M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30179

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30179 55 1.15 Mlig455_009164

Neo: -

Age: -

 Mlig455_009164 {REF} {Length: 2127} {Pfam: Mab-21 protein [PF03281.16, score=40.2]} {RNA1509_48615} {RNA1310_1764.1} {RNA815_3668.1}

Cumulative graph for MligTC455_30179

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.049 1.394 0.59585 1.00000
RegionR2 -0.282 1.394 0.92868 1.00000
RegionR3 -1.389 1.394 0.99611 1.00000
RegionR4 1.319 1.394 0.29876 0.61113
RegionR5 -1.014 1.394 0.98946 1.00000
RegionR6 0.82 1.394 0.44570 1.00000
RegionR7 1.349 1.394 0.28728 0.92110
RegionR8 2.246 1.394 0.08667 0.55684

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.8 1.394 0.99993 1.00000
RegenerationR2 0.194 1.394 0.80807 0.99252
RegenerationR3 0.4 1.394 0.72012 0.95420
RegenerationR4 -1.197 1.394 0.23411 0.68282
RegenerationR5 -0.587 1.394 0.56667 0.89490
RegenerationR6 -2.594 1.394 0.01964 0.17305
RegenerationBL -5.423 1.394 0.01569 0.13214
RegenerationTP -2.056 1.394 0.10098 0.49381


Genes with expression patterns similar to MligTC455_30179

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30179 55 1.15 Mlig455_009164

Neo: -

Age: -

 5 1.000 1.000 1.000 1.000 1.000 - Mlig455_009164 {REF} {Length: 2127} {Pfam: Mab-21 protein [PF03281.16, score=40.2]} {RNA1509_48615} {RNA1310_1764.1} {RNA815_3668.1}
2. MligTC455_41959 209 4.35 Mlig455_040674

Neo: -

Age: logFC(26M/2M)=-0.559

 CALM2 1.682 0.728 - - 0.954 - - Mlig455_040674 {REF} {Length: 5045} {Pfam: EF-hand domain pair [PF13499.8, score=115.2]; EF-hand domain pair [PF13833.8, score=75.1]; EF-hand domain [PF08976.13, score=67.9]; EF hand [PF00036.34, score=66.3]; EF-hand domain [PF13405.8, score=60.5]; EF-hand domain [PF14658.8, score=34.6]; Family of unknown function (DUF5580) [PF17743.3, score=33.1]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=63.2, Expect=2e-10]} {Mouse: ENSMUSG00000022441, Efcab6, EF-hand calcium binding domain 6, [Score=107, Expect=6e-23]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=58.9, Expect=1e-09]} {Celegans: WBGene00006861, cal-5, CALmodulin related genes, [Score=61.2, Expect=1e-10]} {Smed: dd_Smed_v6_20435_0_1, dd_Smed_v6_20435_0_1, [RH, Score=166, Expect=1e-43]} {RNA1509_9023} {RNA1310_4944.1} {RNA815_7678}
3. MligTC455_07584 12 0.26 Mlig455_004930

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_004930 {REF} {Length: 958} {NoTransDecoderORF} {RNA1310_118817}
4. MligTC455_07977 31 0.65 Mlig455_048040

Neo: -

Age: -

 CYP2U1 0.973 - - - - 0.973 - Mlig455_048040 {REF} {Length: 1352} {Pfam: Cytochrome P450 [PF00067.24, score=285.7]} {Human: ENSG00000155016, CYP2U1, cytochrome P450 family 2 subfamily U member 1, [Score=220, Expect=3e-65]; ENSG00000197838, CYP2A13, cytochrome P450 family 2 subfamily A member 13, [Score=214, Expect=2e-63]; ENSG00000255974, CYP2A6, cytochrome P450 family 2 subfamily A member 6, [Score=213, Expect=5e-63]; ENSG00000134716, CYP2J2, cytochrome P450 family 2 subfamily J member 2, [Score=210, Expect=6e-62]} {Mouse: ENSMUSG00000066704, Cyp2b19, cytochrome P450, family 2, subfamily b, polypeptide 19, [Score=228, Expect=6e-69]; ENSMUSG00000028571, Cyp2j13, cytochrome P450, family 2, subfamily j, polypeptide 13, [Score=222, Expect=1e-66]; ENSMUSG00000027983, Cyp2u1, cytochrome P450, family 2, subfamily u, polypeptide 1, [Score=221, Expect=6e-66]; ENSMUSG00000116063, Cyp2u1, cytochrome P450, family 2, subfamily u, polypeptide 1, [Score=221, Expect=6e-66]; ENSMUSG00000052520, Cyp2j5, cytochrome P450, family 2, subfamily j, polypeptide 5, [Score=217, Expect=1e-64]; ENSMUSG00000081362, Cyp2j7, cytochrome P450, family 2, subfamily j, polypeptide 7, [Score=217, Expect=8e-65]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=202, Expect=5e-59]} {Celegans: WBGene00018260, cyp-33C7, CYtochrome P450 family, [Score=222, Expect=7e-67]} {Smed: dd_Smed_v6_3919_0_1, dd_Smed_v6_3919_0_1, [RH, Score=278, Expect=2e-88]} {RNA1509_3373} {RNA1310_14664, RNA1509_3373} {RNA1509_3373, RNA815_4893}
5. MligTC455_17298 50 1.04 Mlig455_058995

Neo: -

Age: -

 0.973 - - 0.973 - - - Mlig455_058995 {REF} {Length: 1306} {RNA1509_52268} {RNA1310_39317.2} {RNA815_42253}
6. MligTC455_19632 59 1.22 Mlig455_042807

Neo: -

Age: Up-Down-Up

 0.972 - - - - 0.972 - Mlig455_042807 {REF} {Length: 793} {NoTransDecoderORF} {RNA1509_32813} {RNA1310_51673, RNA1509_32813} {RNA1509_32813, RNA815_25910}
7. MligTC455_45973 79 1.65 Mlig455_001010

Neo: -

Age: -

 0.968 - - 0.968 - - - Mlig455_001010 {REF} {Length: 2106} {RNA1310_19123.1} {RNA815_17833}
8. MligTC455_13332 49 1.01 Mlig455_052737

Neo: -

Age: -

 0.965 - - - 0.965 - - Mlig455_052737 {REF} {Length: 1866} {NoTransDecoderORF} {RNA1509_10728} {RNA1310_11306.1} {RNA815_28207}
9. MligTC455_46788 260 5.41 Mlig455_063761

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.663

 0.965 - - - 0.965 - - Mlig455_063761 {REF} {Length: 329} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_38481} {RNA1310_68166.1, RNA1509_38481} {RNA1509_38481, RNA815_35753}
10. MligTC455_12268 21 0.44 Mlig455_020458

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_020458 {REF} {Length: 1693} {Pfam: TATA element modulatory factor 1 DNA binding [PF12329.10, score=20.4]} {RNA1509_10012, RNA1509_37655} {RNA1310_23404.1, RNA1509_10012, RNA1509_37655} {RNA1509_10012, RNA1509_37655, RNA815_8343.1}
11. MligTC455_16875 42 0.88 Mlig455_028243

Neo: -

Age: Up-Down-Down

 KCNK16 0.962 - - - 0.962 - - Mlig455_028243 {REF} {Length: 2676} {Pfam: Ion channel [PF07885.18, score=116.8]; Ion transport protein [PF00520.33, score=28.8]; Protein of unknown function (DUF3112) [PF11309.10, score=19.5]} {Human: ENSG00000095981, KCNK16, potassium two pore domain channel subfamily K member 16, [Score=97.8, Expect=5e-22]; ENSG00000186795, KCNK18, potassium two pore domain channel subfamily K member 18, [Score=97.4, Expect=2e-21]; ENSG00000100433, KCNK10, potassium two pore domain channel subfamily K member 10, [Score=94.4, Expect=6e-20]} {Mouse: ENSMUSG00000040901, Kcnk18, potassium channel, subfamily K, member 18, [Score=102, Expect=4e-23]; ENSMUSG00000023387, Kcnk16, potassium channel, subfamily K, member 16, [Score=98.2, Expect=2e-22]} {Dmel: FBgn0033257, sand, sandman, [Score=150, Expect=2e-40]} {Celegans: WBGene00010784, twk-48, TWiK family of potassium channels, [Score=162, Expect=5e-45]} {Smed: dd_Smed_v6_17586_0_1, dd_Smed_v6_17586_0_1, [Score=340, Expect=2e-113]} {RNA1509_39975} {RNA1310_18301.1, RNA1509_39975} {RNA1509_39975, RNA815_12440}
12. MligTC455_48244 75 1.56 Mlig455_059176

Neo: -

Age: -

 0.96 - - - 0.960 - - Mlig455_059176 {REF} {Length: 590} {NoTransDecoderORF} {RNA1310_59338} {RNA815_44564}
13. MligTC455_19586 643 13.4 Mlig455_064120, Mlig455_068981

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.075

Region-enriched R2: 4.002/0.00535

 0.958 - - 0.958 - - -

Mlig455_064120 {REF} {Length: 2223} {RNA1509_22549, RNA1509_44981} {RNA1310_41406.1, RNA1509_22549, RNA1509_44981} {RNA1509_22549, RNA1509_44981, RNA815_17251}

Mlig455_068981 {REF} {Length: 1510} {RNA1509_44981} {RNA1310_41406.1} {RNA815_17251}
14. MligTC455_13469 72 1.49 Mlig455_053617

Neo: Irradiation

Age: Up-Down-Down

 0.956 - - 0.956 - - - Mlig455_053617 {REF} {Length: 2463} {tRNA: Thr(CGT),pseudo, score=28.2} {Pfam: F-box domain [PF00646.35, score=33.5]; F-box-like [PF12937.9, score=26.8]} {RNA1509_46688} {RNA1310_36647.1} {RNA815_23340}
15. MligTC455_18552 339 7.06 Mlig455_058263, Mlig455_058280, Mlig455_070787

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.399

 0.955 - - - 0.955 - -

Mlig455_058263 {REF} {Length: 1837} {Pfam: Methyltransferase FkbM domain [PF05050.14, score=27.0]} {Smed: dd_Smed_v6_25359_0_1, dd_Smed_v6_25359_0_1, [RH, Score=117, Expect=2e-30]} {RNA1509_54302} {RNA1310_22341} {RNA815_49709}

Mlig455_058280 {REF} {Length: 2506} {Pfam: Methyltransferase FkbM domain [PF05050.14, score=27.0]} {Smed: dd_Smed_v6_25359_0_1, dd_Smed_v6_25359_0_1, [RH, Score=117, Expect=2e-30]} {RNA1509_54302} {RNA1310_22341} {RNA815_49709}

Mlig455_070787 {REF} {Length: 1620} {Smed: dd_Smed_v6_25359_0_1, dd_Smed_v6_25359_0_1, [Score=55.8, Expect=3e-09]} {RNA1509_54302} {RNA1310_22341, RNA1509_54302} {RNA1509_54302, RNA815_49709}
16. MligTC455_39556 156 3.25 Mlig455_064781

Neo: -

Age: -

 XPR1 0.954 - - - 0.954 - - Mlig455_064781 {REF} {Length: 3650} {TRANSSPLICED} {Pfam: EXS family [PF03124.16, score=281.1]; SPX domain [PF03105.21, score=100.6]} {Human: ENSG00000143324, XPR1, xenotropic and polytropic retrovirus receptor 1, [RH, Score=532, Expect=3e-179]} {Mouse: ENSMUSG00000026469, Xpr1, xenotropic and polytropic retrovirus receptor 1, [RH, Score=528, Expect=1e-177]} {Dmel: FBgn0035649, CG10483, [RH, Score=550, Expect=0.0]} {Celegans: WBGene00012659, Y39A1A.22, [Score=496, Expect=3e-165]} {Smed: dd_Smed_v6_5170_0_1, dd_Smed_v6_5170_0_1, [Score=546, Expect=0.0]} {RNA1509_28545, RNA1509_57168} {RNA1310_25972.1, RNA1509_28545, RNA1509_57168} {RNA1509_28545, RNA1509_57168, RNA815_13383}
17. MligTC455_39888 14 0.29 Mlig455_045313

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_045313 {REF} {Length: 2930} {NoTransDecoderORF} {RNA1509_33890} {RNA1310_17466.1} {RNA815_54569}
18. MligTC455_16014 135 2.81 Mlig455_057808

Neo: -

Age: -

 SLC6A3 0.953 - - - 0.953 - - Mlig455_057808 {REF} {Length: 3595} {tRNA: Undet(NNN),pseudo, score=28.6} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=586.5]} {Human: ENSG00000142319, SLC6A3, solute carrier family 6 member 3, [Score=521, Expect=1e-177]; ENSG00000276996, SLC6A3, solute carrier family 6 member 3, [Score=521, Expect=1e-177]; ENSG00000103546, SLC6A2, solute carrier family 6 member 2, [Score=505, Expect=1e-171]} {Mouse: ENSMUSG00000021609, Slc6a3, solute carrier family 6 (neurotransmitter transporter, dopamine), member 3, [Score=523, Expect=1e-178]; ENSMUSG00000055368, Slc6a2, solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2, [Score=511, Expect=3e-174]} {Dmel: FBgn0010414, SerT, Serotonin transporter, [Score=468, Expect=2e-157]} {Celegans: WBGene00000934, dat-1, Sodium-dependent dopamine transporter, [Score=433, Expect=4e-144]} {Smed: dd_Smed_v6_22486_0_1, dd_Smed_v6_22486_0_1, [RH, Score=571, Expect=0.0]} {RNA1509_41282} {RNA1310_11169, RNA1509_41282} {RNA1509_41282, RNA815_3966}
19. MligTC455_02568 214 4.45 Mlig455_062539

Neo: -

Age: -

Region-enriched R7: 6.001/0.00000
Region-enriched R6: 2.886/0.04360

 0.952 - - 0.952 - - - Mlig455_062539 {REF} {Length: 482} {RNA1509_3959} {RNA1310_64218.2} {RNA815_12565}
20. MligTC455_11214 227 4.72 Mlig455_041296, Mlig455_056196

Neo: Germline

Age: Up-Down-Down

Region-specific R4: 5.610

Region-enriched R4: 4.997/0.00000

 0.952 - - - - 0.952 -

Mlig455_041296 {REF} {Length: 2230} {Mouse: ENSMUSG00000038522, Mfsd4b1, major facilitator superfamily domain containing 4B1, [Score=67.8, Expect=1e-11]; ENSMUSG00000071335, Mfsd4b3, major facilitator superfamily domain containing 4B3, [Score=64.7, Expect=8e-11]} {RNA1509_25958} {RNA1310_9369} {RNA815_37361}

Mlig455_056196 {REF} {Length: 2701} {Mouse: ENSMUSG00000038522, Mfsd4b1, major facilitator superfamily domain containing 4B1, [Score=67.8, Expect=1e-11]; ENSMUSG00000071335, Mfsd4b3, major facilitator superfamily domain containing 4B3, [Score=64.7, Expect=8e-11]} {RNA1509_25958} {RNA1310_9369, RNA1509_25958} {RNA1509_25958, RNA815_37361}
21. MligTC455_32449 129 2.7 Mlig455_029634

Neo: -

Age: -

 PKD1L2 0.952 - - - 0.952 - - Mlig455_029634 {REF} {Length: 9922} {Pfam: Polycystin cation channel [PF08016.14, score=221.1]; REJ domain [PF02010.17, score=109.3]; PLAT/LH2 domain [PF01477.25, score=39.4]; Ion transport protein [PF00520.33, score=34.4]; PKD domain [PF00801.22, score=23.9]} {Human: ENSG00000166473, PKD1L2, polycystin 1 like 2 (gene/pseudogene), [Score=137, Expect=3e-31]; ENSG00000118762, PKD2, polycystin 2, transient receptor potential cation channel, [Score=135, Expect=3e-31]} {Mouse: ENSMUSG00000034416, Pkd1l2, polycystic kidney disease 1 like 2, [Score=151, Expect=8e-36]; ENSMUSG00000034462, Pkd2, polycystic kidney disease 2, [Score=144, Expect=6e-34]} {Celegans: WBGene00003058, lov-1, Location of vulva defective 1, [Score=164, Expect=8e-40]} {Smed: dd_Smed_v6_15525_0_1, dd_Smed_v6_15525_0_1, [Score=154, Expect=5e-37]} {RNA1509_5774} {RNA1310_70.1} {RNA815_41}
22. MligTC455_15154 10 0.21 Mlig455_045569

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_045569 {REF} {Length: 607} {NoTransDecoderORF} {RNA1509_37050} {RNA1310_20485} {RNA815_10188}
23. MligTC455_20935 333 6.94 Mlig455_022795

Neo: -

Age: Down-Up-Down

 0.95 - - - 0.950 - - Mlig455_022795 {REF} {Length: 1130} {NoTransDecoderORF} {RNA1509_54238} {RNA1310_21943.2} {RNA815_11106.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA