TomoSeq data search

Data search

Results for MligTC455_30038

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_30038

10769

224.34

Mlig455_053840, Mlig455_061457

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.282

RPLP2

Mlig455_053840 {REF} {Length: 600} {TRANSSPLICED} {Pfam: 60s Acidic ribosomal protein [PF00428.21, score=96.6]} {Human: ENSG00000177600, RPLP2, ribosomal protein lateral stalk subunit P2, [RH, Score=75.5, Expect=4e-18]} {Mouse: ENSMUSG00000025508, Rplp2, ribosomal protein, large P2, [RH, Score=75.5, Expect=2e-18]} {Dmel: FBgn0003274, RpLP2, Ribosomal protein LP2, [RH, Score=75.9, Expect=1e-18]} {Celegans: WBGene00004410, rla-2, Ribosomal protein, Large subunit, Acidic (P1), [RH, Score=80.9, Expect=8e-21]} {Smed: dd_Smed_v6_556_0_1, dd_Smed_v6_556_0_1, [RH, Score=75.5, Expect=8e-19]} {RNA1509_9757} {RNA1310_62092, RNA1509_9757} {RNA1509_9757, RNA815_31810}

Mlig455_061457 {REF} {Length: 1372}

Cumulative graph for MligTC455_30038

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.939	7.93	0.04551	0.51120
RegionR2	-0.51	7.93	0.14977	0.48329
RegionR3	0.282	7.93	0.34421	0.87987
RegionR4	0.367	7.93	0.26055	0.56299
RegionR5	0.675	7.93	0.01673	0.08499
RegionR6	0.246	7.93	0.40710	0.97654
RegionR7	0.289	7.93	0.32097	0.95644
RegionR8	-0.41	7.93	0.22235	0.82996

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.941	7.93	0.13430	0.86920
RegenerationR2	-0.226	7.93	0.55228	0.89471
RegenerationR3	-0.236	7.93	0.54342	0.87971
RegenerationR4	-0.309	7.93	0.43041	0.83065
RegenerationR5	-0.481	7.93	0.20752	0.64086
RegenerationR6	-0.419	7.93	0.28094	0.63047
RegenerationBL	-0.006	7.93	0.98594	1.00000
RegenerationTP	-0.22	7.93	0.54912	0.93229

Genes with expression patterns similar to MligTC455_30038

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_30038	10769	224.34	Mlig455_053840, Mlig455_061457	Neo: Int S/G2/M Age: logFC(26M/2M)=0.282	RPLP2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_053840 {REF} {Length: 600} {TRANSSPLICED} {Pfam: 60s Acidic ribosomal protein [PF00428.21, score=96.6]} {Human: ENSG00000177600, RPLP2, ribosomal protein lateral stalk subunit P2, [RH, Score=75.5, Expect=4e-18]} {Mouse: ENSMUSG00000025508, Rplp2, ribosomal protein, large P2, [RH, Score=75.5, Expect=2e-18]} {Dmel: FBgn0003274, RpLP2, Ribosomal protein LP2, [RH, Score=75.9, Expect=1e-18]} {Celegans: WBGene00004410, rla-2, Ribosomal protein, Large subunit, Acidic (P1), [RH, Score=80.9, Expect=8e-21]} {Smed: dd_Smed_v6_556_0_1, dd_Smed_v6_556_0_1, [RH, Score=75.5, Expect=8e-19]} {RNA1509_9757} {RNA1310_62092, RNA1509_9757} {RNA1509_9757, RNA815_31810} Mlig455_061457 {REF} {Length: 1372}
2.	MligTC455_49140	1042	21.71	Mlig455_010490	Neo: Int S/G2/M Age: logFC(26M/2M)=0.334	ZFR	0.974	-	-	-	-	-	0.974	Mlig455_010490 {REF} {Length: 3441} {TRANSSPLICED} {Pfam: DZF domain [PF07528.16, score=162.2]; Zinc-finger of C2H2 type [PF12874.9, score=72.4]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=55.5]} {Human: ENSG00000056097, ZFR, zinc finger RNA binding protein, [RH, Score=468, Expect=8e-149]} {Mouse: ENSMUSG00000022201, Zfr, zinc finger RNA binding protein, [RH, Score=466, Expect=4e-148]} {Dmel: FBgn0263603, Zn72D, Zinc-finger protein at 72D, [RH, Score=311, Expect=6e-92]} {Celegans: WBGene00022388, Y95B8A.8, [RH, Score=324, Expect=4e-98]} {Smed: dd_Smed_v6_3762_0_1, dd_Smed_v6_3762_0_1, [RH, Score=501, Expect=3e-164]} {RNA1509_12494} {RNA1310_3537.1, RNA1509_12494} {RNA1509_12494, RNA815_393.1}
3.	MligTC455_19942	770	16.04	Mlig455_045672	Neo: Int S/G2/M Age: - Region-enriched R5: 1.530/0.00045 Regeneration-upregulated BL: 2.332 Regeneration-enriched BL: 2.332	RNPS1	0.962	-	-	-	-	-	0.962	Mlig455_045672 {REF} {Length: 1204} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=46.9]} {Human: ENSG00000205937, RNPS1, RNA binding protein with serine rich domain 1, [RH, Score=119, Expect=6e-32]} {Mouse: ENSMUSG00000034681, Rnps1, ribonucleic acid binding protein S1, [RH, Score=119, Expect=7e-32]} {Dmel: FBgn0037707, RnpS1, RNA-binding protein S1, [RH, Score=94.0, Expect=5e-22]} {Celegans: WBGene00004388, rnp-5, RNP (RRM RNA binding domain) containing, [RH, Score=88.2, Expect=2e-20]} {Smed: dd_Smed_v6_1431_0_1, dd_Smed_v6_1431_0_1, [RH, Score=103, Expect=1e-25]} {RNA1509_14792} {RNA1310_28374, RNA1509_14792} {RNA1509_14792, RNA815_13087}
4.	MligTC455_45874	2616	54.5	Mlig455_025351, Mlig455_025395	Neo: Int S/G2/M Age: - Region-enriched R4: 1.206/0.01823 Regeneration-enriched BL: 2.077 Regeneration-enriched R6: 1.475	DHX15	0.962	-	-	-	-	-	0.962	Mlig455_025351 {REF} {Length: 3219} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=76.1]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=54.1]; Helicase conserved C-terminal domain [PF00271.33, score=44.9]; DEAD/DEAH box helicase [PF00270.31, score=32.8]; AAA domain [PF13245.8, score=20.0]; AAA domain [PF13401.8, score=18.9]} {Human: ENSG00000109606, DHX15, DEAH-box helicase 15, [Score=1049, Expect=0.0]} {Mouse: ENSMUSG00000029169, Dhx15, DEAH (Asp-Glu-Ala-His) box polypeptide 15, [Score=1036, Expect=0.0]} {Dmel: FBgn0033160, Dhx15, DEAH-box helicase 15, [Score=1030, Expect=0.0]} {Celegans: WBGene00018967, ddx-15, Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15, [Score=941, Expect=0.0]} {Smed: dd_Smed_v6_2043_0_1, dd_Smed_v6_2043_0_1, [Score=1092, Expect=0.0]} {RNA1509_2301} {RNA1310_4345.1} {RNA815_408.1} Mlig455_025395 {REF} {Length: 2952} {TRANSSPLICED} {Pfam: Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=82.3]; Helicase associated domain (HA2) [PF04408.25, score=80.5]; Helicase conserved C-terminal domain [PF00271.33, score=44.8]; DEAD/DEAH box helicase [PF00270.31, score=32.7]; AAA domain [PF13245.8, score=20.0]; AAA domain [PF13401.8, score=18.8]} {Human: ENSG00000109606, DHX15, DEAH-box helicase 15, [RH, Score=1192, Expect=0.0]} {Mouse: ENSMUSG00000029169, Dhx15, DEAH (Asp-Glu-Ala-His) box polypeptide 15, [RH, Score=1191, Expect=0.0]} {Dmel: FBgn0033160, Dhx15, DEAH-box helicase 15, [RH, Score=1186, Expect=0.0]} {Celegans: WBGene00018967, ddx-15, Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15, [RH, Score=1094, Expect=0.0]} {Smed: dd_Smed_v6_2043_0_1, dd_Smed_v6_2043_0_1, [RH, Score=1235, Expect=0.0]} {RNA1509_2301} {RNA1310_4345.2} {RNA815_408.2}
5.	MligTC455_49289	402	8.37	Mlig455_009864	Neo: Neoblast, stringent Age: -		0.962	-	-	-	-	-	0.962	Mlig455_009864 {REF} {Length: 2032} {TRANSSPLICED} {RNA1509_12825, RNA1509_19362, RNA1509_60056} {RNA1310_24631, RNA1509_12825, RNA1509_19362, RNA1509_60056} {RNA1509_12825, RNA1509_19362, RNA1509_60056, RNA815_4319.3}
6.	MligTC455_19143	186	3.86	Mlig455_040116	Neo: - Age: -		0.961	-	-	-	-	-	0.961	Mlig455_040116 {REF} {Length: 6995} {Smed: dd_Smed_v6_11519_0_1, dd_Smed_v6_11519_0_1, [RH, Score=600, Expect=0.0]} {RNA1509_43828, RNA1509_5002} {RNA1310_824.1, RNA1509_43828} {RNA1509_43828, RNA815_15829}
7.	MligTC455_25385	1186	24.7	Mlig455_058980	Neo: Int S/G2/M Age: -	SF3B3	0.96	-	-	-	-	-	0.960	Mlig455_058980 {REF} {Length: 4050} {Pfam: Mono-functional DNA-alkylating methyl methanesulfonate N-term [PF10433.11, score=591.2]; CPSF A subunit region [PF03178.17, score=274.4]} {Human: ENSG00000189091, SF3B3, splicing factor 3b subunit 3, [RH, Score=1840, Expect=0.0]} {Mouse: ENSMUSG00000033732, Sf3b3, splicing factor 3b, subunit 3, [RH, Score=1841, Expect=0.0]} {Dmel: FBgn0035162, Sf3b3, Splicing factor 3b subunit 3, [RH, Score=1713, Expect=0.0]} {Celegans: WBGene00019323, teg-4, Tumorous Enhancer of Glp-1(Gf), [RH, Score=1405, Expect=0.0]} {Smed: dd_Smed_v6_4241_0_1, dd_Smed_v6_4241_0_1, [RH, Score=1600, Expect=0.0]} {RNA1509_25911, RNA1509_35270, RNA1509_5382, RNA1509_57056} {RNA1310_2503, RNA1509_25911, RNA1509_35270, RNA1509_5382, RNA1509_57056} {RNA1509_25911, RNA1509_35270, RNA1509_5382, RNA1509_57056, RNA815_4779}
8.	MligTC455_44708	1291	26.9	Mlig455_063420, Mlig455_066634	Neo: - Age: - Regeneration-upregulated BL: 1.724 Regeneration-enriched BL: 1.724	NDEL1	0.96	-	-	-	-	-	0.960	Mlig455_063420 {REF} {Length: 2131} {TRANSSPLICED} {Pfam: NUDE protein, C-terminal conserved region [PF04880.15, score=66.1]} {Human: ENSG00000166579, NDEL1, nudE neurodevelopment protein 1 like 1, [RH, Score=192, Expect=2e-57]; ENSG00000275911, NDE1, nudE neurodevelopment protein 1, [RH, Score=186, Expect=4e-55]; ENSG00000072864, NDE1, nudE neurodevelopment protein 1, [RH, Score=186, Expect=4e-55]} {Mouse: ENSMUSG00000018736, Ndel1, nudE neurodevelopment protein 1 like 1, [RH, Score=191, Expect=2e-57]; ENSMUSG00000022678, Nde1, nudE neurodevelopment protein 1, [RH, Score=189, Expect=2e-56]} {Dmel: FBgn0036059, nudE, [RH, Score=114, Expect=2e-28]} {Celegans: WBGene00011230, nud-2, Aspergillus NUclear Division related, [Score=55.8, Expect=1e-08]} {Smed: dd_Smed_v6_1670_0_1, dd_Smed_v6_1670_0_1, [RH, Score=155, Expect=2e-43]} {RNA1509_18131, RNA1509_46395} {RNA1310_12291, RNA1509_18131, RNA1509_46395} {RNA1509_18131, RNA1509_46395, RNA815_21817} Mlig455_066634 {REF} {Length: 2098} {TRANSSPLICED} {Pfam: NUDE protein, C-terminal conserved region [PF04880.15, score=65.8]} {Human: ENSG00000166579, NDEL1, nudE neurodevelopment protein 1 like 1, [RH, Score=193, Expect=6e-58]; ENSG00000275911, NDE1, nudE neurodevelopment protein 1, [RH, Score=186, Expect=3e-55]; ENSG00000072864, NDE1, nudE neurodevelopment protein 1, [RH, Score=186, Expect=3e-55]} {Mouse: ENSMUSG00000018736, Ndel1, nudE neurodevelopment protein 1 like 1, [RH, Score=193, Expect=4e-58]; ENSMUSG00000022678, Nde1, nudE neurodevelopment protein 1, [RH, Score=189, Expect=2e-56]} {Dmel: FBgn0036059, nudE, [RH, Score=115, Expect=6e-29]} {Celegans: WBGene00011230, nud-2, Aspergillus NUclear Division related, [Score=55.8, Expect=1e-08]} {Smed: dd_Smed_v6_1670_0_1, dd_Smed_v6_1670_0_1, [RH, Score=154, Expect=2e-43]} {RNA1509_46395} {RNA1310_12291} {RNA815_21817}
9.	MligTC455_48048	304	6.34	Mlig455_065143	Neo: Irradiation Age: Up-Down-Down		0.959	-	-	-	-	-	0.959	Mlig455_065143 {REF} {Length: 4336} {TRANSSPLICED} {RNA1509_46828} {RNA1310_6402.1, RNA1509_46828} {RNA1509_46828, RNA815_12174}
10.	MligTC455_44775	275	5.73	Mlig455_039825	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_039825 {REF} {Length: 2484} {TRANSSPLICED} {Pfam: Profilin [PF00235.21, score=67.2]} {RNA1509_47918, RNA1509_52785, RNA1509_58110} {RNA1310_33338, RNA1509_52785, RNA1509_58110} {RNA1509_52785, RNA1509_58110, RNA815_21208}
11.	MligTC455_44891	1027	21.4	Mlig455_020674, Mlig455_059261	Neo: Int S/G2/M Age: -	SMARCC2	0.954	-	-	-	-	-	0.954	Mlig455_020674 {REF} {Length: 4439} {TRANSSPLICED} {Pfam: SWIRM-associated domain at the N-terminal [PF16496.7, score=268.8]; SWIRM domain [PF04433.19, score=105.3]; SWIRM-associated region 1 [PF16495.7, score=90.3]; SWIRM-associated domain at the C-terminal [PF16498.7, score=48.8]; Myb-like DNA-binding domain [PF00249.33, score=41.8]; Myb-like DNA-binding domain [PF13921.8, score=27.7]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=410, Expect=8e-123]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=410, Expect=8e-123]} {Dmel: FBgn0002783, mor, moira, [Score=371, Expect=3e-109]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=210, Expect=3e-56]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=620, Expect=0.0]} {RNA1509_5153} {RNA1310_2189} {RNA815_8217} Mlig455_059261 {REF} {Length: 4628} {Pfam: SWIRM-associated domain at the N-terminal [PF16496.7, score=268.7]; SWIRM domain [PF04433.19, score=105.1]; SWIRM-associated region 1 [PF16495.7, score=90.2]; SWIRM-associated domain at the C-terminal [PF16498.7, score=50.1]; Myb-like DNA-binding domain [PF00249.33, score=41.7]; Myb-like DNA-binding domain [PF13921.8, score=27.7]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=410, Expect=7e-122]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=410, Expect=2e-122]} {Dmel: FBgn0002783, mor, moira, [Score=371, Expect=2e-108]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=209, Expect=4e-56]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=619, Expect=0.0]} {RNA1509_49479, RNA1509_5153, RNA1509_57629} {RNA1310_2189, RNA1509_49479, RNA1509_5153, RNA1509_57629} {RNA1509_49479, RNA1509_5153, RNA1509_57629, RNA815_8217}
12.	MligTC455_29795	1641	34.19	Mlig455_046954	Neo: - Age: -	DDX39B	0.953	-	-	-	-	-	0.953	Mlig455_046954 {REF} {Length: 1734} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=141.2]; Helicase conserved C-terminal domain [PF00271.33, score=92.8]; U3-containing 90S pre-ribosomal complex subunit [PF14617.8, score=33.4]; Type III restriction enzyme, res subunit [PF04851.17, score=29.8]} {Human: ENSG00000225859, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000235439, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000215425, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000225073, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000198563, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000229496, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000230624, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000123136, DDX39A, DExD-box helicase 39A, [RH, Score=699, Expect=0.0]} {Mouse: ENSMUSG00000019432, Ddx39b, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B, [RH, Score=716, Expect=0.0]; ENSMUSG00000005481, Ddx39, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, [RH, Score=703, Expect=0.0]} {Dmel: FBgn0014189, Hel25E, Helicase at 25E, [RH, Score=699, Expect=0.0]} {Celegans: WBGene00001840, hel-1, Spliceosome RNA helicase DDX39B homolog, [RH, Score=654, Expect=0.0]} {Smed: dd_Smed_v6_724_0_1, dd_Smed_v6_724_0_1, [RH, Score=713, Expect=0.0]} {RNA1509_16673} {RNA1310_11845} {RNA815_6753}
13.	MligTC455_36633	360	7.51	Mlig455_036310	Neo: - Age: - Region-enriched R5: 1.918/0.00847	UBAC2	0.953	-	-	-	-	-	0.953	Mlig455_036310 {REF} {Length: 2211} {TRANSSPLICED} {Pfam: UBA/TS-N domain [PF00627.33, score=39.7]} {Human: ENSG00000134882, UBAC2, UBA domain containing 2, [RH, Score=162, Expect=7e-47]} {Mouse: ENSMUSG00000041765, Ubac2, ubiquitin associated domain containing 2, [RH, Score=155, Expect=1e-44]} {Smed: dd_Smed_v6_7267_0_1, dd_Smed_v6_7267_0_1, [RH, Score=164, Expect=5e-49]} {RNA1509_24042} {RNA1310_37732, RNA1509_24042} {RNA1509_24042, RNA815_24615}
14.	MligTC455_49571	30	0.62	Mlig455_004993	Neo: - Age: logFC(26M/2M)=0.531	DDX4	0.952	-	-	-	-	-	0.952	Mlig455_004993 {REF} {Length: 3458} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=148.8]; Zinc knuckle [PF00098.25, score=130.6]; Helicase conserved C-terminal domain [PF00271.33, score=95.5]; GAG-polyprotein viral zinc-finger [PF14787.8, score=31.1]; Zinc knuckle [PF13917.8, score=28.5]; Zinc knuckle [PF13696.8, score=28.2]; Type III restriction enzyme, res subunit [PF04851.17, score=27.4]} {Human: ENSG00000152670, DDX4, DEAD-box helicase 4, [Score=335, Expect=5e-104]} {Mouse: ENSMUSG00000021758, Ddx4, DEAD (Asp-Glu-Ala-Asp) box polypeptide 4, [Score=337, Expect=9e-105]} {Dmel: FBgn0283442, vas, vasa, [Score=329, Expect=2e-102]} {Celegans: WBGene00001598, glh-1, ATP-dependent RNA helicase glh-1, [Score=333, Expect=6e-103]} {Smed: dd_Smed_v6_1985_0_2, dd_Smed_v6_1985_0_2, [Score=328, Expect=4e-100]} {RNA1509_27748, RNA1509_54711} {RNA1310_12209, RNA1509_54711} {RNA1509_54711, RNA815_1800.1}
15.	MligTC455_44211	452	9.41	Mlig455_009049	Neo: Int S/G2/M Age: -		0.95	-	-	-	-	-	0.950	Mlig455_009049 {REF} {Length: 1286} {TRANSSPLICED} {Pfam: RFX5 N-terminal domain [PF18326.3, score=25.0]} {RNA1509_27379} {RNA1310_26623, RNA1509_27379} {RNA1509_27379, RNA815_11463}

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