TomoSeq data search

Data search

Results for MligTC455_29688

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_29688	2223	46.31	Mlig455_041357	Neo: Int S/G2/M Age: - Regeneration-enriched BL: 1.780 Regeneration-enriched R6: 1.462	SRSF4	Mlig455_041357 {REF} {Length: 3846} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=97.1]} {Human: ENSG00000116350, SRSF4, serine and arginine rich splicing factor 4, [Score=183, Expect=2e-55]} {Mouse: ENSMUSG00000028911, Srsf4, serine/arginine-rich splicing factor 4, [Score=184, Expect=8e-55]} {Dmel: FBgn0004587, B52, [Score=155, Expect=3e-45]} {Celegans: WBGene00004699, rsp-2, Probable splicing factor, arginine/serine-rich 2, [Score=137, Expect=3e-39]} {Smed: dd_Smed_v6_3431_0_1, dd_Smed_v6_3431_0_1, [Score=166, Expect=6e-50]} {RNA1509_7126} {RNA1310_2750} {RNA815_11603}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_29688

2223

46.31

Mlig455_041357

Neo: Int S/G2/M

Age: -

Regeneration-enriched BL: 1.780
Regeneration-enriched R6: 1.462

SRSF4

Mlig455_041357 {REF} {Length: 3846} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=97.1]} {Human: ENSG00000116350, SRSF4, serine and arginine rich splicing factor 4, [Score=183, Expect=2e-55]} {Mouse: ENSMUSG00000028911, Srsf4, serine/arginine-rich splicing factor 4, [Score=184, Expect=8e-55]} {Dmel: FBgn0004587, B52, [Score=155, Expect=3e-45]} {Celegans: WBGene00004699, rsp-2, Probable splicing factor, arginine/serine-rich 2, [Score=137, Expect=3e-39]} {Smed: dd_Smed_v6_3431_0_1, dd_Smed_v6_3431_0_1, [Score=166, Expect=6e-50]} {RNA1509_7126} {RNA1310_2750} {RNA815_11603}

Cumulative graph for MligTC455_29688

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.047	5.544	0.94692	1.00000
RegionR2	-0.217	5.544	0.49603	0.87680
RegionR3	-0.19	5.544	0.47521	0.97964
RegionR4	0.49	5.544	0.09373	0.29460
RegionR5	0.36	5.544	0.12391	0.35379
RegionR6	0.062	5.544	0.81769	1.00000
RegionR7	-0.387	5.544	0.28983	0.92327
RegionR8	-0.071	5.544	0.86741	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.755	5.544	0.37222	1.00000
RegenerationR2	0.222	5.544	0.42415	0.83024
RegenerationR3	0.921	5.544	0.00228	0.08218
RegenerationR4	0.67	5.544	0.02210	0.23706
RegenerationR5	0.561	5.544	0.03908	0.32577
RegenerationR6	1.462	5.544	0.00000	0.00029
RegenerationBL	1.78	5.544	0.00000	0.00000
RegenerationTP	0.935	5.544	0.01050	0.17435

Genes with expression patterns similar to MligTC455_29688

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_29688	2223	46.31	Mlig455_041357	Neo: Int S/G2/M Age: - Regeneration-enriched BL: 1.780 Regeneration-enriched R6: 1.462	SRSF4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_041357 {REF} {Length: 3846} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=97.1]} {Human: ENSG00000116350, SRSF4, serine and arginine rich splicing factor 4, [Score=183, Expect=2e-55]} {Mouse: ENSMUSG00000028911, Srsf4, serine/arginine-rich splicing factor 4, [Score=184, Expect=8e-55]} {Dmel: FBgn0004587, B52, [Score=155, Expect=3e-45]} {Celegans: WBGene00004699, rsp-2, Probable splicing factor, arginine/serine-rich 2, [Score=137, Expect=3e-39]} {Smed: dd_Smed_v6_3431_0_1, dd_Smed_v6_3431_0_1, [Score=166, Expect=6e-50]} {RNA1509_7126} {RNA1310_2750} {RNA815_11603}
2.	MligTC455_29687	2159	44.97	Mlig455_041331	Neo: - Age: - Regeneration-enriched BL: 1.814 Regeneration-enriched R6: 1.554	SRSF4	4.906	0.975	0.973	-	0.999	0.996	0.963	Mlig455_041331 {REF} {Length: 3942} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=94.9]} {Human: ENSG00000116350, SRSF4, serine and arginine rich splicing factor 4, [Score=176, Expect=8e-51]} {Mouse: ENSMUSG00000028911, Srsf4, serine/arginine-rich splicing factor 4, [Score=178, Expect=8e-52]} {Dmel: FBgn0004587, B52, [Score=151, Expect=4e-43]} {Celegans: WBGene00004699, rsp-2, Probable splicing factor, arginine/serine-rich 2, [Score=136, Expect=3e-38]} {Smed: dd_Smed_v6_3431_0_1, dd_Smed_v6_3431_0_1, [Score=160, Expect=4e-47]} {RNA1509_7126} {RNA1310_15244.1} {RNA815_1669.1}
3.	MligTC455_50619	1545	32.19	Mlig455_040307	Neo: - Age: -	SAFB	0.951	-	-	-	0.951	-	-	Mlig455_040307 {REF} {Length: 3646} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=48.3]; SAP domain [PF02037.29, score=32.5]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=22.9]} {Human: ENSG00000160633, SAFB, scaffold attachment factor B, [RH, Score=118, Expect=2e-26]} {Mouse: ENSMUSG00000042625, Safb2, scaffold attachment factor B2, [RH, Score=113, Expect=4e-25]} {Dmel: FBgn0039229, Saf-B, Scaffold attachment factor B, [RH, Score=89.0, Expect=1e-17]} {Celegans: WBGene00004984, spn-4, PIP-1, [Score=60.5, Expect=2e-09]} {Smed: dd_Smed_v6_3681_0_2, dd_Smed_v6_3681_0_2, [RH, Score=75.5, Expect=7e-14]} {RNA1509_33772, RNA1509_36259, RNA1509_4646} {RNA1310_3738.1, RNA1509_33772, RNA1509_36259} {RNA1509_33772, RNA1509_36259, RNA815_5498}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_29688

2223

46.31

Mlig455_041357

Neo: Int S/G2/M

Age: -

Regeneration-enriched BL: 1.780
Regeneration-enriched R6: 1.462

SRSF4

1.000

MligTC455_29687

2159

44.97

Mlig455_041331

Neo: -

Age: -

Regeneration-enriched BL: 1.814
Regeneration-enriched R6: 1.554

SRSF4

4.906

0.975

0.973

0.999

0.996

0.963

Mlig455_041331 {REF} {Length: 3942} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=94.9]} {Human: ENSG00000116350, SRSF4, serine and arginine rich splicing factor 4, [Score=176, Expect=8e-51]} {Mouse: ENSMUSG00000028911, Srsf4, serine/arginine-rich splicing factor 4, [Score=178, Expect=8e-52]} {Dmel: FBgn0004587, B52, [Score=151, Expect=4e-43]} {Celegans: WBGene00004699, rsp-2, Probable splicing factor, arginine/serine-rich 2, [Score=136, Expect=3e-38]} {Smed: dd_Smed_v6_3431_0_1, dd_Smed_v6_3431_0_1, [Score=160, Expect=4e-47]} {RNA1509_7126} {RNA1310_15244.1} {RNA815_1669.1}

MligTC455_50619

1545

32.19

Mlig455_040307

Neo: -

Age: -

SAFB

0.951

Mlig455_040307 {REF} {Length: 3646} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=48.3]; SAP domain [PF02037.29, score=32.5]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=22.9]} {Human: ENSG00000160633, SAFB, scaffold attachment factor B, [RH, Score=118, Expect=2e-26]} {Mouse: ENSMUSG00000042625, Safb2, scaffold attachment factor B2, [RH, Score=113, Expect=4e-25]} {Dmel: FBgn0039229, Saf-B, Scaffold attachment factor B, [RH, Score=89.0, Expect=1e-17]} {Celegans: WBGene00004984, spn-4, PIP-1, [Score=60.5, Expect=2e-09]} {Smed: dd_Smed_v6_3681_0_2, dd_Smed_v6_3681_0_2, [RH, Score=75.5, Expect=7e-14]} {RNA1509_33772, RNA1509_36259, RNA1509_4646} {RNA1310_3738.1, RNA1509_33772, RNA1509_36259} {RNA1509_33772, RNA1509_36259, RNA815_5498}