TomoSeq data search

Data search

Results for MligTC455_30071

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_30071

419

8.73

Mlig455_004694

Neo: Int S/G2/M

Age: -

TOP3A

Mlig455_004694 {REF} {Length: 4052} {TRANSSPLICED} {Pfam: DNA topoisomerase [PF01131.22, score=365.2]; GRF zinc finger [PF06839.14, score=114.9]; Toprim domain [PF01751.24, score=65.1]; Topoisomerase DNA binding C4 zinc finger [PF01396.21, score=37.6]} {Human: ENSG00000284238, TOP3A, DNA topoisomerase III alpha, [RH, Score=940, Expect=0.0]; ENSG00000177302, TOP3A, DNA topoisomerase III alpha, [RH, Score=940, Expect=0.0]} {Mouse: ENSMUSG00000002814, Top3a, topoisomerase (DNA) III alpha, [RH, Score=947, Expect=0.0]} {Dmel: FBgn0040268, Top3alpha, Topoisomerase 3alpha, [RH, Score=776, Expect=0.0]} {Celegans: WBGene00006596, top-3, DNA topoisomerase 3, [RH, Score=635, Expect=0.0]} {Smed: dd_Smed_v6_20479_0_1, dd_Smed_v6_20479_0_1, [RH, Score=641, Expect=0.0]} {RNA1509_11005} {RNA1310_4689.1} {RNA815_5623}

Cumulative graph for MligTC455_30071

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.026	3.588	0.98318	1.00000
RegionR2	0.77	3.588	0.23068	0.60313
RegionR3	-0.016	3.588	0.97999	1.00000
RegionR4	0.394	3.588	0.49052	0.81752
RegionR5	0.002	3.588	0.99015	1.00000
RegionR6	-0.331	3.588	0.54745	1.00000
RegionR7	0.869	3.588	0.18039	0.77780
RegionR8	-1.714	3.588	0.16377	0.73197

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.661	3.588	0.27237	0.97545
RegenerationR2	0.2	3.588	0.68331	0.94997
RegenerationR3	0.983	3.588	0.08622	0.47755
RegenerationR4	1.029	3.588	0.06295	0.40125
RegenerationR5	0.915	3.588	0.07139	0.41969
RegenerationR6	1.619	3.588	0.00503	0.08575
RegenerationBL	2.294	3.588	0.00043	0.01273
RegenerationTP	1.316	3.588	0.12956	0.54215

Genes with expression patterns similar to MligTC455_30071

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_30071	419	8.73	Mlig455_004694	Neo: Int S/G2/M Age: -	TOP3A	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_004694 {REF} {Length: 4052} {TRANSSPLICED} {Pfam: DNA topoisomerase [PF01131.22, score=365.2]; GRF zinc finger [PF06839.14, score=114.9]; Toprim domain [PF01751.24, score=65.1]; Topoisomerase DNA binding C4 zinc finger [PF01396.21, score=37.6]} {Human: ENSG00000284238, TOP3A, DNA topoisomerase III alpha, [RH, Score=940, Expect=0.0]; ENSG00000177302, TOP3A, DNA topoisomerase III alpha, [RH, Score=940, Expect=0.0]} {Mouse: ENSMUSG00000002814, Top3a, topoisomerase (DNA) III alpha, [RH, Score=947, Expect=0.0]} {Dmel: FBgn0040268, Top3alpha, Topoisomerase 3alpha, [RH, Score=776, Expect=0.0]} {Celegans: WBGene00006596, top-3, DNA topoisomerase 3, [RH, Score=635, Expect=0.0]} {Smed: dd_Smed_v6_20479_0_1, dd_Smed_v6_20479_0_1, [RH, Score=641, Expect=0.0]} {RNA1509_11005} {RNA1310_4689.1} {RNA815_5623}
2.	MligTC455_17282	910	18.96	Mlig455_013069	Neo: - Age: - Region-enriched R5: 1.392/0.00382 Region-enriched R4: 1.300/0.04858		1.681	-	-	-	-	0.954	0.727	Mlig455_013069 {REF} {Length: 1607} {TRANSSPLICED} {Pfam: Methyltransferase small domain [PF05175.16, score=68.5]; Methyltransferase domain [PF08242.14, score=41.8]; Methyltransferase domain [PF13649.8, score=39.4]; Methyltransferase domain [PF13847.8, score=36.1]; Methyltransferase domain [PF08241.14, score=33.5]; Putative methyltransferase [PF02390.19, score=31.4]; Methyltransferase domain [PF12847.9, score=27.0]; RNA methyltransferase [PF05971.14, score=26.1]; Lysine methyltransferase [PF10294.11, score=24.4]; Methyltransferase domain [PF13489.8, score=24.3]; tRNA methyltransferase complex GCD14 subunit [PF08704.12, score=23.7]; RNA cap guanine-N2 methyltransferase [PF09445.12, score=23.4]; Conserved hypothetical protein 95 [PF03602.17, score=22.8]; Domain of unknown function (DUF2431) [PF10354.11, score=22.5]; Methyltransferase domain [PF13578.8, score=21.5]; tRNA (adenine(22)-N(1))-methyltransferase [PF04816.14, score=21.2]; Putative RNA methylase family UPF0020 [PF01170.20, score=19.8]; Ribosomal protein L11 methyltransferase (PrmA) [PF06325.15, score=19.7]} {RNA1509_4717} {RNA1310_19616, RNA1509_4717} {RNA1509_4717, RNA815_4785.2}
3.	MligTC455_44242	791	16.49	Mlig455_055969	Neo: - Age: - Region-enriched R4: 2.144/0.00043 Region-enriched R5: 1.096/0.02532	ECH1	0.969	-	-	-	-	0.969	-	Mlig455_055969 {REF} {Length: 1128} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=141.3]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=91.8]} {Human: ENSG00000104823, ECH1, enoyl-CoA hydratase 1, [RH, Score=270, Expect=6e-89]; ENSG00000282853, ECH1, enoyl-CoA hydratase 1, [RH, Score=270, Expect=6e-89]} {Mouse: ENSMUSG00000053898, Ech1, enoyl coenzyme A hydratase 1, peroxisomal, [RH, Score=284, Expect=7e-95]} {Dmel: FBgn0031092, CG9577, [RH, Score=278, Expect=1e-92]} {Celegans: WBGene00019022, F58A6.1, [RH, Score=243, Expect=2e-79]} {Smed: dd_Smed_v6_2181_0_1, dd_Smed_v6_2181_0_1, [RH, Score=276, Expect=2e-92]} {RNA1509_12995, RNA1509_7707} {RNA1310_10485, RNA1509_12995, RNA1509_7707} {RNA1509_12995, RNA1509_7707, RNA815_14750}
4.	MligTC455_35808	493	10.27	Mlig455_061957	Neo: Int S/G2/M Age: -	PSMD5	0.965	-	-	-	0.965	-	-	Mlig455_061957 {REF} {Length: 1972} {TRANSSPLICED} {Pfam: Proteasome non-ATPase 26S subunit [PF10508.11, score=113.9]} {Human: ENSG00000095261, PSMD5, proteasome 26S subunit, non-ATPase 5, [RH, Score=115, Expect=4e-27]} {Mouse: ENSMUSG00000026869, Psmd5, proteasome (prosome, macropain) 26S subunit, non-ATPase, 5, [RH, Score=111, Expect=1e-25]} {Dmel: FBgn0030457, CG12096, [RH, Score=68.9, Expect=4e-12]} {RNA1509_19695, RNA1509_22815} {RNA1310_15225, RNA1509_19695} {RNA1509_19695, RNA815_6007.1}
5.	MligTC455_44982	463	9.65	Mlig455_038584	Neo: Int S/G2/M Age: Up-Down-Down, logFC(26M/2M)=-0.496	LZIC	0.963	-	-	-	-	0.963	-	Mlig455_038584 {REF} {Length: 2359} {TRANSSPLICED} {Pfam: Beta-catenin-interacting protein ICAT [PF06384.13, score=67.5]; AefR-like transcriptional repressor, C-terminal domain [PF14246.8, score=18.8]} {Human: ENSG00000162441, LZIC, leucine zipper and CTNNBIP1 domain containing, [RH, Score=190, Expect=5e-61]} {Mouse: ENSMUSG00000028990, Lzic, leucine zipper and CTNNBIP1 domain containing, [RH, Score=190, Expect=3e-61]} {Celegans: WBGene00022885, ZK1248.19, [RH, Score=107, Expect=2e-29]} {RNA1509_8229} {RNA1310_42784, RNA1509_8229} {RNA1509_8229, RNA815_19558}
6.	MligTC455_34528	264	5.5	Mlig455_060288	Neo: - Age: -	RAD9A	0.961	-	-	-	-	0.961	-	Mlig455_060288 {REF} {Length: 1685} {TRANSSPLICED} {Pfam: Rad9 [PF04139.15, score=160.9]} {Human: ENSG00000172613, RAD9A, RAD9 checkpoint clamp component A, [RH, Score=153, Expect=2e-41]} {Mouse: ENSMUSG00000097909, Rad9a, RAD9 checkpoint clamp component A, [RH, Score=154, Expect=5e-42]; ENSMUSG00000024824, Rad9a, RAD9 checkpoint clamp component A, [RH, Score=154, Expect=5e-42]} {Smed: dd_Smed_v6_14121_0_1, dd_Smed_v6_14121_0_1, [RH, Score=167, Expect=4e-47]} {RNA1509_21321} {RNA1310_15353.1} {RNA815_16837}

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