M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30230

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30230 57 1.19 Mlig455_040256

Neo: -

Age: -

 SETMAR Mlig455_040256 {REF} {Length: 2702} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=30.4]; DDE superfamily endonuclease [PF13358.8, score=18.5]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=63.9, Expect=7e-12]} {Smed: dd_Smed_v6_47836_0_1, dd_Smed_v6_47836_0_1, [Score=50.8, Expect=3e-09]} {RNA1509_27993} {RNA1310_38710} {RNA815_7268.1}

Cumulative graph for MligTC455_30230

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.354 1.288 1.00000 1.00000
RegionR2 1.087 1.288 1.00000 1.00000
RegionR3 1.365 1.288 0.99996 1.00000
RegionR4 -0.123 1.288 0.99996 1.00000
RegionR5 1.216 1.288 1.00000 1.00000
RegionR6 1.016 1.288 0.99998 1.00000
RegionR7 0.212 1.288 0.99998 1.00000
RegionR8 -1.418 1.288 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.407 1.288 1.00000 1.00000
RegenerationR2 4.726 1.288 0.00063 0.03488
RegenerationR3 3.477 1.288 0.05116 0.39218
RegenerationR4 4.111 1.288 0.00680 0.11927
RegenerationR5 3.859 1.288 0.00665 0.14889
RegenerationR6 4.649 1.288 0.01004 0.12350
RegenerationBL 5.686 1.288 0.00226 0.03916
RegenerationTP 5.053 1.288 0.05600 0.38507


Genes with expression patterns similar to MligTC455_30230

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30230 57 1.19 Mlig455_040256

Neo: -

Age: -

 SETMAR 2 - - - 1.000 1.000 - Mlig455_040256 {REF} {Length: 2702} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=30.4]; DDE superfamily endonuclease [PF13358.8, score=18.5]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=63.9, Expect=7e-12]} {Smed: dd_Smed_v6_47836_0_1, dd_Smed_v6_47836_0_1, [Score=50.8, Expect=3e-09]} {RNA1509_27993} {RNA1310_38710} {RNA815_7268.1}
2. MligTC455_17204 163 3.39 Mlig455_052035, Mlig455_057261

Neo: -

Age: logFC(26M/2M)=0.633

Region-enriched R2: 3.666/0.00172

 0.986 - - - - 0.986 -

Mlig455_052035 {REF} {Length: 833} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_64963} {RNA815_45593}

Mlig455_057261 {REF} {Length: 1330}
3. MligTC455_15449 384 7.99 Mlig455_043360

Neo: -

Age: -

 0.982 - - - - 0.982 - Mlig455_043360 {REF} {Length: 1602} {NoTransDecoderORF} {RNA1509_38319} {RNA1310_35989.1} {RNA815_36673}
4. MligTC455_25779 74 1.54 Mlig455_041754, Mlig455_062627, Mlig455_067536

Neo: -

Age: Down-Up-Down

 0.979 - - - - 0.979 -

Mlig455_041754 {REF} {Length: 3371} {Pfam: CCDC144C protein coiled-coil region [PF14915.8, score=22.4]} {RNA1509_31452} {RNA1310_15148} {RNA815_54661}

Mlig455_062627 {REF} {Length: 2676} {Pfam: CCDC144C protein coiled-coil region [PF14915.8, score=22.4]} {RNA1509_31452} {RNA1310_15148} {RNA815_54661}

Mlig455_067536 {REF} {Length: 1933} {Pfam: CCDC144C protein coiled-coil region [PF14915.8, score=22.4]} {RNA1509_31452} {RNA1310_15148, RNA1509_31452} {RNA1509_31452, RNA815_54661}
5. MligTC455_13788 51 1.05 Mlig455_007698

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_007698 {REF} {Length: 1318} {RNA1310_34364}
6. MligTC455_10775 50 1.05 Mlig455_023939

Neo: -

Age: -

 GABBR1 0.97 - - - - 0.970 - Mlig455_023939 {REF} {Length: 3689} {TRANSSPLICED} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=159.6]; Receptor family ligand binding region [PF01094.30, score=113.8]; Periplasmic binding protein [PF13458.8, score=20.4]} {Human: ENSG00000237112, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=166, Expect=5e-42]; ENSG00000206466, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=166, Expect=5e-42]; ENSG00000232569, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=166, Expect=5e-42]; ENSG00000237051, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=166, Expect=5e-42]; ENSG00000206511, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=166, Expect=5e-42]; ENSG00000204681, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=166, Expect=5e-42]; ENSG00000232632, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=166, Expect=5e-42]} {Mouse: ENSMUSG00000024462, Gabbr1, gamma-aminobutyric acid (GABA) B receptor, 1, [Score=166, Expect=6e-42]} {Dmel: FBgn0031275, GABA-B-R3, metabotropic GABA-B receptor subtype 3, [Score=151, Expect=3e-37]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=123, Expect=8e-29]} {Smed: dd_Smed_v6_51663_0_1, dd_Smed_v6_51663_0_1, [Score=72.4, Expect=6e-14]} {RNA1509_12849} {RNA1310_9423.1} {RNA815_7350.2}
7. MligTC455_52859 1033 21.52 Mlig455_049482

Neo: -

Age: logFC(26M/2M)=-0.394

 EFCAB10 0.967 - - - - 0.967 - Mlig455_049482 {REF} {Length: 648} {TRANSSPLICED} {Pfam: Family of unknown function (DUF5582) [PF17819.3, score=26.3]; Family of unknown function (DUF5586) [PF17824.3, score=24.5]} {Human: ENSG00000185055, EFCAB10, EF-hand calcium binding domain 10, [RH, Score=88.6, Expect=4e-23]} {Mouse: ENSMUSG00000020562, Efcab10, EF-hand calcium binding domain 10, [RH, Score=92.8, Expect=7e-25]} {Smed: dd_Smed_v6_6477_0_1, dd_Smed_v6_6477_0_1, [RH, Score=114, Expect=2e-33]} {RNA1509_32720} {RNA1310_54125.2, RNA1509_32720} {RNA1509_32720, RNA815_27872}
8. MligTC455_29543 94 1.96 Mlig455_066835

Neo: -

Age: Down-Down-Up

Region-enriched R2: 3.991/0.02759

 PGBD4 0.966 - - - - 0.966 - Mlig455_066835 {REF} {Length: 7088} {Pfam: Transposase IS4 [PF13843.8, score=213.7]} {Human: ENSG00000182405, PGBD4, piggyBac transposable element derived 4, [RH, Score=206, Expect=4e-59]} {Mouse: ENSMUSG00000050751, Pgbd5, piggyBac transposable element derived 5, [RH, Score=74.3, Expect=1e-13]} {Dmel: FBgn0037633, CG9839, [RH, Score=96.3, Expect=7e-21]} {Smed: dd_Smed_v6_48522_0_1, dd_Smed_v6_48522_0_1, [RH, Score=116, Expect=1e-29]} {RNA1509_18157} {RNA1310_616.1} {RNA815_9301.1}
9. MligTC455_32185 276 5.75 Mlig455_010153, Mlig455_010215

Neo: -

Age: -

Region-enriched R5: 1.367/0.00654

 PPP4C 0.965 - - - 0.965 - -

Mlig455_010153 {REF} {Length: 1805} {TRANSSPLICED} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=139.3]; Serine-threonine protein phosphatase N-terminal domain [PF16891.7, score=19.1]} {Human: ENSG00000149923, PPP4C, protein phosphatase 4 catalytic subunit, [RH, Score=560, Expect=0.0]} {Mouse: ENSMUSG00000030697, Ppp4c, protein phosphatase 4, catalytic subunit, [RH, Score=560, Expect=0.0]} {Dmel: FBgn0023177, Pp4-19C, Protein phosphatase 19C, [RH, Score=538, Expect=0.0]} {Celegans: WBGene00004085, pph-4.1, Serine/threonine-protein phosphatase 4 catalytic subunit 1, [RH, Score=516, Expect=0.0]} {Smed: dd_Smed_v6_1324_0_1, dd_Smed_v6_1324_0_1, [RH, Score=526, Expect=0.0]} {RNA1509_13164, RNA1509_25488} {RNA1310_10920, RNA1509_13164, RNA1509_25488} {RNA1509_13164, RNA1509_25488, RNA815_2704.1}

Mlig455_010215 {REF} {Length: 2109} {TRANSSPLICED} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=138.3]; Serine-threonine protein phosphatase N-terminal domain [PF16891.7, score=19.1]} {Human: ENSG00000149923, PPP4C, protein phosphatase 4 catalytic subunit, [RH, Score=558, Expect=0.0]} {Mouse: ENSMUSG00000030697, Ppp4c, protein phosphatase 4, catalytic subunit, [RH, Score=558, Expect=0.0]} {Dmel: FBgn0023177, Pp4-19C, Protein phosphatase 19C, [RH, Score=536, Expect=0.0]} {Celegans: WBGene00004085, pph-4.1, Serine/threonine-protein phosphatase 4 catalytic subunit 1, [RH, Score=514, Expect=0.0]} {Smed: dd_Smed_v6_1324_0_1, dd_Smed_v6_1324_0_1, [RH, Score=525, Expect=0.0]} {RNA1509_13164} {RNA1310_10920} {RNA815_2704.1}
10. MligTC455_06090 223 4.65 Mlig455_037743

Neo: -

Age: Down-Up-Up

 0.964 - - - - 0.964 - Mlig455_037743 {REF} {Length: 1087} {RNA1509_10108} {RNA1310_12853.1} {RNA815_29647}
11. MligTC455_16292 176 3.67 Mlig455_029213

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.543

Region-enriched R2: 3.505/0.04173

 PRKAR2B 0.964 - - - - 0.964 - Mlig455_029213 {REF} {Length: 1890} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=75.9]} {Human: ENSG00000005249, PRKAR2B, protein kinase cAMP-dependent type II regulatory subunit beta, [Score=51.6, Expect=1e-06]; ENSG00000284096, PRKAR2B, protein kinase cAMP-dependent type II regulatory subunit beta, [Score=51.6, Expect=1e-06]} {Mouse: ENSMUSG00000002997, Prkar2b, protein kinase, cAMP dependent regulatory, type II beta, [Score=51.2, Expect=1e-06]} {Dmel: FBgn0022382, Pka-R2, Protein kinase, cAMP-dependent, regulatory subunit type 2, [Score=52.8, Expect=2e-07]} {Smed: dd_Smed_v6_14355_0_1, dd_Smed_v6_14355_0_1, [Score=104, Expect=2e-24]} {RNA1509_14151} {RNA1310_17181} {RNA815_7262}
12. MligTC455_16293 241 5.01 Mlig455_029235

Neo: Irradiation

Age: Up-Down-Down

 0.964 - - - - 0.964 - Mlig455_029235 {REF} {Length: 1804} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=61.3]} {Smed: dd_Smed_v6_14355_0_1, dd_Smed_v6_14355_0_1, [Score=81.3, Expect=8e-17]} {RNA1509_14151} {RNA1310_17181} {RNA815_7262}
13. MligTC455_22617 36 0.76 Mlig455_041097

Neo: -

Age: Up-Down-Down

 0.964 - - - - 0.964 - Mlig455_041097 {REF} {Length: 3480} {Smed: dd_Smed_v6_28678_0_1, dd_Smed_v6_28678_0_1, [RH, Score=77.0, Expect=7e-15]} {RNA1310_21449}
14. MligTC455_43078 241 5.03 Mlig455_050254

Neo: Irradiation

Age: -

 0.963 - - - - 0.963 - Mlig455_050254 {REF} {Length: 1683} {RNA1509_54086} {RNA1310_5535, RNA1509_54086} {RNA1509_54086, RNA815_6435}
15. MligTC455_23415 50 1.03 Mlig455_016621

Neo: -

Age: Up-Down-Down

Region-enriched R2: 5.308/0.00531

 0.962 - - - - 0.962 - Mlig455_016621 {REF} {Length: 6929} {Pfam: Pao retrotransposon peptidase [PF05380.15, score=182.3]; Family of unknown function (DUF5641) [PF18701.3, score=110.2]; Protein of unknown function (DUF1759) [PF03564.17, score=42.8]; Integrase zinc binding domain [PF17921.3, score=42.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=23.2]} {Smed: dd_Smed_v6_22202_0_1, dd_Smed_v6_22202_0_1, [Score=120, Expect=4e-31]} {RNA1509_14736} {RNA1310_64.1, RNA1509_14736} {RNA1509_14736, RNA815_7101}
16. MligTC455_24036 38 0.8 Mlig455_033348

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_033348 {REF} {Length: 1827} {TRANSSPLICED} {Pfam: PAXIP1-associated-protein-1 C term PTIP binding protein [PF15364.8, score=19.1]} {RNA1509_59545} {RNA1310_63661} {RNA815_38848.2}
17. MligTC455_36937 44 0.91 Mlig455_066629

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_066629 {REF} {Length: 1530} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_54802} {RNA815_64986}
18. MligTC455_40777 56 1.17 Mlig455_041571

Neo: -

Age: -

Region-enriched R5: 3.787/0.03010

 0.962 - - - - 0.962 - Mlig455_041571 {REF} {Length: 726} {NoTransDecoderORF} {RNA1509_36146} {RNA1310_46869} {RNA815_14926.1}
19. MligTC455_17114 529 11.02 Mlig455_014367

Neo: -

Age: Up-Down-Down

 0.961 - - - - 0.961 - Mlig455_014367 {REF} {Length: 589} {NoTransDecoderORF} {RNA1509_12926} {RNA1310_21056} {RNA815_39556}
20. MligTC455_23369 566 11.79 Mlig455_065621

Neo: -

Age: Up-Down-Up

Region-enriched R2: 2.701/0.03747

 HYDIN 0.959 - - - - 0.959 - Mlig455_065621 {REF} {Length: 7684} {Pfam: Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin [PF15780.7, score=100.7]; Transmembrane protein 131-like N-terminal [PF12371.10, score=42.4]; Protein of unknown function (DUF1573) [PF07610.13, score=39.4]; MYCBP-associated protein family [PF14646.8, score=33.6]; MSP (Major sperm protein) domain [PF00635.28, score=22.6]} {Human: ENSG00000283022, HYDIN, HYDIN, axonemal central pair apparatus protein, [Score=1239, Expect=0.0]; ENSG00000157423, HYDIN, HYDIN, axonemal central pair apparatus protein, [Score=1239, Expect=0.0]} {Mouse: ENSMUSG00000059854, Hydin, HYDIN, axonemal central pair apparatus protein, [Score=1286, Expect=0.0]} {Smed: dd_Smed_v6_7302_1_1, dd_Smed_v6_7302_1_1, [Score=1395, Expect=0.0]} {RNA1509_30047} {RNA1310_26.1} {RNA815_225}
21. MligTC455_40576 41 0.84 Mlig455_055992

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_055992 {REF} {Length: 1712} {Pfam: Bacterial protein of unknown function (DUF948) [PF06103.13, score=23.6]; IRSp53/MIM homology domain [PF08397.13, score=21.5]} {RNA1509_35632} {RNA1310_13000.1} {RNA815_16057}
22. MligTC455_48558 141 2.94 Mlig455_046385

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_046385 {REF} {Length: 1458} {RNA1310_43065} {RNA815_11099}
23. MligTC455_52292 114 2.37 Mlig455_018142

Neo: -

Age: Down-Up-Down

 0.958 - - - - 0.958 - Mlig455_018142 {REF} {Length: 3358} {RNA1509_41463} {RNA1310_26044.1} {RNA815_6737}
24. MligTC455_04154 8 0.16 Mlig455_065272

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_065272 {REF} {Length: 2413} {RNA1509_33387} {RNA1310_38614} {RNA815_2054.1}
25. MligTC455_07720 6 0.12 Mlig455_061015

Neo: -

Age: -

 ZIC5 0.957 - - - - 0.957 - Mlig455_061015 {REF} {Length: 576} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=39.1]; Zinc-finger double domain [PF13465.8, score=33.8]; C2H2-type zinc finger [PF13894.8, score=24.2]} {Human: ENSG00000139800, ZIC5, Zic family member 5, [Score=97.1, Expect=7e-25]; ENSG00000174963, ZIC4, Zic family member 4, [Score=95.5, Expect=1e-24]; ENSG00000156925, ZIC3, Zic family member 3, [Score=95.1, Expect=3e-24]; ENSG00000043355, ZIC2, Zic family member 2, [Score=94.7, Expect=5e-24]; ENSG00000152977, ZIC1, Zic family member 1, [Score=93.6, Expect=8e-24]} {Mouse: ENSMUSG00000041703, Zic5, zinc finger protein of the cerebellum 5, [Score=97.1, Expect=5e-25]; ENSMUSG00000036972, Zic4, zinc finger protein of the cerebellum 4, [Score=95.5, Expect=5e-25]; ENSMUSG00000067860, Zic3, zinc finger protein of the cerebellum 3, [Score=95.1, Expect=1e-25]; ENSMUSG00000061524, Zic2, zinc finger protein of the cerebellum 2, [Score=94.7, Expect=3e-24]; ENSMUSG00000032368, Zic1, zinc finger protein of the cerebellum 1, [Score=93.6, Expect=5e-24]} {Dmel: FBgn0003002, opa, odd paired, [Score=96.7, Expect=5e-25]} {Celegans: WBGene00004335, ref-2, REgulator of Fusion, [Score=93.2, Expect=1e-24]} {Smed: dd_Smed_v6_22585_0_1, dd_Smed_v6_22585_0_1, [Score=100, Expect=8e-27]} {RNA1310_23362} {RNA815_19034}
26. MligTC455_17061 25 0.52 Mlig455_059363

Neo: -

Age: -

Regeneration-enriched R4: 8.762
Regeneration-enriched R3: 8.244
Regeneration-enriched R5: 7.052
Regeneration-enriched R2: 6.670

 0.957 - - - - 0.957 - Mlig455_059363 {REF} {Length: 588} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_51606} {RNA1310_24468.1} {RNA815_39459}
27. MligTC455_18549 35 0.72 Mlig455_003836

Neo: -

Age: Up-Down-Down

 0.957 - - - - 0.957 - Mlig455_003836 {REF} {Length: 1990} {RNA1509_32165} {RNA1310_13450} {RNA815_5462.1}
28. MligTC455_19456 34 0.7 Mlig455_038677

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_038677 {REF} {Length: 1621} {TRANSSPLICED} {Smed: dd_Smed_v6_15258_0_1, dd_Smed_v6_15258_0_1, [Score=49.3, Expect=4e-07]} {RNA1310_112748}
29. MligTC455_30679 25 0.52 Mlig455_019397, Mlig455_056063, Mlig455_061587

Neo: -

Age: -

Region-enriched R4: 1.545/0.03801

 NYNRIN 0.957 - - - - 0.957 -

Mlig455_019397 {REF} {Length: 1298} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=38.6]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=88.6, Expect=3e-19]} {RNA1509_29748} {RNA1310_1140.1} {RNA815_993.1}

Mlig455_056063 {REF} {Length: 4562} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=124.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=119.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=69.9]; Integrase zinc binding domain [PF17921.3, score=66.8]; Integrase core domain [PF00665.28, score=50.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=30.3]; Aspartyl protease [PF13650.8, score=28.2]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=95.5, Expect=5e-19]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=99.8, Expect=2e-20]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=447, Expect=3e-137]} {RNA1509_29748} {RNA1310_870} {RNA815_993.1}

Mlig455_061587 {REF} {Length: 3872} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=120.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=114.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=70.0]; Integrase zinc binding domain [PF17921.3, score=67.0]; Integrase core domain [PF00665.28, score=50.9]; gag-polyprotein putative aspartyl protease [PF13975.8, score=30.4]; Aspartyl protease [PF13650.8, score=28.3]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=96.7, Expect=2e-19]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=100, Expect=8e-21]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=446, Expect=1e-137]} {RNA1509_29748} {RNA1310_870} {RNA815_993.1}
30. MligTC455_37753 410 8.54 Mlig455_054901, Mlig455_065604

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.475

Region-enriched R2: 4.050/0.00069

 0.957 - - - - 0.957 -

Mlig455_054901 {REF} {Length: 2445} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=23.2]} {Celegans: WBGene00010315, F59B2.13, Putative G-protein coupled receptor F59B2.13, [RH, Score=58.5, Expect=6e-09]} {Smed: dd_Smed_v6_28468_0_1, dd_Smed_v6_28468_0_1, [Score=88.6, Expect=1e-18]} {RNA1509_30384} {RNA1310_34563.1} {RNA815_18979}

Mlig455_065604 {REF} {Length: 2387} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=22.9]} {Celegans: WBGene00010315, F59B2.13, Putative G-protein coupled receptor F59B2.13, [Score=55.1, Expect=9e-08]} {Smed: dd_Smed_v6_28468_0_1, dd_Smed_v6_28468_0_1, [Score=85.5, Expect=2e-17]} {RNA1509_30384} {RNA1310_34563.1} {RNA815_18979}
31. MligTC455_57697 4 0.08 Mlig455_008943

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_008943 {REF} {Length: 529} {NoTransDecoderORF} {RNA1509_54240} {RNA1310_47176} {RNA815_26049}
32. MligTC455_07828 23 0.48 Mlig455_006234, Mlig455_006295

Neo: -

Age: -

 KCNIP4 0.956 - - - - 0.956 -

Mlig455_006234 {REF} {Length: 2640} {Pfam: EF-hand domain pair [PF13499.8, score=42.8]; EF hand [PF00036.34, score=34.6]; EF-hand domain [PF13405.8, score=30.8]; EF-hand domain pair [PF13833.8, score=22.5]; EF hand [PF13202.8, score=22.3]} {Human: ENSG00000185774, KCNIP4, potassium voltage-gated channel interacting protein 4, [Score=126, Expect=2e-33]} {Mouse: ENSMUSG00000029088, Kcnip4, Kv channel interacting protein 4, [Score=126, Expect=1e-33]} {Dmel: FBgn0265595, CG44422, [Score=117, Expect=3e-29]} {Celegans: WBGene00003565, ncs-3, Neuronal Calcium Sensor family, [Score=103, Expect=2e-25]} {Smed: dd_Smed_v6_9727_0_1, dd_Smed_v6_9727_0_1, [Score=116, Expect=5e-30]} {RNA1310_69087} {RNA815_35381}

Mlig455_006295 {REF} {Length: 1955} {Pfam: EF-hand domain pair [PF13499.8, score=21.4]; EF-hand domain pair [PF13833.8, score=20.9]; EF hand [PF00036.34, score=20.8]} {Dmel: FBgn0083228, Frq2, Frequenin 2, [Score=53.1, Expect=4e-09]} {RNA1310_69087} {RNA815_35381}
33. MligTC455_09119 19 0.39 Mlig455_018709, Mlig455_046202, Mlig455_068557

Neo: -

Age: -

 0.956 - - - - 0.956 -

Mlig455_018709 {REF} {Length: 149} {NoTransDecoderORF} {RNA1310_130271}

Mlig455_046202 {REF} {Length: 140} {NoTransDecoderORF} {RNA1310_130271}

Mlig455_068557 {REF} {Length: 288} {NoTransDecoderORF} {RNA1310_130271}
34. MligTC455_26260 281 5.86 Mlig455_033712

Neo: -

Age: Up-Down-Down

 0.956 - - - - 0.956 - Mlig455_033712 {REF} {Length: 4818} {Pfam: Bacterial transferase hexapeptide (six repeats) [PF00132.26, score=21.8]} {RNA1509_26340} {RNA1310_17276.1} {RNA815_2054.1}
35. MligTC455_34071 49 1.03 Mlig455_062246

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_062246 {REF} {Length: 1821} {NoTransDecoderORF} {RNA1509_60021} {RNA1310_45304} {RNA815_29039.1}
36. MligTC455_53362 25 0.51 Mlig455_042367

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_042367 {REF} {Length: 186} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=86.3]; Endonuclease-reverse transcriptase [PF14529.8, score=45.3]} {Smed: dd_Smed_v6_16441_0_1, dd_Smed_v6_16441_0_1, [Score=71.6, Expect=8e-13]} {RNA1509_35522} {RNA1310_1411.2} {RNA815_8870}
37. MligTC455_18127 401 8.35 Mlig455_023755, Mlig455_023767, Mlig455_023780

Neo: Irradiation

Age: -

Region-enriched R4: 2.984/0.01492

 0.955 - - - - 0.955 -

Mlig455_023755 {REF} {Length: 1717} {RNA1509_40513} {RNA1310_43090} {RNA815_32441}

Mlig455_023767 {REF} {Length: 2896} {RNA1509_40513} {RNA1310_43090, RNA1509_40513} {RNA1509_40513, RNA815_32441}

Mlig455_023780 {REF} {Length: 2579} {RNA1509_40513} {RNA1310_43090} {RNA815_32441}
38. MligTC455_43961 30 0.62 Mlig455_027626

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_027626 {REF} {Length: 602} {Pfam: PAN domain [PF00024.28, score=26.5]; PAN domain [PF14295.8, score=21.8]} {RNA1310_35396.1} {RNA815_23500}
39. MligTC455_47952 92 1.91 Mlig455_021022

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_021022 {REF} {Length: 2775} {NoTransDecoderORF} {RNA1509_55970} {RNA1310_14089.1} {RNA815_36615}
40. MligTC455_50045 52 1.09 Mlig455_054573

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_054573 {REF} {Length: 2684} {NoTransDecoderORF} {RNA1509_48232} {RNA1310_60087} {RNA815_14770.1}
41. MligTC455_03172 25 0.52 Mlig455_016132, Mlig455_036881

Neo: -

Age: Down-Up-Down

 0.954 - - - - 0.954 -

Mlig455_016132 {REF} {Length: 1316} {NoTransDecoderORF} {RNA1509_8439} {RNA1310_1034.2} {RNA815_62940}

Mlig455_036881 {REF} {Length: 2951} {RNA1509_8439} {RNA1310_1034.1} {RNA815_502.1}
42. MligTC455_17255 12 0.24 Mlig455_013836

Neo: -

Age: Up-Down-Up

 0.954 - - - - 0.954 - Mlig455_013836 {REF} {Length: 3587} {TRANSSPLICED} {RNA1509_17462, RNA1509_24953} {RNA1310_485.1, RNA1509_24953} {RNA1509_24953, RNA815_2772.1}
43. MligTC455_37241 13 0.26 Mlig455_051006

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_051006 {REF} {Length: 447} {RNA1310_129992} {RNA815_38794.1}
44. MligTC455_02438 147 3.06 Mlig455_003956, Mlig455_027591, Mlig455_039496, Mlig455_054510

Neo: -

Age: Down-Up-Down

 PGBD4 0.953 - - - - 0.953 -

Mlig455_003956 {REF} {Length: 311} {NoTransDecoderORF} {RNA1509_37400} {RNA1310_2776}

Mlig455_027591 {REF} {Length: 409} {NoTransDecoderORF} {RNA1509_28307} {RNA1310_2776} {RNA815_4739}

Mlig455_039496 {REF} {Length: 2868} {Pfam: Transposase IS4 [PF13843.8, score=210.5]; Transposase DDE domain [PF01609.23, score=18.8]} {Human: ENSG00000182405, PGBD4, piggyBac transposable element derived 4, [Score=173, Expect=1e-46]} {Smed: dd_Smed_v6_48522_0_1, dd_Smed_v6_48522_0_1, [Score=108, Expect=1e-26]} {RNA1509_28307, RNA1509_37400} {RNA1310_2776, RNA1509_28307, RNA1509_37400} {RNA1509_28307, RNA1509_37400, RNA815_26100}

Mlig455_054510 {REF} {Length: 581} {NoTransDecoderORF} {RNA1509_28307} {RNA1310_2776} {RNA815_4739}
45. MligTC455_03361 23 0.49 Mlig455_045846

Neo: -

Age: -

Regeneration-enriched R4: 8.309
Regeneration-enriched R3: 7.698
Regeneration-enriched R5: 6.907
Regeneration-enriched R2: 5.726

 0.953 - - - - 0.953 - Mlig455_045846 {REF} {Length: 525} {RNA1310_134422} {RNA815_64754}
46. MligTC455_19826 31 0.65 Mlig455_063810

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_063810 {REF} {Length: 3558} {TRANSSPLICED} {RNA1509_26683} {RNA1310_16438} {RNA815_37556}
47. MligTC455_22851 17 0.35 Mlig455_032044, Mlig455_033467

Neo: Germline

Age: -

 0.953 - - - - 0.953 -

Mlig455_032044 {REF} {Length: 2628} {RNA1509_14849} {RNA1310_2829} {RNA815_37599}

Mlig455_033467 {REF} {Length: 709} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=88.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=85.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=61.2]; Integrase zinc binding domain [PF17921.3, score=46.3]; Integrase core domain [PF00665.28, score=31.5]; Zinc knuckle [PF00098.25, score=18.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=230, Expect=7e-62]} {RNA1509_14849} {RNA1310_1535} {RNA815_664}
48. MligTC455_44126 14 0.28 Mlig455_055378

Neo: -

Age: Down-Up-Down

 TTLL13P 0.953 - - - - 0.953 - Mlig455_055378 {REF} {Length: 3061} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=269.8]; YheC/D like ATP-grasp [PF14398.8, score=24.7]; Sugar-transfer associated ATP-grasp [PF14397.8, score=20.6]} {Human: ENSG00000213471, TTLL13P, tubulin tyrosine ligase like 13, pseudogene, [RH, Score=564, Expect=0.0]} {Mouse: ENSMUSG00000045467, Ttll13, tubulin tyrosine ligase-like family, member 13, [RH, Score=580, Expect=0.0]} {Dmel: FBgn0039501, CG5987, [Score=444, Expect=1e-143]} {Celegans: WBGene00019230, ttll-11, Tubulin Tyrosine Ligase Like, [Score=206, Expect=2e-56]} {Smed: dd_Smed_v6_8131_0_1, dd_Smed_v6_8131_0_1, [Score=679, Expect=0.0]} {RNA1509_17118} {RNA1310_6646.1} {RNA815_17546}
49. MligTC455_49472 445 9.27 Mlig455_054628, Mlig455_071124

Neo: -

Age: -

 STUB1 0.953 - - - - 0.953 -

Mlig455_054628 {REF} {Length: 2138} {TRANSSPLICED} {Pfam: U-box domain [PF04564.17, score=93.3]; CHIP N-terminal tetratricopeptide repeat domain [PF18391.3, score=70.5]; Tetratricopeptide repeat [PF00515.30, score=54.4]; Tetratricopeptide repeat [PF07719.19, score=51.7]; Tetratricopeptide repeat [PF13424.8, score=39.1]; TPR repeat [PF13414.8, score=36.6]; Tetratricopeptide repeat [PF13181.8, score=32.5]; Tetratricopeptide repeat [PF13432.8, score=32.0]; Anaphase-promoting complex, cyclosome, subunit 3 [PF12895.9, score=27.4]; Tetratricopeptide repeat [PF13176.8, score=25.8]; Tetratricopeptide repeat [PF13428.8, score=25.5]; Tetratricopeptide repeat [PF13374.8, score=22.6]; Tetratricopeptide repeat [PF14559.8, score=21.6]; Tetratricopeptide repeat [PF13174.8, score=21.4]; Tetratricopeptide repeat [PF13371.8, score=18.9]} {Human: ENSG00000103266, STUB1, STIP1 homology and U-box containing protein 1, [RH, Score=295, Expect=2e-99]} {Mouse: ENSMUSG00000039615, Stub1, STIP1 homology and U-Box containing protein 1, [RH, Score=293, Expect=9e-99]} {Dmel: FBgn0027052, STUB1, STIP1 homology and U-box containing protein 1, [RH, Score=305, Expect=4e-104]} {Celegans: WBGene00000500, chn-1, C-term of Hsp70-iNteracting protein (CHIP family); Hsp70-interacting protein, [RH, Score=216, Expect=2e-69]} {Smed: dd_Smed_v6_2121_0_1, dd_Smed_v6_2121_0_1, [RH, Score=291, Expect=7e-99]} {RNA1509_17879, RNA1509_56772} {RNA1310_28517, RNA1509_17879, RNA1509_56772} {RNA1509_17879, RNA1509_56772, RNA815_11702}

Mlig455_071124 {REF} {Length: 2050} {TRANSSPLICED} {Pfam: U-box domain [PF04564.17, score=87.6]; Tetratricopeptide repeat [PF00515.30, score=50.5]; CHIP N-terminal tetratricopeptide repeat domain [PF18391.3, score=48.1]; Tetratricopeptide repeat [PF07719.19, score=43.0]; Tetratricopeptide repeat [PF13424.8, score=37.8]; Tetratricopeptide repeat [PF13181.8, score=30.6]; TPR repeat [PF13414.8, score=26.5]; Anaphase-promoting complex, cyclosome, subunit 3 [PF12895.9, score=25.5]; Tetratricopeptide repeat [PF13432.8, score=24.6]; Tetratricopeptide repeat [PF13176.8, score=22.9]; Tetratricopeptide repeat [PF13428.8, score=20.1]; Tetratricopeptide repeat [PF13174.8, score=19.2]} {Human: ENSG00000103266, STUB1, STIP1 homology and U-box containing protein 1, [Score=244, Expect=1e-79]} {Mouse: ENSMUSG00000039615, Stub1, STIP1 homology and U-Box containing protein 1, [Score=242, Expect=4e-79]} {Dmel: FBgn0027052, STUB1, STIP1 homology and U-box containing protein 1, [Score=252, Expect=2e-83]} {Celegans: WBGene00000500, chn-1, C-term of Hsp70-iNteracting protein (CHIP family); Hsp70-interacting protein, [Score=197, Expect=4e-62]} {Smed: dd_Smed_v6_2121_0_1, dd_Smed_v6_2121_0_1, [Score=253, Expect=7e-84]} {RNA1509_56772} {RNA1310_28517} {RNA815_11702}
50. MligTC455_31862 185 3.86 Mlig455_010898

Neo: -

Age: Up-Down-Down

 HCRTR1 0.952 - - - - 0.952 - Mlig455_010898 {REF} {Length: 3607} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=152.1]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=28.5]} {Human: ENSG00000121764, HCRTR1, hypocretin receptor 1, [Score=100, Expect=2e-22]; ENSG00000110148, CCKBR, cholecystokinin B receptor, [Score=100, Expect=2e-22]; ENSG00000186867, QRFPR, pyroglutamylated RFamide peptide receptor, [Score=96.3, Expect=4e-21]; ENSG00000163394, CCKAR, cholecystokinin A receptor, [Score=96.3, Expect=4e-21]; ENSG00000162009, SSTR5, somatostatin receptor 5, [Score=95.9, Expect=3e-21]} {Mouse: ENSMUSG00000028778, Hcrtr1, hypocretin (orexin) receptor 1, [Score=108, Expect=1e-25]} {Dmel: FBgn0038880, SIFaR, SIFamide receptor, [Score=95.5, Expect=9e-21]} {Celegans: WBGene00013187, npr-34, NeuroPeptide Receptor family, [RH, Score=131, Expect=7e-33]} {Smed: dd_Smed_v6_56182_0_1, dd_Smed_v6_56182_0_1, [Score=135, Expect=2e-37]} {RNA1509_56148} {RNA1310_5450.1} {RNA815_7136.1}
51. MligTC455_07982 16 0.34 Mlig455_028741

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_028741 {REF} {Length: 1430} {Dmel: FBgn0085446, CG34417, [Score=57.0, Expect=2e-08]} {Celegans: WBGene00009362, F33E2.6, [Score=57.0, Expect=1e-08]} {RNA1509_44411} {RNA1310_56745} {RNA815_14439.1}
52. MligTC455_10704 11 0.24 Mlig455_011667

Neo: -

Age: Up-Down-Down

 0.951 - - - - 0.951 - Mlig455_011667 {REF} {Length: 1499} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=28.2]; Aspartyl protease [PF13650.8, score=20.0]} {RNA1509_54157} {RNA1310_5940.1} {RNA815_7551.1}
53. MligTC455_12812 58 1.21 Mlig455_027688, Mlig455_047749

Neo: -

Age: Up-Down-Down

 0.951 - - - - 0.951 -

Mlig455_027688 {REF} {Length: 2289} {Pfam: Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=18.6]} {RNA1509_59038} {RNA1310_64936.1, RNA1509_59038}

Mlig455_047749 {REF} {Length: 2332} {RNA1509_59038} {RNA1310_67234}
54. MligTC455_16356 24 0.5 Mlig455_022161

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.557

Region-enriched R4: 5.112/0.01161

 0.951 - - - - 0.951 - Mlig455_022161 {REF} {Length: 4044} {RNA1509_57484} {RNA1310_40819} {RNA815_38037}
55. MligTC455_18899 25 0.51 Mlig455_022106

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_022106 {REF} {Length: 1792} {Pfam: F5/8 type C domain [PF00754.27, score=28.8]} {Smed: dd_Smed_v6_71482_0_1, dd_Smed_v6_71482_0_1, [Score=62.0, Expect=1e-11]} {RNA1310_41523} {RNA815_37841}
56. MligTC455_23328 273 5.68 Mlig455_005340

Neo: -

Age: -

 RWDD1 0.951 - - - - 0.951 - Mlig455_005340 {REF} {Length: 3483} {Pfam: RWD domain [PF05773.24, score=71.6]; DRG Family Regulatory Proteins, Tma46 [PF16543.7, score=29.1]} {Human: ENSG00000111832, RWDD1, RWD domain containing 1, [RH, Score=142, Expect=5e-41]} {Mouse: ENSMUSG00000019782, Rwdd1, RWD domain containing 1, [RH, Score=150, Expect=2e-44]} {Dmel: FBgn0039163, CG5515, [RH, Score=114, Expect=2e-30]} {Celegans: WBGene00012037, T26E3.4, [RH, Score=73.9, Expect=1e-15]} {Smed: dd_Smed_v6_8892_0_1, dd_Smed_v6_8892_0_1, [RH, Score=100, Expect=2e-25]} {RNA1509_11829} {RNA1310_16178.1, RNA1509_11829} {RNA1509_11829, RNA815_18505}
57. MligTC455_27079 28 0.58 Mlig455_022102

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_022102 {REF} {Length: 1305} {RNA1509_44223} {RNA1310_77029} {RNA815_64986}
58. MligTC455_29878 24 0.49 Mlig455_032877

Neo: -

Age: -

 PKDREJ 0.951 - - - - 0.951 - Mlig455_032877 {REF} {Length: 2692} {Pfam: REJ domain [PF02010.17, score=190.5]; Polycystin cation channel [PF08016.14, score=164.6]; Ion transport protein [PF00520.33, score=37.9]; PLAT/LH2 domain [PF01477.25, score=29.6]; PKD domain [PF00801.22, score=29.0]} {Human: ENSG00000130943, PKDREJ, polycystin family receptor for egg jelly, [Score=171, Expect=1e-41]} {Mouse: ENSMUSG00000052496, Pkdrej, polycystin (PKD) family receptor for egg jelly, [Score=146, Expect=2e-34]; ENSMUSG00000034416, Pkd1l2, polycystic kidney disease 1 like 2, [Score=140, Expect=2e-32]} {Dmel: FBgn0040333, brv3, brivido-3, [Score=68.2, Expect=7e-11]} {Celegans: WBGene00003058, lov-1, Location of vulva defective 1, [Score=89.7, Expect=2e-17]} {Smed: dd_Smed_v6_10962_0_1, dd_Smed_v6_10962_0_1, [Score=249, Expect=7e-66]} {RNA1310_24455} {RNA815_11208}
59. MligTC455_41660 162 3.38 Mlig455_054021

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_054021 {REF} {Length: 441} {NoTransDecoderORF} {RNA1509_37967} {RNA1310_6299.1} {RNA815_1994.1}
60. MligTC455_02468 7 0.15 Mlig455_058570

Neo: Irradiation

Age: -

 0.95 - - - - 0.950 - Mlig455_058570 {REF} {Length: 666} {NoTransDecoderORF} {RNA1509_25975} {RNA1310_29152} {RNA815_54870}
61. MligTC455_05081 10 0.2 Mlig455_004977

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_004977 {REF} {Length: 769} {NoTransDecoderORF} {RNA1310_99788} {RNA815_6347.1}
62. MligTC455_06768 12 0.25 Mlig455_009616

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_009616 {REF} {Length: 322} {NoTransDecoderORF}
63. MligTC455_15930 17 0.36 Mlig455_047268

Neo: -

Age: -

Regeneration-downregulated R5: -3.478

Regeneration-depleted R5: -3.478

 0.95 - - - - 0.950 - Mlig455_047268 {REF} {Length: 572} {NoTransDecoderORF} {RNA1310_84082}
64. MligTC455_17237 20 0.42 Mlig455_045097

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_045097 {REF} {Length: 1126} {NoTransDecoderORF} {RNA1310_82726} {RNA815_53241.1}
65. MligTC455_25077 91 1.89 Mlig455_041895, Mlig455_041977

Neo: -

Age: Up-Down-Up

 0.95 - - - - 0.950 -

Mlig455_041895 {REF} {Length: 3255} {tRNA: Val(CAC),pseudo, score=24.7} {RNA1509_40878} {RNA1310_11170.1, RNA1509_40878} {RNA1509_40878, RNA815_18058.2}

Mlig455_041977 {REF} {Length: 2618} {tRNA: Val(CAC),pseudo, score=25.5} {RNA1509_40878} {RNA1310_11170.1} {RNA815_18058.2}
66. MligTC455_47838 4 0.07 Mlig455_045335

Neo: -

Age: -

 SLC8A1 0.95 - - - - 0.950 - Mlig455_045335 {REF} {Length: 3293} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=162.5]; Calx-beta domain [PF03160.16, score=108.0]} {Human: ENSG00000183023, SLC8A1, solute carrier family 8 member A1, [Score=426, Expect=1e-134]; ENSG00000100678, SLC8A3, solute carrier family 8 member A3, [Score=422, Expect=2e-133]} {Mouse: ENSMUSG00000079055, Slc8a3, solute carrier family 8 (sodium/calcium exchanger), member 3, [Score=424, Expect=5e-134]; ENSMUSG00000030376, Slc8a2, solute carrier family 8 (sodium/calcium exchanger), member 2, [Score=416, Expect=3e-131]; ENSMUSG00000054640, Slc8a1, solute carrier family 8 (sodium/calcium exchanger), member 1, [Score=409, Expect=3e-128]} {Dmel: FBgn0013995, Calx, Na/Ca-exchange protein, [Score=384, Expect=7e-119]} {Celegans: WBGene00003566, ncx-1, Na/Ca eXchangers; Sodium-calcium exchanger, [Score=395, Expect=1e-123]} {Smed: dd_Smed_v6_3303_0_1, dd_Smed_v6_3303_0_1, [Score=385, Expect=6e-120]} {RNA1509_15759, RNA1509_50628} {RNA1310_3942.1, RNA1509_15759, RNA1509_50628} {RNA1509_15759, RNA1509_50628, RNA815_1046.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA