TomoSeq data search

Data search

Results for MligTC455_32973

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_32973

42

0.88

Mlig455_048857

Neo: -

Age: -

KCTD1

Mlig455_048857 {REF} {Length: 2446} {Pfam: Domain of unknown function (DUF3504) [PF12012.10, score=41.7]; Phage integrase family [PF00589.24, score=30.2]} {Human: ENSG00000134504, KCTD1, potassium channel tetramerization domain containing 1, [Score=98.2, Expect=3e-21]} {Mouse: ENSMUSG00000036225, Kctd1, potassium channel tetramerisation domain containing 1, [Score=98.2, Expect=2e-21]} {RNA1509_32880} {RNA1310_39104} {RNA815_16657.2}

Cumulative graph for MligTC455_32973

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.349	1.123	0.99604	1.00000
RegionR2	1.926	1.123	0.22966	0.60190
RegionR3	0.983	1.123	0.37766	0.91071
RegionR4	0.35	1.123	0.66164	0.96090
RegionR5	-2.954	1.123	1.00000	1.00000
RegionR6	0.082	1.123	0.77069	1.00000
RegionR7	2.826	1.123	0.09097	0.57772
RegionR8	-1.864	1.123	0.66150	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.194	1.123	0.91062	1.00000
RegenerationR2	1.629	1.123	0.16004	0.59730
RegenerationR3	2.218	1.123	0.10862	0.51993
RegenerationR4	0.858	1.123	0.51583	0.87792
RegenerationR5	3.313	1.123	0.03276	0.30210
RegenerationR6	2.059	1.123	0.18382	0.51946
RegenerationBL	4.375	1.123	0.00519	0.06737
RegenerationTP	1.487	1.123	0.53537	0.92342

Genes with expression patterns similar to MligTC455_32973

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_32973	42	0.88	Mlig455_048857	Neo: - Age: -	KCTD1	3	-	-	-	1.000	1.000	1.000	Mlig455_048857 {REF} {Length: 2446} {Pfam: Domain of unknown function (DUF3504) [PF12012.10, score=41.7]; Phage integrase family [PF00589.24, score=30.2]} {Human: ENSG00000134504, KCTD1, potassium channel tetramerization domain containing 1, [Score=98.2, Expect=3e-21]} {Mouse: ENSMUSG00000036225, Kctd1, potassium channel tetramerisation domain containing 1, [Score=98.2, Expect=2e-21]} {RNA1509_32880} {RNA1310_39104} {RNA815_16657.2}
2.	MligTC455_01353	12	0.26	Mlig455_011739	Neo: - Age: -		0.975	-	-	-	-	0.975	-	Mlig455_011739 {REF} {Length: 852} {Pfam: Integrase core domain [PF00665.28, score=28.0]} {Smed: dd_Smed_v6_11155_0_2, dd_Smed_v6_11155_0_2, [Score=58.2, Expect=1e-11]} {RNA1509_14877} {RNA1310_28454.1} {RNA815_5959.1}
3.	MligTC455_33607	482	10.03	Mlig455_064683	Neo: Int S/G2/M Age: -	KDM1A	0.968	-	-	-	-	0.968	-	Mlig455_064683 {REF} {Length: 3352} {TRANSSPLICED} {Pfam: Flavin containing amine oxidoreductase [PF01593.26, score=195.6]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=57.8]; FAD dependent oxidoreductase [PF01266.26, score=30.1]; Thi4 family [PF01946.19, score=29.4]; FAD binding domain [PF00890.26, score=28.9]; FAD binding domain [PF01494.21, score=25.0]; FAD dependent oxidoreductase [PF12831.9, score=23.6]; HI0933-like protein [PF03486.16, score=21.0]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=20.5]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=20.1]} {Human: ENSG00000004487, KDM1A, lysine demethylase 1A, [Score=114, Expect=9e-26]} {Mouse: ENSMUSG00000036940, Kdm1a, lysine (K)-specific demethylase 1A, [Score=115, Expect=5e-26]} {Dmel: FBgn0260397, Su(var)3-3, Suppressor of variegation 3-3, [Score=97.8, Expect=1e-20]} {Celegans: WBGene00000137, amx-1, Amine oxidase family member 1, [Score=106, Expect=1e-23]} {Smed: dd_Smed_v6_10899_0_1, dd_Smed_v6_10899_0_1, [RH, Score=415, Expect=1e-136]} {RNA1509_26570} {RNA1310_9348} {RNA815_2019}
4.	MligTC455_37275	698	14.54	Mlig455_053298	Neo: - Age: - Region-enriched R4: 2.180/0.02051	CEP104	0.964	-	-	-	-	0.964	-	Mlig455_053298 {REF} {Length: 4862} {TRANSSPLICED} {Pfam: UvrB/uvrC motif [PF02151.21, score=29.2]} {Human: ENSG00000116198, CEP104, centrosomal protein 104, [Score=559, Expect=0.0]} {Mouse: ENSMUSG00000039523, Cep104, centrosomal protein 104, [RH, Score=549, Expect=0.0]} {Dmel: FBgn0032800, CG10137, [Score=181, Expect=7e-47]} {Celegans: WBGene00011523, T06D8.2, [RH, Score=84.3, Expect=1e-16]} {Smed: dd_Smed_v6_10228_0_1, dd_Smed_v6_10228_0_1, [Score=595, Expect=0.0]} {RNA1509_3191, RNA1509_8359} {RNA1310_3596.2, RNA1509_8359} {RNA1509_8359, RNA815_945}
5.	MligTC455_39921	16	0.34	Mlig455_011423	Neo: - Age: -		0.963	-	-	-	-	0.963	-	Mlig455_011423 {REF} {Length: 868} {NoTransDecoderORF} {RNA1509_46569} {RNA1310_25987} {RNA815_7475.2}
6.	MligTC455_21849	76	1.59	Mlig455_006051	Neo: - Age: -		0.959	-	-	-	-	0.959	-	Mlig455_006051 {REF} {Length: 3885} {RNA1509_60168} {RNA1310_96606, RNA1509_60168} {RNA1509_60168, RNA815_23281}
7.	MligTC455_40453	19	0.39	Mlig455_019141	Neo: - Age: -		0.954	-	-	-	0.954	-	-	Mlig455_019141 {REF} {Length: 1318} {NoTransDecoderORF} {RNA1509_40555} {RNA1310_59199} {RNA815_59300}
8.	MligTC455_37698	9576	199.51	Mlig455_012338	Neo: - Age: - Regeneration-upregulated BL: 2.741 Regeneration-enriched BL: 2.741	HMCN2	0.953	-	-	-	-	0.953	-	Mlig455_012338 {REF} {Length: 7183} {Pfam: von Willebrand factor type A domain [PF13519.8, score=235.7]; von Willebrand factor type A domain [PF13768.8, score=127.1]; Protein of unknown function (DUF1638) [PF07796.13, score=56.4]; VWA domain containing CoxE-like protein [PF05762.16, score=54.0]; NTPase [PF03266.17, score=32.1]; Colicin Ia [PF11504.10, score=29.0]; Tetrahydromethanopterin S-methyltransferase, subunit A [PF04208.16, score=27.9]; Family of unknown function (DUF5347) [PF17282.4, score=25.0]} {Human: ENSG00000148357, HMCN2, hemicentin 2, [Score=73.6, Expect=3e-12]; ENSG00000143341, HMCN1, hemicentin 1, [Score=72.0, Expect=1e-11]} {Mouse: ENSMUSG00000055632, Hmcn2, hemicentin 2, [Score=73.2, Expect=3e-12]; ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=72.4, Expect=7e-12]} {Celegans: WBGene00001863, him-4, Hemicentin; High Incidence of Males (Increased X chromosome loss), [Score=93.2, Expect=1e-18]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=92.4, Expect=2e-18]} {RNA1509_415} {RNA1310_3126.1} {RNA815_1151.1}
9.	MligTC455_37699	9492	197.74	Mlig455_034962	Neo: - Age: - Regeneration-upregulated BL: 2.634 Regeneration-enriched BL: 2.634	HMCN2	0.953	-	-	-	-	0.953	-	Mlig455_034962 {REF} {Length: 5538} {Pfam: von Willebrand factor type A domain [PF13519.8, score=200.3]; von Willebrand factor type A domain [PF13768.8, score=108.6]; Protein of unknown function (DUF1638) [PF07796.13, score=47.0]; VWA domain containing CoxE-like protein [PF05762.16, score=46.2]; NTPase [PF03266.17, score=26.8]; Colicin Ia [PF11504.10, score=25.5]; Family of unknown function (DUF5347) [PF17282.4, score=20.6]} {Human: ENSG00000148357, HMCN2, hemicentin 2, [Score=73.2, Expect=4e-12]; ENSG00000143341, HMCN1, hemicentin 1, [Score=71.6, Expect=1e-11]} {Mouse: ENSMUSG00000055632, Hmcn2, hemicentin 2, [Score=73.6, Expect=2e-12]; ENSMUSG00000066842, Hmcn1, hemicentin 1, [Score=72.0, Expect=7e-12]} {Celegans: WBGene00001863, him-4, Hemicentin; High Incidence of Males (Increased X chromosome loss), [Score=93.2, Expect=1e-18]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=92.8, Expect=1e-18]} {RNA1509_415, RNA1509_59657} {RNA1310_3126.1, RNA1509_59657} {RNA1509_59657, RNA815_1151.1}
10.	MligTC455_41773	342	7.12	Mlig455_033729	Neo: - Age: logFC(26M/2M)=-0.405 Region-enriched R4: 2.782/0.01934 Regeneration-upregulated BL: 2.334 Regeneration-enriched BL: 2.334	RAB10	0.952	-	-	-	-	0.952	-	Mlig455_033729 {REF} {Length: 1706} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=216.2]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=120.4]; ADP-ribosylation factor family [PF00025.23, score=63.2]; Elongation factor Tu GTP binding domain [PF00009.29, score=29.4]; Gtr1/RagA G protein conserved region [PF04670.14, score=27.8]; RsgA GTPase [PF03193.18, score=23.0]; 50S ribosome-binding GTPase [PF01926.25, score=18.9]} {Human: ENSG00000084733, RAB10, RAB10, member RAS oncogene family, [Score=259, Expect=2e-88]} {Mouse: ENSMUSG00000020671, Rab10, RAB10, member RAS oncogene family, [Score=259, Expect=1e-88]} {Dmel: FBgn0015789, Rab10, [Score=246, Expect=2e-83]} {Celegans: WBGene00004273, rab-10, Ras-related protein Rab-10, [Score=244, Expect=1e-82]} {Smed: dd_Smed_v6_3485_0_1, dd_Smed_v6_3485_0_1, [Score=224, Expect=1e-74]} {RNA1509_59464} {RNA1310_45042} {RNA815_22097}

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