M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33296

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33296 570 11.88 Mlig455_034979, Mlig455_053705

Neo: -

Age: -

Mlig455_034979 {REF} {Length: 2544} {RNA1509_22376} {RNA1310_23542, RNA1509_22376} {RNA1509_22376, RNA815_7831}

Mlig455_053705 {REF} {Length: 3107} {RNA1509_22376} {RNA1310_23542} {RNA815_7831}

Cumulative graph for MligTC455_33296

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.732 3.916 0.36155 1.00000
RegionR2 1.707 3.916 0.06903 0.31962
RegionR3 0.172 3.916 0.83194 1.00000
RegionR4 -0.995 3.916 0.29197 0.60305
RegionR5 0.975 3.916 0.16843 0.43598
RegionR6 -0.519 3.916 0.51315 1.00000
RegionR7 0.552 3.916 0.52865 1.00000
RegionR8 -0.161 3.916 0.89382 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.552 3.916 0.55363 1.00000
RegenerationR2 -1.348 3.916 0.16128 0.59863
RegenerationR3 0.089 3.916 0.92865 1.00000
RegenerationR4 0.852 3.916 0.37581 0.79852
RegenerationR5 -0.295 3.916 0.75121 0.97221
RegenerationR6 1.842 3.916 0.06278 0.31468
RegenerationBL 3.062 3.916 0.00035 0.01106
RegenerationTP 0.448 3.916 0.67223 1.00000


Genes with expression patterns similar to MligTC455_33296

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33296 570 11.88 Mlig455_034979, Mlig455_053705

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_034979 {REF} {Length: 2544} {RNA1509_22376} {RNA1310_23542, RNA1509_22376} {RNA1509_22376, RNA815_7831}

Mlig455_053705 {REF} {Length: 3107} {RNA1509_22376} {RNA1310_23542} {RNA815_7831}
2. MligTC455_47270 139 2.9 Mlig455_057576

Neo: Irradiation

Age: Down-Up-Up

 2.543 0.810 0.764 - - - 0.969 Mlig455_057576 {REF} {Length: 2184} {RNA1310_33879} {RNA815_33583}
3. MligTC455_19062 527 10.99 Mlig455_014930, Mlig455_045197

Neo: Irradiation

Age: logFC(26M/2M)=0.340

 2.415 0.729 - 0.722 - - 0.964

Mlig455_014930 {REF} {Length: 1433} {TRANSSPLICED} {Pfam: RAD51 interacting motif [PF15696.7, score=22.2]} {RNA1310_21356} {RNA815_22374}

Mlig455_045197 {REF} {Length: 1504} {Pfam: RAD51 interacting motif [PF15696.7, score=22.5]} {RNA1310_21356} {RNA815_22374}
4. MligTC455_35010 516 10.75 Mlig455_054169

Neo: -

Age: logFC(26M/2M)=-0.545

Region-enriched R5: 1.964/0.00569

 CALML5 1.797 - - - 0.834 - 0.963 Mlig455_054169 {REF} {Length: 914} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=51.8]; EF-hand domain pair [PF13499.8, score=50.0]; EF-hand domain [PF13405.8, score=42.7]; EF-hand domain pair [PF13833.8, score=41.2]; EF hand [PF13202.8, score=39.4]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=27.0]} {Human: ENSG00000178372, CALML5, calmodulin like 5, [Score=56.2, Expect=3e-10]} {Mouse: ENSMUSG00000005649, Cabp5, calcium binding protein 5, [Score=55.1, Expect=8e-10]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=48.5, Expect=1e-07]} {Celegans: WBGene00006861, cal-5, CALmodulin related genes, [Score=62.0, Expect=8e-13]} {Smed: dd_Smed_v6_11942_0_1, dd_Smed_v6_11942_0_1, [Score=50.4, Expect=2e-08]} {RNA1509_32665} {RNA1310_29494.2} {RNA815_16454.1}
5. MligTC455_46622 41 0.86 Mlig455_019865

Neo: -

Age: Down-Up-Up

Region-enriched R4: 3.981/0.04149

 0.976 - - - 0.976 - - Mlig455_019865 {REF} {Length: 2038} {RNA1310_27198} {RNA815_14877}
6. MligTC455_23994 93 1.95 Mlig455_048700

Neo: -

Age: -

 KDM6A 0.972 - - - - - 0.972 Mlig455_048700 {REF} {Length: 4708} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=104.2]; WD domain, G-beta repeat [PF00400.34, score=45.8]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=19.3]} {Human: ENSG00000147050, KDM6A, lysine demethylase 6A, [RH, Score=586, Expect=0.0]; ENSG00000183878, UTY, ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, [RH, Score=577, Expect=0.0]; ENSG00000132510, KDM6B, lysine demethylase 6B, [RH, Score=560, Expect=4e-175]} {Mouse: ENSMUSG00000037369, Kdm6a, lysine (K)-specific demethylase 6A, [RH, Score=589, Expect=0.0]; ENSMUSG00000018476, Kdm6b, KDM1 lysine (K)-specific demethylase 6B, [RH, Score=560, Expect=9e-176]} {Dmel: FBgn0260749, Utx, Utx histone demethylase, [Score=590, Expect=0.0]} {Celegans: WBGene00017046, utx-1, UTX (Ubiquitously transcribed TPR on X) homolog, [RH, Score=422, Expect=9e-129]} {Smed: dd_Smed_v6_5837_0_1, dd_Smed_v6_5837_0_1, [RH, Score=565, Expect=0.0]} {RNA1509_48790} {RNA1310_10269.1} {RNA815_1846}
7. MligTC455_10547 28 0.59 Mlig455_033470

Neo: -

Age: -

 PBX4 0.969 - - - 0.969 - - Mlig455_033470 {REF} {Length: 2410} {Pfam: Homeodomain [PF00046.31, score=45.7]; Homeobox KN domain [PF05920.13, score=45.3]} {Human: ENSG00000105717, PBX4, PBX homeobox 4, [Score=53.5, Expect=4e-07]; ENSG00000237344, PBX2, PBX homeobox 2, [Score=51.6, Expect=2e-06]; ENSG00000206315, PBX2, PBX homeobox 2, [Score=51.6, Expect=2e-06]; ENSG00000224952, PBX2, PBX homeobox 2, [Score=51.6, Expect=2e-06]; ENSG00000204304, PBX2, PBX homeobox 2, [Score=51.6, Expect=2e-06]; ENSG00000232005, PBX2, PBX homeobox 2, [Score=51.6, Expect=2e-06]; ENSG00000236353, PBX2, PBX homeobox 2, [Score=51.6, Expect=2e-06]; ENSG00000225987, PBX2, PBX homeobox 2, [Score=51.6, Expect=2e-06]; ENSG00000185630, PBX1, PBX homeobox 1, [Score=51.2, Expect=2e-06]} {Mouse: ENSMUSG00000034673, Pbx2, pre B cell leukemia homeobox 2, [Score=51.6, Expect=1e-06]; ENSMUSG00000052534, Pbx1, pre B cell leukemia homeobox 1, [Score=51.2, Expect=1e-06]; ENSMUSG00000100133, Tgif2lx1, TGFB-induced factor homeobox 2-like, X-linked 1, [Score=49.7, Expect=2e-06]; ENSMUSG00000100194, Tgif2lx2, TGFB-induced factor homeobox 2-like, X-linked 2, [Score=49.7, Expect=2e-06]} {Dmel: FBgn0031232, CG11617, [Score=53.1, Expect=2e-07]} {Celegans: WBGene00000461, ceh-40, Homeobox protein ceh-40, [Score=53.5, Expect=1e-07]} {Smed: dd_Smed_v6_7324_0_1, dd_Smed_v6_7324_0_1, [RH, Score=89.0, Expect=4e-19]} {RNA1509_55011} {RNA1310_39435} {RNA815_20886}
8. MligTC455_44086 58 1.2 Mlig455_011540, Mlig455_013662, Mlig455_037887, Mlig455_046315

Neo: -

Age: -

Region-enriched R4: 6.446/0.02632

 FLCN 0.966 - - - 0.966 - -

Mlig455_011540 {REF} {Length: 10822} {TRANSSPLICED} {Pfam: Vesicle coat protein involved in Golgi to plasma membrane transport [PF11704.10, score=128.0]; Forkhead domain [PF00250.20, score=110.7]; Folliculin C-terminal domain [PF16692.7, score=107.5]} {Human: ENSG00000154803, FLCN, folliculin, [Score=210, Expect=2e-57]} {Mouse: ENSMUSG00000032633, Flcn, folliculin, [Score=209, Expect=3e-57]} {Dmel: FBgn0029504, CHES-1-like, Checkpoint suppressor 1-like, [RH, Score=138, Expect=1e-32]} {Celegans: WBGene00017699, flcn-1, F22D3.2 protein; FoLliCuliN, [RH, Score=98.2, Expect=1e-20]} {Smed: dd_Smed_v6_4329_0_2, dd_Smed_v6_4329_0_2, [Score=149, Expect=1e-37]} {RNA1509_32094} {RNA1310_3296} {RNA815_1916}

Mlig455_013662 {REF} {Length: 211} {NoTransDecoderORF} {RNA1310_36032}

Mlig455_037887 {REF} {Length: 202} {NoTransDecoderORF} {RNA1310_36032}

Mlig455_046315 {REF} {Length: 1134} {RNA1509_32094} {RNA1310_36032} {RNA815_33972}
9. MligTC455_24416 437 9.1 Mlig455_036519

Neo: -

Age: Down-Up-Down

Region-enriched R8: 2.853/0.02042

 0.961 - - - 0.961 - - Mlig455_036519 {REF} {Length: 1764} {RNA1310_33116} {RNA815_41020}
10. MligTC455_26246 17 0.35 Mlig455_013416, Mlig455_047122, Mlig455_047123, Mlig455_055769

Neo: -

Age: Up-Down-Down

 0.96 - - - - 0.960 -

Mlig455_013416 {REF} {Length: 4350} {Pfam: Integrase core domain [PF00665.28, score=42.4]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=52.0, Expect=2e-07]} {RNA1509_31888} {RNA1310_1190} {RNA815_22519}

Mlig455_047122 {REF} {Length: 383} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=26.5]; Aspartyl protease [PF13650.8, score=25.6]; Zinc knuckle [PF00098.25, score=21.5]} {RNA1509_31888} {RNA1310_12942} {RNA815_47299}

Mlig455_047123 {REF} {Length: 367} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=116.3]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=85.7]} {Smed: dd_Smed_v6_26921_0_1, dd_Smed_v6_26921_0_1, [Score=98.2, Expect=4e-27]} {RNA1509_42532} {RNA1310_1190} {RNA815_22519}

Mlig455_055769 {REF} {Length: 1510} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=26.5]; Aspartyl protease [PF13650.8, score=25.6]; Zinc knuckle [PF00098.25, score=21.5]} {RNA1509_31888} {RNA1310_12942} {RNA815_11366.1}
11. MligTC455_27619 143 2.98 Mlig455_056970

Neo: -

Age: -

 ZMYND11 0.958 - - - 0.958 - - Mlig455_056970 {REF} {Length: 2861} {TRANSSPLICED} {Pfam: PWWP domain [PF00855.19, score=34.9]} {Human: ENSG00000015171, ZMYND11, zinc finger MYND-type containing 11, [RH, Score=259, Expect=8e-76]} {Mouse: ENSMUSG00000021156, Zmynd11, zinc finger, MYND domain containing 11, [RH, Score=258, Expect=1e-76]} {Dmel: FBgn0039863, CG1815, [Score=119, Expect=7e-27]} {Celegans: WBGene00000262, bra-1, BMP Receptor Associated protein family, [RH, Score=90.9, Expect=1e-20]} {Smed: dd_Smed_v6_9896_0_1, dd_Smed_v6_9896_0_1, [RH, Score=358, Expect=1e-109]} {RNA1509_8467} {RNA1310_5971.1, RNA1509_8467} {RNA1509_8467, RNA815_4233}
12. MligTC455_12872 149 3.1 Mlig455_057561

Neo: Irradiation

Age: Down-Up-Down

Region-enriched R5: 1.624/0.04283

 0.957 - - - - - 0.957 Mlig455_057561 {REF} {Length: 1130} {RNA1509_29400} {RNA1310_15529} {RNA815_14251}
13. MligTC455_51459 181 3.76 Mlig455_010077, Mlig455_063246

Neo: -

Age: Down-Up-Up

 0.956 - - - - - 0.956

Mlig455_010077 {REF} {Length: 657} {Pfam: Tyrosine hydroxylase N terminal [PF12549.10, score=42.7]} {RNA1310_62596} {RNA815_36555}

Mlig455_063246 {REF} {Length: 828} {Pfam: Tyrosine hydroxylase N terminal [PF12549.10, score=52.3]; P-loop ATPase protein family [PF03668.17, score=21.6]} {RNA1310_62596} {RNA815_36555}
14. MligTC455_15471 310 6.45 Mlig455_022527

Neo: Irradiation

Age: logFC(26M/2M)=0.502

Region-enriched R5: 3.024/0.00001

 CHEK1 0.955 - - - - - 0.955 Mlig455_022527 {REF} {Length: 2924} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=161.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=72.6]; Kinase-like [PF14531.8, score=18.3]} {Human: ENSG00000149554, CHEK1, checkpoint kinase 1, [RH, Score=219, Expect=3e-64]} {Mouse: ENSMUSG00000032113, Chek1, checkpoint kinase 1, [RH, Score=207, Expect=4e-60]} {Dmel: FBgn0261278, grp, grapes, [RH, Score=213, Expect=7e-62]} {Celegans: WBGene00000498, chk-1, Serine/threonine-protein kinase chk-1, [RH, Score=208, Expect=3e-60]} {Smed: dd_Smed_v6_12789_0_1, dd_Smed_v6_12789_0_1, [Score=124, Expect=3e-30]} {RNA1509_12170, RNA1509_35656, RNA1509_43198} {RNA1310_7988, RNA1509_12170, RNA1509_35656, RNA1509_43198} {RNA1509_12170, RNA1509_35656, RNA1509_43198, RNA815_13053}
15. MligTC455_13489 99 2.06 Mlig455_052411

Neo: Irradiation

Age: -

Region-enriched R5: 2.712/0.02804

 0.954 - - - - - 0.954 Mlig455_052411 {REF} {Length: 1290} {TRANSSPLICED} {Pfam: Tudor domain [PF00567.26, score=30.9]} {RNA1509_40924} {RNA1310_26717} {RNA815_11954.1}
16. MligTC455_50087 262 5.45 Mlig455_065489

Neo: -

Age: -

 0.954 - - - 0.954 - - Mlig455_065489 {REF} {Length: 1873} {RNA1509_41004} {RNA1310_17677, RNA1509_41004} {RNA1509_41004, RNA815_17177}
17. MligTC455_32090 119 2.48 Mlig455_055062, Mlig455_064059

Neo: -

Age: -

 0.953 - - - 0.953 - -

Mlig455_055062 {REF} {Length: 831} {NoTransDecoderORF} {RNA1509_49715} {RNA1310_24655} {RNA815_31399}

Mlig455_064059 {REF} {Length: 762} {NoTransDecoderORF} {RNA1509_49715} {RNA1310_24655} {RNA815_31399}
18. MligTC455_13735 77 1.59 Mlig455_001782

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_001782 {REF} {Length: 598} {NoTransDecoderORF}
19. MligTC455_51395 121 2.52 Mlig455_005756

Neo: -

Age: -

 IGFALS 0.951 - - - 0.951 - - Mlig455_005756 {REF} {Length: 3785} {Pfam: Leucine rich repeat [PF13855.8, score=285.4]; Leucine Rich repeats (2 copies) [PF12799.9, score=116.4]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=90.8]; Leucine-rich repeat [PF14580.8, score=72.0]; Leucine Rich Repeat [PF00560.35, score=37.6]} {Human: ENSG00000099769, IGFALS, insulin like growth factor binding protein acid labile subunit, [RH, Score=160, Expect=8e-41]} {Mouse: ENSMUSG00000046070, Igfals, insulin-like growth factor binding protein, acid labile subunit, [RH, Score=152, Expect=3e-38]} {Dmel: FBgn0259677, CG42346, [RH, Score=140, Expect=1e-33]} {Celegans: WBGene00016974, lron-15, ELRR (Extracellular Leucine-Rich Repeat) ONly, [Score=129, Expect=3e-30]} {Smed: dd_Smed_v6_3513_0_1, dd_Smed_v6_3513_0_1, [RH, Score=80.1, Expect=1e-15]} {RNA1509_59023} {RNA1310_6354} {RNA815_7087}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA