 4.559 0.90576 1.00000
RegionR7 0.205 4.559 0.60855 1.00000
RegionR8 0.597 4.559 0.18741 0.77643

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.987 4.559 0.09051 0.79889
RegenerationR2 0.157 4.559 0.63210 0.92812
RegenerationR3 0.609 4.559 0.11727 0.53360
RegenerationR4 -0.58 4.559 0.14197 0.56470
RegenerationR5 -0.604 4.559 0.09537 0.47323
RegenerationR6 0.003 4.559 0.99370 1.00000
RegenerationBL 0.057 4.559 0.89052 1.00000
RegenerationTP -1.243 4.559 0.01395 0.20213


Genes with expression patterns similar to MligTC455_29651

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29651 934 19.46 Mlig455_055194

Neo: Irradiation

Age: -

 SYNE1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_055194 {REF} {Length: 5428} {Pfam: Spectrin repeat [PF00435.23, score=88.4]} {Human: ENSG00000131018, SYNE1, spectrin repeat containing nuclear envelope protein 1, [RH, Score=370, Expect=1e-106]} {Mouse: ENSMUSG00000096054, Syne1, spectrin repeat containing, nuclear envelope 1, [Score=389, Expect=1e-110]} {Dmel: FBgn0261836, Msp300, Muscle-specific protein 300 kDa, [Score=134, Expect=6e-31]} {Smed: dd_Smed_v6_5365_0_2, dd_Smed_v6_5365_0_2, [RH, Score=162, Expect=5e-40]} {RNA1509_2539} {RNA1310_140.1} {RNA815_913}
2. MligTC455_29650 896 18.68 Mlig455_046008

Neo: -

Age: Up-Down-Down

 SYNE1 3.843 0.900 - - 0.977 0.984 0.982 Mlig455_046008 {REF} {Length: 18466} {Pfam: Spectrin repeat [PF00435.23, score=133.0]} {Human: ENSG00000131018, SYNE1, spectrin repeat containing nuclear envelope protein 1, [RH, Score=541, Expect=1e-152]} {Mouse: ENSMUSG00000096054, Syne1, spectrin repeat containing, nuclear envelope 1, [Score=567, Expect=7e-161]} {Dmel: FBgn0261836, Msp300, Muscle-specific protein 300 kDa, [Score=143, Expect=5e-33]} {Celegans: WBGene00006820, unc-89, Muscle M-line assembly protein unc-89, [Score=55.1, Expect=2e-06]} {Smed: dd_Smed_v6_5365_0_1, dd_Smed_v6_5365_0_1, [RH, Score=164, Expect=2e-39]} {RNA1509_10295, RNA1509_10318, RNA1509_18534, RNA1509_24323, RNA1509_2539, RNA1509_25805, RNA1509_29033, RNA1509_30250, RNA1509_32908, RNA1509_34796, RNA1509_36462, RNA1509_41039, RNA1509_43159, RNA1509_46436, RNA1509_54445, RNA1509_56117, RNA1509_59219, RNA1509_9177} {RNA1310_140.1, RNA1509_10295, RNA1509_10318, RNA1509_18534, RNA1509_24323, RNA1509_2539, RNA1509_25805, RNA1509_29033, RNA1509_30250, RNA1509_32908, RNA1509_34796, RNA1509_36462, RNA1509_41039, RNA1509_43159, RNA1509_46436, RNA1509_54445, RNA1509_56117, RNA1509_59219, RNA1509_9177} {RNA1509_10295, RNA1509_10318, RNA1509_18534, RNA1509_24323, RNA1509_2539, RNA1509_25805, RNA1509_29033, RNA1509_30250, RNA1509_32908, RNA1509_34796, RNA1509_36462, RNA1509_41039, RNA1509_43159, RNA1509_46436, RNA1509_54445, RNA1509_56117, RNA1509_59219, RNA1509_9177, RNA815_913}
3. MligTC455_43284 529 11.03 Mlig455_006526

Neo: -

Age: logFC(26M/2M)=-0.435

 ARMC3 1.826 - - - 0.964 0.862 - Mlig455_006526 {REF} {Length: 3183} {TRANSSPLICED} {Pfam: Armadillo/beta-catenin-like repeat [PF00514.25, score=100.6]; Ethylene-responsive protein kinase Le-CTR1 [PF14381.8, score=95.8]; HEAT repeats [PF13646.8, score=73.0]; HEAT repeat [PF02985.24, score=53.9]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=42.3]; HEAT-like repeat [PF13513.8, score=42.2]; V-ATPase subunit H [PF11698.10, score=40.9]; Armadillo-like [PF04826.15, score=28.2]; Adaptin N terminal region [PF01602.22, score=21.9]; Interferon-related developmental regulator (IFRD) [PF05004.15, score=18.7]} {Human: ENSG00000165309, ARMC3, armadillo repeat containing 3, [Score=526, Expect=3e-173]} {Mouse: ENSMUSG00000037683, Armc3, armadillo repeat containing 3, [RH, Score=492, Expect=4e-160]} {Dmel: FBgn0033794, CG13326, [Score=55.5, Expect=2e-07]} {Smed: dd_Smed_v6_9679_0_1, dd_Smed_v6_9679_0_1, [RH, Score=743, Expect=0.0]} {RNA1509_9668} {RNA1310_4998.1, RNA1509_9668} {RNA1509_9668, RNA815_8459}
4. MligTC455_37275 698 14.54 Mlig455_053298

Neo: -

Age: -

Region-enriched R4: 2.180/0.02051

 CEP104 1.806 - - - 0.848 - 0.958 Mlig455_053298 {REF} {Length: 4862} {TRANSSPLICED} {Pfam: UvrB/uvrC motif [PF02151.21, score=29.2]} {Human: ENSG00000116198, CEP104, centrosomal protein 104, [Score=559, Expect=0.0]} {Mouse: ENSMUSG00000039523, Cep104, centrosomal protein 104, [RH, Score=549, Expect=0.0]} {Dmel: FBgn0032800, CG10137, [Score=181, Expect=7e-47]} {Celegans: WBGene00011523, T06D8.2, [RH, Score=84.3, Expect=1e-16]} {Smed: dd_Smed_v6_10228_0_1, dd_Smed_v6_10228_0_1, [Score=595, Expect=0.0]} {RNA1509_3191, RNA1509_8359} {RNA1310_3596.2, RNA1509_8359} {RNA1509_8359, RNA815_945}
5. MligTC455_43786 401 8.35 Mlig455_054385

Neo: -

Age: -

 CCDC60 1.779 - - - 0.961 0.818 - Mlig455_054385 {REF} {Length: 3003} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4698) [PF15769.7, score=170.6]} {Human: ENSG00000183273, CCDC60, coiled-coil domain containing 60, [Score=62.8, Expect=2e-09]} {Mouse: ENSMUSG00000043913, Ccdc60, coiled-coil domain containing 60, [Score=62.4, Expect=1e-09]} {Smed: dd_Smed_v6_14286_0_1, dd_Smed_v6_14286_0_1, [Score=115, Expect=1e-26]} {RNA1509_58886} {RNA1310_1558.2} {RNA815_11153}
6. MligTC455_32430 1195 24.9 Mlig455_011237

Neo: -

Age: Up-Down-Down

Region-enriched R8: 2.184/0.00516

 MYO7A 1.762 - - - 0.961 0.801 - Mlig455_011237 {REF} {Length: 9218} {TRANSSPLICED} {Pfam: Myosin head (motor domain) [PF00063.23, score=618.5]; MyTH4 domain [PF00784.19, score=207.6]; FERM central domain [PF00373.20, score=76.8]; IQ calmodulin-binding motif [PF00612.29, score=52.2]; Variant SH3 domain [PF14604.8, score=31.6]; Variant SH3 domain [PF07653.19, score=23.3]; FERM N-terminal domain [PF09379.12, score=19.5]} {Human: ENSG00000137474, MYO7A, myosin VIIA, [RH, Score=2524, Expect=0.0]} {Mouse: ENSMUSG00000030761, Myo7a, myosin VIIA, [RH, Score=2538, Expect=0.0]} {Dmel: FBgn0000317, ck, crinkled, [RH, Score=2582, Expect=0.0]} {Celegans: WBGene00002039, hum-6, Unconventional myosin heavy chain 6, [RH, Score=1936, Expect=0.0]} {Smed: dd_Smed_v6_5823_0_1, dd_Smed_v6_5823_0_1, [RH, Score=2107, Expect=0.0]} {RNA1509_1498, RNA1509_16258, RNA1509_17857, RNA1509_27893} {RNA1310_167.1, RNA1509_1498, RNA1509_16258, RNA1509_17857, RNA1509_27893} {RNA1509_1498, RNA1509_16258, RNA1509_17857, RNA1509_27893, RNA815_130.1}
7. MligTC455_21802 801 16.69 Mlig455_051016

Neo: -

Age: Up-Down-Down

 1.757 - - - 0.800 0.957 - Mlig455_051016 {REF} {Length: 4793} {Pfam: WSC domain [PF01822.21, score=69.1]} {Mouse: ENSMUSG00000020811, Wscd1, WSC domain containing 1, [Score=53.9, Expect=1e-06]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=59.7, Expect=1e-08]} {RNA1509_25269} {RNA1310_284.1} {RNA815_96}
8. MligTC455_19728 819 17.07 Mlig455_060222

Neo: -

Age: -

 APEX2 1.73 - - - 0.768 - 0.962 Mlig455_060222 {REF} {Length: 2674} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=69.1]; GRF zinc finger [PF06839.14, score=42.3]; Endonuclease-reverse transcriptase [PF14529.8, score=32.6]} {Human: ENSG00000169188, APEX2, apurinic/apyrimidinic endodeoxyribonuclease 2, [RH, Score=313, Expect=4e-100]} {Mouse: ENSMUSG00000025269, Apex2, apurinic/apyrimidinic endonuclease 2, [RH, Score=303, Expect=2e-96]} {Dmel: FBgn0004584, Rrp1, Recombination repair protein 1, [Score=73.2, Expect=3e-13]} {Smed: dd_Smed_v6_7402_0_2, dd_Smed_v6_7402_0_2, [RH, Score=260, Expect=6e-81]} {RNA1509_44887} {RNA1310_18191.1} {RNA815_14603}
9. MligTC455_38148 787 16.4 Mlig455_067155

Neo: -

Age: -

 FAT1 1.705 - - - 0.959 0.746 - Mlig455_067155 {REF} {Length: 4823} {Pfam: Cadherin domain [PF00028.19, score=183.7]; EGF-like domain [PF00008.29, score=55.8]; Calcium-binding EGF domain [PF07645.17, score=31.4]; Laminin G domain [PF02210.26, score=24.7]} {Human: ENSG00000083857, FAT1, FAT atypical cadherin 1, [Score=292, Expect=3e-79]} {Mouse: ENSMUSG00000070047, Fat1, FAT atypical cadherin 1, [Score=299, Expect=2e-81]} {Dmel: FBgn0261574, kug, kugelei, [Score=213, Expect=3e-55]} {Celegans: WBGene00000396, cdh-4, Cadherin-4, [Score=189, Expect=9e-48]} {Smed: dd_Smed_v6_7638_0_1, dd_Smed_v6_7638_0_1, [Score=218, Expect=1e-56]} {RNA1509_13557} {RNA1310_1912.1} {RNA815_14235}
10. MligTC455_27509 515 10.73 Mlig455_023080

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.476

 1.701 0.740 - - 0.961 - - Mlig455_023080 {REF} {Length: 2939} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=39.0]; Ankyrin repeats (many copies) [PF13637.8, score=31.8]; Ankyrin repeat [PF00023.32, score=30.0]; Ankyrin repeat [PF13606.8, score=29.3]; Ankyrin repeats (many copies) [PF13857.8, score=24.6]} {Smed: dd_Smed_v6_16174_0_1, dd_Smed_v6_16174_0_1, [Score=48.5, Expect=2e-06]} {RNA1509_26758} {RNA1310_10050} {RNA815_9030.1}
11. MligTC455_30551 1025 21.35 Mlig455_023090, Mlig455_027761, Mlig455_039963

Neo: -

Age: -

 MAP3K19, MAP3K4, TNKS2 1.699 0.741 - - 0.958 - -

Mlig455_023090 {REF} {Length: 1558} {Pfam: Protein kinase domain [PF00069.27, score=168.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=125.5]; Fungal protein kinase [PF17667.3, score=29.9]; Phosphotransferase enzyme family [PF01636.25, score=23.8]; ABC1 atypical kinase-like domain [PF03109.18, score=20.6]} {Human: ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=134, Expect=3e-34]} {Mouse: ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=129, Expect=7e-33]; ENSMUSG00000028862, Map3k6, mitogen-activated protein kinase kinase kinase 6, [Score=125, Expect=2e-31]} {Dmel: FBgn0024329, Mekk1, [Score=129, Expect=7e-33]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=130, Expect=2e-33]} {Smed: dd_Smed_v6_5198_0_1, dd_Smed_v6_5198_0_1, [Score=108, Expect=3e-26]} {RNA1509_25366, RNA1509_28291, RNA1509_39879} {RNA1310_39116, RNA1509_25366, RNA1509_39879} {RNA1509_25366, RNA1509_39879, RNA815_9030.1}

Mlig455_027761 {REF} {Length: 3012} {Pfam: Protein kinase domain [PF00069.27, score=167.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=125.0]; Ankyrin repeats (3 copies) [PF12796.9, score=85.2]; Ankyrin repeats (many copies) [PF13637.8, score=60.2]; Ankyrin repeat [PF00023.32, score=56.0]; Ankyrin repeat [PF13606.8, score=54.2]; Ankyrin repeats (many copies) [PF13857.8, score=53.2]; Fungal protein kinase [PF17667.3, score=27.7]; ABC1 atypical kinase-like domain [PF03109.18, score=23.8]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=132, Expect=3e-32]; ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=130, Expect=2e-30]; ENSG00000142733, MAP3K6, mitogen-activated protein kinase kinase kinase 6, [Score=127, Expect=1e-29]} {Mouse: ENSMUSG00000028862, Map3k6, mitogen-activated protein kinase kinase kinase 6, [Score=130, Expect=9e-31]; ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=125, Expect=6e-29]} {Dmel: FBgn0024329, Mekk1, [Score=128, Expect=4e-30]} {Celegans: WBGene00006443, pak-2, Serine/threonine-protein kinase pak-2, [Score=105, Expect=8e-24]} {Smed: dd_Smed_v6_4849_0_1, dd_Smed_v6_4849_0_1, [Score=109, Expect=1e-24]} {RNA1509_27731} {RNA1310_10050} {RNA815_9030.1}

Mlig455_039963 {REF} {Length: 912} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=78.3]; Ankyrin repeat [PF13606.8, score=60.2]; Ankyrin repeats (many copies) [PF13637.8, score=56.1]; Ankyrin repeats (many copies) [PF13857.8, score=50.9]; Ankyrin repeat [PF00023.32, score=46.6]; Protein kinase domain [PF00069.27, score=37.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=30.6]} {Human: ENSG00000107854, TNKS2, tankyrase 2, [Score=68.2, Expect=2e-11]} {Mouse: ENSMUSG00000024811, Tnks2, tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2, [Score=66.2, Expect=6e-11]} {Dmel: FBgn0027508, Tnks, tankyrase, [Score=52.4, Expect=9e-07]} {Celegans: WBGene00006941, wnk-1, Serine/threonine-protein kinase WNK, [Score=49.3, Expect=7e-06]} {Smed: dd_Smed_v6_6201_0_1, dd_Smed_v6_6201_0_1, [Score=57.0, Expect=2e-08]} {RNA1509_39395} {RNA1310_28166} {RNA815_10088.2}
12. MligTC455_20264 3839 79.98 Mlig455_004009, Mlig455_004093

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.975

 ANK3 1.697 - - - - 0.972 0.725

Mlig455_004009 {REF} {Length: 4291} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=118.9]; Ankyrin repeat [PF00023.32, score=98.7]; Ankyrin repeats (many copies) [PF13637.8, score=90.0]; Ankyrin repeats (many copies) [PF13857.8, score=84.8]; Ankyrin repeat [PF13606.8, score=73.4]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=127, Expect=7e-29]; ENSG00000145362, ANK2, ankyrin 2, [Score=125, Expect=3e-28]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=124, Expect=5e-28]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=121, Expect=3e-27]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=121, Expect=3e-27]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=119, Expect=9e-27]} {Smed: dd_Smed_v6_2072_0_20, dd_Smed_v6_2072_0_20, [Score=119, Expect=7e-27]} {RNA1509_9109} {RNA1310_24854.1} {RNA815_11486}

Mlig455_004093 {REF} {Length: 4136} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=119.2]; Ankyrin repeat [PF00023.32, score=99.2]; Ankyrin repeats (many copies) [PF13637.8, score=90.2]; Ankyrin repeats (many copies) [PF13857.8, score=85.3]; Ankyrin repeat [PF13606.8, score=73.9]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=127, Expect=7e-29]; ENSG00000145362, ANK2, ankyrin 2, [Score=125, Expect=3e-28]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=123, Expect=7e-28]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=121, Expect=2e-27]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=120, Expect=5e-27]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=118, Expect=2e-26]} {Smed: dd_Smed_v6_2072_0_26, dd_Smed_v6_2072_0_26, [Score=119, Expect=6e-27]} {RNA1509_9109} {RNA1310_24854.1} {RNA815_11486}
13. MligTC455_36647 786 16.38 Mlig455_017686, Mlig455_053756

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.309

Region-enriched R4: 2.139/0.02125

 NWD1, NWD2 0.98 - - - - 0.980 -

Mlig455_017686 {REF} {Length: 5971} {Pfam: AAA domain [PF13401.8, score=21.4]; AAA ATPase domain [PF13191.8, score=19.6]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=61.2, Expect=2e-08]} {Mouse: ENSMUSG00000048148, Nwd1, NACHT and WD repeat domain containing 1, [Score=58.2, Expect=1e-07]; ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=57.0, Expect=3e-07]} {Dmel: FBgn0038397, CG10185, [Score=54.7, Expect=1e-06]} {RNA1509_31906} {RNA1310_765} {RNA815_1377}

Mlig455_053756 {REF} {Length: 5627} {TRANSSPLICED} {Pfam: AAA domain [PF13401.8, score=21.3]; AAA ATPase domain [PF13191.8, score=19.2]} {Human: ENSG00000188039, NWD1, NACHT and WD repeat domain containing 1, [Score=63.5, Expect=4e-09]; ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=60.5, Expect=3e-08]} {Mouse: ENSMUSG00000048148, Nwd1, NACHT and WD repeat domain containing 1, [Score=59.3, Expect=5e-08]} {RNA1509_23443} {RNA1310_765} {RNA815_1377}
14. MligTC455_43674 726 15.13 Mlig455_059232

Neo: -

Age: Up-Down-Down

 ABHD6 0.967 - - - 0.967 - - Mlig455_059232 {REF} {Length: 2884} {TRANSSPLICED} {Pfam: Alpha/beta hydrolase family [PF12697.9, score=63.6]; Serine aminopeptidase, S33 [PF12146.10, score=51.4]; alpha/beta hydrolase fold [PF00561.22, score=47.2]; Thioesterase domain [PF00975.22, score=21.3]; Palmitoyl protein thioesterase [PF02089.17, score=18.7]} {Human: ENSG00000163686, ABHD6, abhydrolase domain containing 6, [RH, Score=144, Expect=3e-39]} {Mouse: ENSMUSG00000025277, Abhd6, abhydrolase domain containing 6, [RH, Score=135, Expect=3e-36]} {RNA1509_24936, RNA1509_32918, RNA1509_50343} {RNA1310_20027.1, RNA1509_24936, RNA1509_32918, RNA1509_50343} {RNA1509_24936, RNA1509_32918, RNA1509_50343, RNA815_17908.1}
15. MligTC455_31914 588 12.26 Mlig455_062954

Neo: -

Age: logFC(26M/2M)=-0.527

 0.962 - - - - 0.962 - Mlig455_062954 {REF} {Length: 4090} {RNA1509_13632} {RNA1310_13490, RNA1509_13632} {RNA1509_13632, RNA815_5417.1}
16. MligTC455_28156 802 16.71 Mlig455_003147, Mlig455_032425, Mlig455_034911, Mlig455_035373, Mlig455_051607, Mlig455_054980, Mlig455_057443

Neo: -

Age: -

 0.961 - - - 0.961 - -

Mlig455_003147 {REF} {Length: 967} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_39121}

Mlig455_032425 {REF} {Length: 1839} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_2198.1}

Mlig455_034911 {REF} {Length: 964} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_39121}

Mlig455_035373 {REF} {Length: 283} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17062} {RNA815_22796.1}

Mlig455_051607 {REF} {Length: 334} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.3} {RNA815_39121}

Mlig455_054980 {REF} {Length: 345} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.3} {RNA815_39121}

Mlig455_057443 {REF} {Length: 938} {NoTransDecoderORF} {RNA1509_20409} {RNA1310_17737.3} {RNA815_39121}
17. MligTC455_25676 670 13.97 Mlig455_004461

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.456

 COL24A1 0.955 - - - - 0.955 - Mlig455_004461 {REF} {Length: 4125} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=458.3]; Fibrillar collagen C-terminal domain [PF01410.20, score=140.9]} {Human: ENSG00000171502, COL24A1, collagen type XXIV alpha 1 chain, [Score=354, Expect=1e-100]} {Mouse: ENSMUSG00000029661, Col1a2, collagen, type I, alpha 2, [Score=406, Expect=6e-120]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [Score=347, Expect=2e-98]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [Score=301, Expect=6e-84]} {Smed: dd_Smed_v6_8075_0_1, dd_Smed_v6_8075_0_1, [Score=464, Expect=2e-140]} {RNA1509_6841} {RNA1310_1385.1} {RNA815_7264}
18. MligTC455_21822 215 4.48 Mlig455_013947

Neo: -

Age: Down-Up-Down

 0.953 - - - 0.953 - - Mlig455_013947 {REF} {Length: 3269} {RNA1509_12460, RNA1509_29876} {RNA1310_5676, RNA1509_29876} {RNA1509_29876, RNA815_2024}
19. MligTC455_32191 2911 60.65 Mlig455_005657, Mlig455_005701

Neo: -

Age: -

Region-enriched R8: 1.420/0.00001

Regeneration-downregulated BL: -1.425

Regeneration-depleted BL: -1.425

 0.952 - - - - 0.952 -

Mlig455_005657 {REF} {Length: 961} {NoTransDecoderORF} {RNA1509_42159} {RNA1310_7460.1, RNA1509_42159} {RNA1509_42159, RNA815_5538}

Mlig455_005701 {REF} {Length: 476} {NoTransDecoderORF} {RNA1509_42159} {RNA1310_7460.1} {RNA815_5538}
20. MligTC455_37901 335 6.98 Mlig455_056248

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.829

 0.951 - - - 0.951 - - Mlig455_056248 {REF} {Length: 2926} {RNA1509_51793, RNA1509_6108} {RNA1310_13444.1, RNA1509_51793, RNA1509_6108} {RNA1509_51793, RNA1509_6108, RNA815_4706.1}
21. MligTC455_28144 413 8.6 Mlig455_004583, Mlig455_014444, Mlig455_017702, Mlig455_031687, Mlig455_040527

Neo: -

Age: -

 0.95 - - - 0.950 - -

Mlig455_004583 {REF} {Length: 1809} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}

Mlig455_014444 {REF} {Length: 2800} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}

Mlig455_017702 {REF} {Length: 1835} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}

Mlig455_031687 {REF} {Length: 2190} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}

Mlig455_040527 {REF} {Length: 2301} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA