Data search
Results for MligTC455_32912
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_32912 | 187 | 3.89 | Mlig455_022604 | Neo: - Age: - Region-enriched R4: 2.525/0.00995 |
Mlig455_022604 {REF} {Length: 2711} {tRNA: Lys(CTT),pseudo, score=24.8} {Smed: dd_Smed_v6_8694_0_1, dd_Smed_v6_8694_0_1, [Score=47.0, Expect=9e-07]} {RNA1509_54756} {RNA1310_15352} {RNA815_19591} |
Cumulative graph for MligTC455_32912
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -3.724 | 2.559 | 0.10802 | 0.68572 | |
| RegionR2 | -1.135 | 2.559 | 0.26699 | 0.64983 | |
| RegionR3 | -0.464 | 2.559 | 0.58914 | 1.00000 | |
| RegionR4 | 2.525 | 2.559 | 0.00094 | 0.00995 | |
| RegionR5 | 1.376 | 2.559 | 0.02381 | 0.10973 | |
| RegionR6 | 0.39 | 2.559 | 0.56786 | 1.00000 | |
| RegionR7 | 0.882 | 2.559 | 0.24686 | 0.87328 | |
| RegionR8 | 0.148 | 2.559 | 0.87376 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -3.011 | 2.559 | 0.67857 | 1.00000 | |
| RegenerationR2 | -0.743 | 2.559 | 0.23894 | 0.68654 | |
| RegenerationR3 | -0.633 | 2.559 | 0.36959 | 0.78367 | |
| RegenerationR4 | -1.53 | 2.559 | 0.02554 | 0.25667 | |
| RegenerationR5 | -1.551 | 2.559 | 0.01640 | 0.22242 | |
| RegenerationR6 | -0.672 | 2.559 | 0.34004 | 0.68607 | |
| RegenerationBL | -2.855 | 2.559 | 0.00508 | 0.06632 | |
| RegenerationTP | -0.911 | 2.559 | 0.27418 | 0.72260 |
Genes with expression patterns similar to MligTC455_32912
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_32912 | 187 | 3.89 | Mlig455_022604 | Neo: - Age: - Region-enriched R4: 2.525/0.00995 |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_022604 {REF} {Length: 2711} {tRNA: Lys(CTT),pseudo, score=24.8} {Smed: dd_Smed_v6_8694_0_1, dd_Smed_v6_8694_0_1, [Score=47.0, Expect=9e-07]} {RNA1509_54756} {RNA1310_15352} {RNA815_19591} | |
| 2. | MligTC455_16310 | 448 | 9.33 | Mlig455_061644 | Neo: - Age: Down-Up-Up Region-enriched R6: 2.422/0.00000 Regeneration-downregulated R6: -2.058 Regeneration-depleted R6: -2.058 |
RAB6B | 0.962 | - | - | - | - | 0.962 | - | Mlig455_061644 {REF} {Length: 991} {Pfam: Ras family [PF00071.24, score=155.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=91.8]; ADP-ribosylation factor family [PF00025.23, score=46.1]; 50S ribosome-binding GTPase [PF01926.25, score=20.8]; Signal recognition particle receptor beta subunit [PF09439.12, score=20.0]; Gtr1/RagA G protein conserved region [PF04670.14, score=18.7]} {Human: ENSG00000154917, RAB6B, RAB6B, member RAS oncogene family, [Score=139, Expect=2e-40]; ENSG00000175582, RAB6A, RAB6A, member RAS oncogene family, [Score=135, Expect=5e-39]} {Mouse: ENSMUSG00000032549, Rab6b, RAB6B, member RAS oncogene family, [Score=139, Expect=1e-40]; ENSMUSG00000030704, Rab6a, RAB6A, member RAS oncogene family, [Score=135, Expect=3e-39]} {Dmel: FBgn0015797, Rab6, [Score=133, Expect=1e-38]} {Celegans: WBGene00004270, rab-6.2, Ras-related protein Rab-6.2, [Score=131, Expect=5e-38]} {Smed: dd_Smed_v6_7052_0_1, dd_Smed_v6_7052_0_1, [Score=142, Expect=2e-42]} {RNA1509_44039} {RNA1310_43547, RNA1509_44039} {RNA1509_44039, RNA815_24166} |
| 3. | MligTC455_09992 | 33 | 0.69 | Mlig455_065598 | Neo: - Age: Up-Down-Down |
0.96 | - | - | - | - | 0.960 | - | Mlig455_065598 {REF} {Length: 3825} {Pfam: WSC domain [PF01822.21, score=24.5]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=46.6, Expect=4e-06]} {RNA1509_29754} {RNA1310_34378, RNA1509_29754} {RNA1509_29754, RNA815_35918} | |
| 4. | MligTC455_30872 | 156 | 3.25 | Mlig455_038562, Mlig455_052194, Mlig455_053458 | Neo: - |
0.959 | - | - | - | - | 0.959 | - | Mlig455_038562 {REF} {Length: 841} {TRANSSPLICED} {RNA1509_34308, RNA1509_38780} {RNA1310_52601, RNA1509_34308, RNA1509_38780} {RNA1509_34308, RNA1509_38780, RNA815_25392} Mlig455_052194 {REF} {Length: 842} {TRANSSPLICED} {RNA1509_38780} {RNA1310_52601} {RNA815_25392} Mlig455_053458 {REF} {Length: 877} {TRANSSPLICED} {RNA1509_24392} {RNA1310_40806.2} {RNA815_22141.2} |
|
| 5. | MligTC455_36850 | 102 | 2.12 | Mlig455_061130 | Neo: - Age: - |
RHBDF2 | 0.959 | - | - | - | - | - | 0.959 | Mlig455_061130 {REF} {Length: 6350} {TRANSSPLICED} {Pfam: Rhomboid family [PF01694.24, score=74.1]} {Human: ENSG00000129667, RHBDF2, rhomboid 5 homolog 2, [RH, Score=362, Expect=7e-112]; ENSG00000007384, RHBDF1, rhomboid 5 homolog 1, [RH, Score=360, Expect=5e-111]} {Mouse: ENSMUSG00000020806, Rhbdf2, rhomboid 5 homolog 2, [RH, Score=366, Expect=1e-113]} {Dmel: FBgn0041723, rho-5, rhomboid-5, [RH, Score=309, Expect=2e-89]} {Celegans: WBGene00004403, rom-4, Rhomboid-like protein, [RH, Score=313, Expect=2e-91]} {Smed: dd_Smed_v6_11534_0_2, dd_Smed_v6_11534_0_2, [RH, Score=410, Expect=3e-132]} {RNA1509_18207} {RNA1310_7108} {RNA815_9193} |
| 6. | MligTC455_46822 | 605 | 12.61 | Mlig455_034621 | Neo: - |
0.955 | - | - | - | - | - | 0.955 | Mlig455_034621 {REF} {Length: 4106} {TRANSSPLICED} {RNA1509_53831} {RNA1310_22633.1} {RNA815_28333} | |
| 7. | MligTC455_10415 | 49 | 1.03 | Mlig455_020038 | Neo: - Age: Down-Up-Down Region-enriched R4: 4.412/0.00839 |
MAP3K19 | 0.952 | - | - | - | - | - | 0.952 | Mlig455_020038 {REF} {Length: 6555} {Pfam: Protein kinase domain [PF00069.27, score=167.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=118.8]; Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=68.5]; MAC/Perforin domain [PF01823.21, score=50.4]; Nine Cysteines Domain of family 3 GPCR [PF07562.16, score=42.1]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=129, Expect=4e-29]} {Mouse: ENSMUSG00000041245, Wnk3, WNK lysine deficient protein kinase 3, [Score=111, Expect=2e-24]; ENSMUSG00000025758, Plk4, polo like kinase 4, [Score=108, Expect=5e-23]; ENSMUSG00000116326, Plk4, polo like kinase 4, [Score=108, Expect=5e-23]} {Dmel: FBgn0024329, Mekk1, [Score=127, Expect=7e-29]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=108, Expect=2e-23]} {Smed: dd_Smed_v6_4784_0_2, dd_Smed_v6_4784_0_2, [Score=108, Expect=6e-24]} {RNA1509_32401} {RNA1310_39112} {RNA815_35359} |
Berezikov Lab - 2020-2021 © ERIBA