TomoSeq data search

Data search

Results for MligTC455_31215

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_31215

39

0.80

Mlig455_001130

Neo: -

Age: -

Regeneration-upregulated R5: 6.163

Regeneration-enriched R5: 6.163

Mlig455_001130 {REF} {Length: 3151} {RNA1310_23510} {RNA815_21831}

Cumulative graph for MligTC455_31215

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-8.267	0.891	0.99967	1.00000
RegionR2	6.568	0.891	0.99982	1.00000
RegionR3	1.98	0.891	0.99990	1.00000
RegionR4	-4.682	0.891	0.99983	1.00000
RegionR5	0.156	0.891	0.99996	1.00000
RegionR6	1.947	0.891	0.99992	1.00000
RegionR7	1.466	0.891	0.99995	1.00000
RegionR8	0.832	0.891	0.99994	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	8.444	0.891	0.99992	1.00000
RegenerationR2	4.371	0.891	0.00094	0.04496
RegenerationR3	6.777	0.891	0.00023	0.01986
RegenerationR4	6.372	0.891	0.00035	0.01693
RegenerationR5	6.163	0.891	0.00004	0.00758	Specific for R5: 6.163
RegenerationR6	4.969	0.891	0.00292	0.06260
RegenerationBL	5.999	0.891	0.00221	0.03864
RegenerationTP	1.869	0.891	0.99986	1.00000

Genes with expression patterns similar to MligTC455_31215

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_31215	39	0.8	Mlig455_001130	Neo: - Age: - Regeneration-upregulated R5: 6.163 Regeneration-enriched R5: 6.163		2	-	-	-	-	1.000	1.000	Mlig455_001130 {REF} {Length: 3151} {RNA1310_23510} {RNA815_21831}
2.	MligTC455_00715	24	0.51	Mlig455_060639	Neo: - Age: -		1.833	-	-	-	-	0.857	0.976	Mlig455_060639 {REF} {Length: 802} {NoTransDecoderORF} {RNA1509_54585} {RNA1310_91888} {RNA815_7856.1}
3.	MligTC455_52693	53	1.09	Mlig455_010844	Neo: - Age: -		1.734	-	-	-	-	0.778	0.956	Mlig455_010844 {REF} {Length: 2348} {NoTransDecoderORF} {RNA1310_45390} {RNA815_62908}
4.	MligTC455_11319	34	0.7	Mlig455_054806	Neo: - Age: -		0.975	-	-	-	-	-	0.975	Mlig455_054806 {REF} {Length: 275} {NoTransDecoderORF}
5.	MligTC455_07600	29	0.6	Mlig455_060595	Neo: - Age: -		0.973	-	-	-	-	-	0.973	Mlig455_060595 {REF} {Length: 660} {NoTransDecoderORF} {RNA1310_91888}
6.	MligTC455_16560	215	4.47	Mlig455_050739	Neo: - Age: -	C9orf116	0.971	-	-	-	-	-	0.971	Mlig455_050739 {REF} {Length: 1016} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4490) [PF14892.8, score=113.1]} {Human: ENSG00000160345, C9orf116, chromosome 9 open reading frame 116, [RH, Score=81.6, Expect=1e-20]} {Mouse: ENSMUSG00000026831, 1700007K13Rik, RIKEN cDNA 1700007K13 gene, [RH, Score=80.5, Expect=5e-20]} {Dmel: FBgn0083943, CG34107, [Score=64.3, Expect=2e-14]} {Smed: dd_Smed_v6_49903_0_1, dd_Smed_v6_49903_0_1, [RH, Score=75.5, Expect=5e-18]} {RNA1509_25772} {RNA1310_28661.1, RNA1509_25772} {RNA1509_25772, RNA815_31506}
7.	MligTC455_47094	240	5.01	Mlig455_014204	Neo: - Age: logFC(26M/2M)=-0.357		0.966	-	-	-	-	0.966	-	Mlig455_014204 {REF} {Length: 3346} {Smed: dd_Smed_v6_4351_0_1, dd_Smed_v6_4351_0_1, [RH, Score=238, Expect=1e-74]} {RNA1509_35661} {RNA1310_8437, RNA1509_35661} {RNA1509_35661, RNA815_15552}
8.	MligTC455_28153	87	1.82	Mlig455_023355	Neo: - Age: Down-Up-Down		0.962	-	-	-	-	-	0.962	Mlig455_023355 {REF} {Length: 2641} {Pfam: HTH domain in Mos1 transposase [PF17906.3, score=23.0]} {RNA1509_36436} {RNA1310_24275.2} {RNA815_11419.1}
9.	MligTC455_32142	40	0.84	Mlig455_006350	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-1.521	TRPM7	0.962	-	-	-	-	-	0.962	Mlig455_006350 {REF} {Length: 5802} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=55.9]; Ankyrin repeats (3 copies) [PF12796.9, score=45.8]; Ankyrin repeat [PF13606.8, score=32.5]; Ankyrin repeats (many copies) [PF13857.8, score=28.5]; Ankyrin repeat [PF00023.32, score=25.7]} {Human: ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=104, Expect=1e-21]; ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=102, Expect=6e-21]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=99.4, Expect=4e-20]; ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=99.4, Expect=3e-20]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=104, Expect=7e-22]; ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=103, Expect=1e-21]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=103, Expect=1e-21]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=92.4, Expect=2e-18]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=77.8, Expect=5e-14]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=120, Expect=1e-27]} {RNA1509_29775} {RNA1310_1317} {RNA815_8567}
10.	MligTC455_08216	34	0.7	Mlig455_009138	Neo: - Age: -		0.961	-	-	-	-	-	0.961	Mlig455_009138 {REF} {Length: 379} {NoTransDecoderORF} {RNA1310_66482.1} {RNA815_62564}
11.	MligTC455_01710	41	0.85	Mlig455_013827	Neo: - Age: -		0.96	-	-	-	-	-	0.960	Mlig455_013827 {REF} {Length: 2546} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=29.2]} {RNA1310_100507} {RNA815_49026}
12.	MligTC455_14961	39	0.82	Mlig455_048867	Neo: - Age: -		0.959	-	-	-	-	-	0.959	Mlig455_048867 {REF} {Length: 979} {NoTransDecoderORF} {RNA1310_98124}
13.	MligTC455_39057	57	1.18	Mlig455_013966	Neo: Int S/G2/M Age: -		0.958	-	-	-	-	-	0.958	Mlig455_013966 {REF} {Length: 1262} {NoTransDecoderORF} {RNA1310_104321}
14.	MligTC455_23581	225	4.69	Mlig455_015808	Neo: - Age: -	NAA60	0.957	-	-	-	-	-	0.957	Mlig455_015808 {REF} {Length: 6520} {Pfam: Acetyltransferase (GNAT) family [PF00583.27, score=46.0]; Acetyltransferase (GNAT) domain [PF13508.9, score=26.8]; FR47-like protein [PF08445.12, score=24.8]; Acetyltransferase (GNAT) domain [PF13673.9, score=23.2]} {Human: ENSG00000122390, NAA60, N(alpha)-acetyltransferase 60, NatF catalytic subunit, [RH, Score=172, Expect=3e-52]} {Mouse: ENSMUSG00000005982, Naa60, N(alpha)-acetyltransferase 60, NatF catalytic subunit, [RH, Score=171, Expect=9e-52]} {Dmel: FBgn0036039, Naa60, N(alpha)-acetyltransferase 60, [RH, Score=165, Expect=1e-49]} {Celegans: WBGene00009277, F30F8.10, [RH, Score=120, Expect=1e-32]} {Smed: dd_Smed_v6_4766_0_1, dd_Smed_v6_4766_0_1, [RH, Score=150, Expect=7e-44]} {RNA1509_25064, RNA1509_33189} {RNA1310_13963, RNA1509_25064, RNA1509_33189} {RNA1509_25064, RNA1509_33189, RNA815_11012}
15.	MligTC455_49308	26	0.55	Mlig455_055283	Neo: - Age: -	ZAN	0.956	-	-	-	-	-	0.956	Mlig455_055283 {REF} {Length: 2486} {Pfam: Glycine rich protein [PF12810.9, score=31.8]} {Human: ENSG00000146839, ZAN, zonadhesin (gene/pseudogene), [Score=65.1, Expect=4e-10]} {Mouse: ENSMUSG00000079173, Zan, zonadhesin, [Score=61.6, Expect=3e-09]} {Dmel: FBgn0053196, dpy, dumpy, [Score=51.6, Expect=3e-06]} {RNA1310_18897} {RNA815_40026}
16.	MligTC455_01654	34	0.71	Mlig455_025189	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_025189 {REF} {Length: 577} {NoTransDecoderORF} {RNA1509_16128} {RNA1310_76847} {RNA815_29511.2}
17.	MligTC455_08498	26	0.55	Mlig455_053380	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_053380 {REF} {Length: 962} {NoTransDecoderORF} {RNA1310_91082}
18.	MligTC455_50390	19	0.4	Mlig455_016912	Neo: - Age: -	CHRNA3	0.953	-	-	-	-	-	0.953	Mlig455_016912 {REF} {Length: 2944} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=242.1]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=157.8]} {Human: ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=326, Expect=7e-105]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=317, Expect=2e-101]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=317, Expect=2e-101]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=313, Expect=5e-100]} {Mouse: ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=320, Expect=8e-103]; ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=317, Expect=1e-101]; ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=315, Expect=2e-101]; ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=304, Expect=8e-97]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=347, Expect=1e-112]} {Celegans: WBGene00000060, acr-21, AcetylCholine Receptor, [RH, Score=307, Expect=1e-98]} {Smed: dd_Smed_v6_31300_0_1, dd_Smed_v6_31300_0_1, [RH, Score=539, Expect=0.0]} {RNA1310_33221} {RNA815_23594.2}
19.	MligTC455_28586	32	0.66	Mlig455_032084	Neo: - Age: Up-Down-Down		0.952	-	-	-	-	-	0.952	Mlig455_032084 {REF} {Length: 7595} {RNA1509_42521, RNA1509_44223, RNA1509_46209} {RNA1310_31499, RNA1509_42521, RNA1509_46209} {RNA1509_42521, RNA1509_46209, RNA815_19070}

Berezikov Lab - 2020-2021 © ERIBA