TomoSeq data search

Data search

Results for MligTC455_44891

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_44891

1027

21.40

Mlig455_020674, Mlig455_059261

Neo: Int S/G2/M

Age: -

SMARCC2

Mlig455_020674 {REF} {Length: 4439} {TRANSSPLICED} {Pfam: SWIRM-associated domain at the N-terminal [PF16496.7, score=268.8]; SWIRM domain [PF04433.19, score=105.3]; SWIRM-associated region 1 [PF16495.7, score=90.3]; SWIRM-associated domain at the C-terminal [PF16498.7, score=48.8]; Myb-like DNA-binding domain [PF00249.33, score=41.8]; Myb-like DNA-binding domain [PF13921.8, score=27.7]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=410, Expect=8e-123]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=410, Expect=8e-123]} {Dmel: FBgn0002783, mor, moira, [Score=371, Expect=3e-109]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=210, Expect=3e-56]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=620, Expect=0.0]} {RNA1509_5153} {RNA1310_2189} {RNA815_8217}

Mlig455_059261 {REF} {Length: 4628} {Pfam: SWIRM-associated domain at the N-terminal [PF16496.7, score=268.7]; SWIRM domain [PF04433.19, score=105.1]; SWIRM-associated region 1 [PF16495.7, score=90.2]; SWIRM-associated domain at the C-terminal [PF16498.7, score=50.1]; Myb-like DNA-binding domain [PF00249.33, score=41.7]; Myb-like DNA-binding domain [PF13921.8, score=27.7]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=410, Expect=7e-122]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=410, Expect=2e-122]} {Dmel: FBgn0002783, mor, moira, [Score=371, Expect=2e-108]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=209, Expect=4e-56]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=619, Expect=0.0]} {RNA1509_49479, RNA1509_5153, RNA1509_57629} {RNA1310_2189, RNA1509_49479, RNA1509_5153, RNA1509_57629} {RNA1509_49479, RNA1509_5153, RNA1509_57629, RNA815_8217}

Cumulative graph for MligTC455_44891

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.302	4.634	0.80846	1.00000
RegionR2	-0.151	4.634	0.80209	1.00000
RegionR3	-0.204	4.634	0.68083	1.00000
RegionR4	0.523	4.634	0.34566	0.66640
RegionR5	0.696	4.634	0.10245	0.31003
RegionR6	0.018	4.634	0.96847	1.00000
RegionR7	0.808	4.634	0.12166	0.65854
RegionR8	-1.388	4.634	0.10646	0.60853

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.289	4.634	0.35246	1.00000
RegenerationR2	0.674	4.634	0.19462	0.63929
RegenerationR3	0.756	4.634	0.17646	0.61203
RegenerationR4	0.411	4.634	0.47213	0.85454
RegenerationR5	0.604	4.634	0.24225	0.67589
RegenerationR6	1.284	4.634	0.02025	0.17577
RegenerationBL	1.586	4.634	0.00527	0.06816
RegenerationTP	-0.165	4.634	0.82683	1.00000

Genes with expression patterns similar to MligTC455_44891

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_44891	1027	21.4	Mlig455_020674, Mlig455_059261	Neo: Int S/G2/M Age: -	SMARCC2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_020674 {REF} {Length: 4439} {TRANSSPLICED} {Pfam: SWIRM-associated domain at the N-terminal [PF16496.7, score=268.8]; SWIRM domain [PF04433.19, score=105.3]; SWIRM-associated region 1 [PF16495.7, score=90.3]; SWIRM-associated domain at the C-terminal [PF16498.7, score=48.8]; Myb-like DNA-binding domain [PF00249.33, score=41.8]; Myb-like DNA-binding domain [PF13921.8, score=27.7]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=410, Expect=8e-123]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=410, Expect=8e-123]} {Dmel: FBgn0002783, mor, moira, [Score=371, Expect=3e-109]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=210, Expect=3e-56]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=620, Expect=0.0]} {RNA1509_5153} {RNA1310_2189} {RNA815_8217} Mlig455_059261 {REF} {Length: 4628} {Pfam: SWIRM-associated domain at the N-terminal [PF16496.7, score=268.7]; SWIRM domain [PF04433.19, score=105.1]; SWIRM-associated region 1 [PF16495.7, score=90.2]; SWIRM-associated domain at the C-terminal [PF16498.7, score=50.1]; Myb-like DNA-binding domain [PF00249.33, score=41.7]; Myb-like DNA-binding domain [PF13921.8, score=27.7]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=410, Expect=7e-122]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=410, Expect=2e-122]} {Dmel: FBgn0002783, mor, moira, [Score=371, Expect=2e-108]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=209, Expect=4e-56]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=619, Expect=0.0]} {RNA1509_49479, RNA1509_5153, RNA1509_57629} {RNA1310_2189, RNA1509_49479, RNA1509_5153, RNA1509_57629} {RNA1509_49479, RNA1509_5153, RNA1509_57629, RNA815_8217}
2.	MligTC455_37694	289	6.03	Mlig455_068925	Neo: - Age: -	CCNC	1.761	-	-	-	0.807	-	0.954	Mlig455_068925 {REF} {Length: 2736} {TRANSSPLICED} {Pfam: Cyclin, N-terminal domain [PF00134.25, score=50.0]; Cyclin C-terminal domain [PF16899.7, score=31.8]} {Human: ENSG00000112237, CCNC, cyclin C, [RH, Score=324, Expect=2e-111]} {Mouse: ENSMUSG00000028252, Ccnc, cyclin C, [RH, Score=324, Expect=2e-111]} {Dmel: FBgn0004597, CycC, Cyclin C, [RH, Score=293, Expect=1e-99]} {Celegans: WBGene00000506, cic-1, Cyclin-C, [RH, Score=192, Expect=1e-59]} {Smed: dd_Smed_v6_4978_0_1, dd_Smed_v6_4978_0_1, [RH, Score=291, Expect=2e-98]} {RNA1509_17208} {RNA1310_16620.1, RNA1509_17208} {RNA1509_17208, RNA815_8673.1}
3.	MligTC455_54330	7696	160.34	Mlig455_041323, Mlig455_041349, Mlig455_056238	Neo: Neoblast, stringent Age: Down-Up-Up, logFC(26M/2M)=0.208	RBBP4	1.684	-	-	-	0.729	-	0.955	Mlig455_041323 {REF} {Length: 1697} {TRANSSPLICED} {Pfam: Histone-binding protein RBBP4 or subunit C of CAF1 complex [PF12265.10, score=99.4]; WD domain, G-beta repeat [PF00400.34, score=98.8]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=24.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=21.4]} {Human: ENSG00000162521, RBBP4, RB binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSG00000102054, RBBP7, RB binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Mouse: ENSMUSG00000057236, Rbbp4, retinoblastoma binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSMUSG00000031353, Rbbp7, retinoblastoma binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Dmel: FBgn0263979, Caf1-55, Chromatin assembly factor 1, p55 subunit, [RH, Score=743, Expect=0.0]} {Celegans: WBGene00003036, lin-53, Probable histone-binding protein lin-53, [RH, Score=627, Expect=0.0]} {Smed: dd_Smed_v6_2065_0_1, dd_Smed_v6_2065_0_1, [RH, Score=711, Expect=0.0]} {RNA1509_10409} {RNA1310_2174.1} {RNA815_6795} Mlig455_041349 {REF} {Length: 1697} {TRANSSPLICED} {Pfam: Histone-binding protein RBBP4 or subunit C of CAF1 complex [PF12265.10, score=99.4]; WD domain, G-beta repeat [PF00400.34, score=98.8]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=24.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=21.4]} {Human: ENSG00000162521, RBBP4, RB binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSG00000102054, RBBP7, RB binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Mouse: ENSMUSG00000057236, Rbbp4, retinoblastoma binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSMUSG00000031353, Rbbp7, retinoblastoma binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Dmel: FBgn0263979, Caf1-55, Chromatin assembly factor 1, p55 subunit, [RH, Score=743, Expect=0.0]} {Celegans: WBGene00003036, lin-53, Probable histone-binding protein lin-53, [RH, Score=627, Expect=0.0]} {Smed: dd_Smed_v6_2065_0_1, dd_Smed_v6_2065_0_1, [RH, Score=711, Expect=0.0]} {RNA1509_10409} {RNA1310_2174.1} {RNA815_6795} Mlig455_056238 {REF} {Length: 1697} {TRANSSPLICED} {Pfam: Histone-binding protein RBBP4 or subunit C of CAF1 complex [PF12265.10, score=99.4]; WD domain, G-beta repeat [PF00400.34, score=98.8]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=24.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=21.4]} {Human: ENSG00000162521, RBBP4, RB binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSG00000102054, RBBP7, RB binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Mouse: ENSMUSG00000057236, Rbbp4, retinoblastoma binding protein 4, chromatin remodeling factor, [RH, Score=766, Expect=0.0]; ENSMUSG00000031353, Rbbp7, retinoblastoma binding protein 7, chromatin remodeling factor, [RH, Score=731, Expect=0.0]} {Dmel: FBgn0263979, Caf1-55, Chromatin assembly factor 1, p55 subunit, [RH, Score=743, Expect=0.0]} {Celegans: WBGene00003036, lin-53, Probable histone-binding protein lin-53, [RH, Score=627, Expect=0.0]} {Smed: dd_Smed_v6_2065_0_1, dd_Smed_v6_2065_0_1, [RH, Score=711, Expect=0.0]} {RNA1509_10409, RNA1509_44954, RNA1509_51345} {RNA1310_2174.1, RNA1509_10409, RNA1509_44954, RNA1509_51345} {RNA1509_10409, RNA1509_44954, RNA1509_51345, RNA815_6795}
4.	MligTC455_21402	986	20.54	Mlig455_004010, Mlig455_004094	Neo: - Age: Down-Up-Up	SLC38A10	1.683	0.719	-	-	-	-	0.964	Mlig455_004010 {REF} {Length: 2208} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=164.2]; Tryptophan/tyrosine permease family [PF03222.15, score=33.8]} {Human: ENSG00000157637, SLC38A10, solute carrier family 38 member 10, [Score=271, Expect=3e-78]} {Mouse: ENSMUSG00000061306, Slc38a10, solute carrier family 38, member 10, [Score=277, Expect=1e-80]} {Dmel: FBgn0050394, CG30394, [RH, Score=238, Expect=4e-68]} {Celegans: WBGene00021765, Y51F10.4, [Score=192, Expect=4e-53]} {Smed: dd_Smed_v6_11525_0_2, dd_Smed_v6_11525_0_2, [RH, Score=205, Expect=1e-59]} {RNA1509_30902} {RNA1310_4708.1} {RNA815_535.1} Mlig455_004094 {REF} {Length: 2462} {Human: ENSG00000157637, SLC38A10, solute carrier family 38 member 10, [Score=102, Expect=3e-22]} {Mouse: ENSMUSG00000061306, Slc38a10, solute carrier family 38, member 10, [Score=118, Expect=1e-27]} {Dmel: FBgn0050394, CG30394, [Score=90.5, Expect=9e-19]} {Celegans: WBGene00021765, Y51F10.4, [Score=67.8, Expect=5e-12]} {Smed: dd_Smed_v6_11525_0_2, dd_Smed_v6_11525_0_2, [Score=82.8, Expect=6e-17]} {RNA1509_30902} {RNA1310_4708.1} {RNA815_535.1}
5.	MligTC455_16423	671	13.98	Mlig455_063619	Neo: Irradiation Age: - Region-enriched R5: 1.043/0.02517	PFAS	1.669	-	-	-	0.717	-	0.952	Mlig455_063619 {REF} {Length: 5734} {TRANSSPLICED} {Pfam: CobB/CobQ-like glutamine amidotransferase domain [PF13507.8, score=279.0]; AIR synthase related protein, C-terminal domain [PF02769.24, score=99.7]; Formylglycinamide ribonucleotide amidotransferase linker domain [PF18072.3, score=46.7]; Formylglycinamide ribonucleotide amidotransferase N-terminal [PF18076.3, score=45.0]} {Human: ENSG00000178921, PFAS, phosphoribosylformylglycinamidine synthase, [RH, Score=1038, Expect=0.0]} {Mouse: ENSMUSG00000020899, Pfas, phosphoribosylformylglycinamidine synthase (FGAR amidotransferase), [RH, Score=1056, Expect=0.0]} {Dmel: FBgn0000052, ade2, adenosine 2, [RH, Score=946, Expect=0.0]} {Celegans: WBGene00008654, F10F2.2, Probable phosphoribosylformylglycinamidine synthase, [RH, Score=953, Expect=0.0]} {Smed: dd_Smed_v6_5130_0_1, dd_Smed_v6_5130_0_1, [RH, Score=1002, Expect=0.0]} {RNA1509_6392} {RNA1310_1527.1} {RNA815_842.1}
6.	MligTC455_51302	430	8.96	Mlig455_027390	Neo: - Age: Down-Down-Up Region-enriched R5: 1.407/0.01233	TIMM22	0.969	-	-	-	-	-	0.969	Mlig455_027390 {REF} {Length: 1622} {TRANSSPLICED} {Pfam: Tim17/Tim22/Tim23/Pmp24 family [PF02466.21, score=94.4]} {Human: ENSG00000177370, TIMM22, translocase of inner mitochondrial membrane 22, [RH, Score=143, Expect=9e-43]; ENSG00000278501, TIMM22, translocase of inner mitochondrial membrane 22, [RH, Score=143, Expect=9e-43]; ENSG00000277649, TIMM22, translocase of inner mitochondrial membrane 22, [RH, Score=143, Expect=9e-43]} {Mouse: ENSMUSG00000020843, Timm22, translocase of inner mitochondrial membrane 22, [RH, Score=144, Expect=3e-43]} {Dmel: FBgn0051229, CG31229, [RH, Score=115, Expect=3e-32]} {Celegans: WBGene00008164, C47G2.3, Mitochondrial import inner membrane translocase subunit tim-22, [RH, Score=133, Expect=7e-39]} {Smed: dd_Smed_v6_9333_0_1, dd_Smed_v6_9333_0_1, [RH, Score=177, Expect=3e-56]} {RNA1509_23050, RNA1509_32512, RNA1509_50982} {RNA1310_46537, RNA1509_23050, RNA1509_32512, RNA1509_50982} {RNA1509_23050, RNA1509_32512, RNA1509_50982, RNA815_22653}
7.	MligTC455_48931	260	5.41	Mlig455_068891	Neo: Int S/G2/M Age: Up-Up-Up, logFC(26M/2M)=1.461		0.955	-	-	-	-	-	0.955	Mlig455_068891 {REF} {Length: 1249} {NoTransDecoderORF} {RNA1509_35461} {RNA1310_2913} {RNA815_4850.1}
8.	MligTC455_19143	186	3.86	Mlig455_040116	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_040116 {REF} {Length: 6995} {Smed: dd_Smed_v6_11519_0_1, dd_Smed_v6_11519_0_1, [RH, Score=600, Expect=0.0]} {RNA1509_43828, RNA1509_5002} {RNA1310_824.1, RNA1509_43828} {RNA1509_43828, RNA815_15829}
9.	MligTC455_30038	10769	224.34	Mlig455_053840, Mlig455_061457	Neo: Int S/G2/M Age: logFC(26M/2M)=0.282	RPLP2	0.954	-	-	-	-	-	0.954	Mlig455_053840 {REF} {Length: 600} {TRANSSPLICED} {Pfam: 60s Acidic ribosomal protein [PF00428.21, score=96.6]} {Human: ENSG00000177600, RPLP2, ribosomal protein lateral stalk subunit P2, [RH, Score=75.5, Expect=4e-18]} {Mouse: ENSMUSG00000025508, Rplp2, ribosomal protein, large P2, [RH, Score=75.5, Expect=2e-18]} {Dmel: FBgn0003274, RpLP2, Ribosomal protein LP2, [RH, Score=75.9, Expect=1e-18]} {Celegans: WBGene00004410, rla-2, Ribosomal protein, Large subunit, Acidic (P1), [RH, Score=80.9, Expect=8e-21]} {Smed: dd_Smed_v6_556_0_1, dd_Smed_v6_556_0_1, [RH, Score=75.5, Expect=8e-19]} {RNA1509_9757} {RNA1310_62092, RNA1509_9757} {RNA1509_9757, RNA815_31810} Mlig455_061457 {REF} {Length: 1372}

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