M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33563

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33563 304 6.34 Mlig455_003859, Mlig455_003860, Mlig455_006554, Mlig455_006555, Mlig455_016950, Mlig455_018481, Mlig455_018483, Mlig455_031341, Mlig455_031342, Mlig455_057217, Mlig455_065069, Mlig455_070194

Neo: -

Age: Down-Up-Down

Mlig455_003859 {REF} {Length: 1409} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_003860 {REF} {Length: 1410} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667, RNA1509_18509} {RNA1509_18509, RNA815_14362}

Mlig455_006554 {REF} {Length: 1403} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_006555 {REF} {Length: 1408} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_016950 {REF} {Length: 1742} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=103.7]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=80.0]; Integrase zinc binding domain [PF17921.3, score=51.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=33.5]} {Mouse: ENSMUSG00000061186, Sfmbt2, Scm-like with four mbt domains 2, [Score=68.9, Expect=1e-11]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=99.0, Expect=2e-22]} {RNA1509_38544} {RNA1310_2645.1} {RNA815_16906}

Mlig455_018481 {REF} {Length: 6807} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=102.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=77.2]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=55.8, Expect=1e-07]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=94.4, Expect=8e-21]} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_018483 {REF} {Length: 1402} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_031341 {REF} {Length: 1404} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_031342 {REF} {Length: 1404} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_057217 {REF} {Length: 1399} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_065069 {REF} {Length: 1404} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_070194 {REF} {Length: 1194} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Cumulative graph for MligTC455_33563

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.037 3.172 0.97956 1.00000
RegionR2 1.977 3.172 0.03462 0.21324
RegionR3 0.871 3.172 0.23463 0.77643
RegionR4 0.109 3.172 0.88998 1.00000
RegionR5 -0.792 3.172 0.30323 0.63929
RegionR6 -0.714 3.172 0.38415 0.96220
RegionR7 -0.198 3.172 0.83615 1.00000
RegionR8 -1.291 3.172 0.32986 0.96281

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.56 3.172 0.31314 1.00000
RegenerationR2 -0.273 3.172 0.73915 0.96949
RegenerationR3 0.16 3.172 0.86546 1.00000
RegenerationR4 0.709 3.172 0.42718 0.82929
RegenerationR5 0.948 3.172 0.29938 0.72635
RegenerationR6 0.502 3.172 0.61841 0.87978
RegenerationBL 0.06 3.172 0.96046 1.00000
RegenerationTP 1.427 3.172 0.20466 0.64654


Genes with expression patterns similar to MligTC455_33563

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33563 304 6.34 Mlig455_003859, Mlig455_003860, Mlig455_006554, Mlig455_006555, Mlig455_016950, Mlig455_018481, Mlig455_018483, Mlig455_031341, Mlig455_031342, Mlig455_057217, Mlig455_065069, Mlig455_070194

Neo: -

Age: Down-Up-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_003859 {REF} {Length: 1409} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_003860 {REF} {Length: 1410} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667, RNA1509_18509} {RNA1509_18509, RNA815_14362}

Mlig455_006554 {REF} {Length: 1403} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_006555 {REF} {Length: 1408} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_016950 {REF} {Length: 1742} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=103.7]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=80.0]; Integrase zinc binding domain [PF17921.3, score=51.0]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=33.5]} {Mouse: ENSMUSG00000061186, Sfmbt2, Scm-like with four mbt domains 2, [Score=68.9, Expect=1e-11]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=99.0, Expect=2e-22]} {RNA1509_38544} {RNA1310_2645.1} {RNA815_16906}

Mlig455_018481 {REF} {Length: 6807} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=102.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=77.2]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=55.8, Expect=1e-07]} {Smed: dd_Smed_v6_15498_0_18, dd_Smed_v6_15498_0_18, [Score=94.4, Expect=8e-21]} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_018483 {REF} {Length: 1402} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_031341 {REF} {Length: 1404} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_031342 {REF} {Length: 1404} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_057217 {REF} {Length: 1399} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_065069 {REF} {Length: 1404} {TRANSSPLICED} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}

Mlig455_070194 {REF} {Length: 1194} {RNA1509_18509} {RNA1310_27667} {RNA815_14362}
2. MligTC455_39664 122 2.55 Mlig455_023719, Mlig455_023723

Neo: -

Age: -

 EPHA2, EPHA7 0.977 - - 0.977 - - -

Mlig455_023719 {REF} {Length: 1150} {TRANSSPLICED} {Pfam: Ephrin receptor ligand binding domain [PF01404.21, score=109.7]; Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=25.3]; Giardia variant-specific surface protein [PF03302.15, score=17.7]} {Human: ENSG00000142627, EPHA2, EPH receptor A2, [Score=164, Expect=4e-44]} {Mouse: ENSMUSG00000006445, Epha2, Eph receptor A2, [Score=159, Expect=3e-42]} {Celegans: WBGene00006868, vab-1, Ephrin receptor 1, [Score=86.7, Expect=4e-18]} {Smed: dd_Smed_v6_16928_0_1, dd_Smed_v6_16928_0_1, [Score=155, Expect=2e-41]} {RNA1509_51951} {RNA1310_2298.1} {RNA815_18224.1}

Mlig455_023723 {REF} {Length: 5114} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=285.8]; Protein kinase domain [PF00069.27, score=130.1]; Ephrin receptor ligand binding domain [PF01404.21, score=107.2]; Fibronectin type III domain [PF00041.23, score=95.6]; Ephrin type-A receptor 2 transmembrane domain [PF14575.8, score=57.6]; SAM domain (Sterile alpha motif) [PF07647.19, score=55.1]; SAM domain (Sterile alpha motif) [PF00536.32, score=50.6]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=25.8]; ABC1 atypical kinase-like domain [PF03109.18, score=20.9]; Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=19.2]} {Human: ENSG00000135333, EPHA7, EPH receptor A7, [Score=658, Expect=0.0]; ENSG00000145242, EPHA5, EPH receptor A5, [Score=647, Expect=0.0]; ENSG00000116106, EPHA4, EPH receptor A4, [Score=646, Expect=0.0]} {Mouse: ENSMUSG00000028289, Epha7, Eph receptor A7, [Score=659, Expect=0.0]; ENSMUSG00000026235, Epha4, Eph receptor A4, [Score=651, Expect=0.0]; ENSMUSG00000029245, Epha5, Eph receptor A5, [Score=648, Expect=0.0]} {Dmel: FBgn0025936, Eph, Eph receptor tyrosine kinase, [Score=609, Expect=0.0]} {Celegans: WBGene00006868, vab-1, Ephrin receptor 1, [Score=458, Expect=2e-143]} {Smed: dd_Smed_v6_16928_0_1, dd_Smed_v6_16928_0_1, [Score=552, Expect=7e-180]} {RNA1509_24016} {RNA1310_2298.1} {RNA815_10575}
3. MligTC455_39665 112 2.33 Mlig455_023730

Neo: -

Age: -

 EPHA7 0.973 - - 0.973 - - - Mlig455_023730 {REF} {Length: 3591} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=285.8]; Protein kinase domain [PF00069.27, score=130.1]; Ephrin receptor ligand binding domain [PF01404.21, score=107.2]; Fibronectin type III domain [PF00041.23, score=95.6]; Ephrin type-A receptor 2 transmembrane domain [PF14575.8, score=57.6]; SAM domain (Sterile alpha motif) [PF07647.19, score=55.1]; SAM domain (Sterile alpha motif) [PF00536.32, score=50.6]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=25.8]; ABC1 atypical kinase-like domain [PF03109.18, score=20.9]; Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=19.2]} {Human: ENSG00000135333, EPHA7, EPH receptor A7, [Score=658, Expect=0.0]; ENSG00000145242, EPHA5, EPH receptor A5, [Score=647, Expect=0.0]; ENSG00000116106, EPHA4, EPH receptor A4, [Score=646, Expect=0.0]} {Mouse: ENSMUSG00000028289, Epha7, Eph receptor A7, [Score=659, Expect=0.0]; ENSMUSG00000026235, Epha4, Eph receptor A4, [Score=651, Expect=0.0]; ENSMUSG00000029245, Epha5, Eph receptor A5, [Score=648, Expect=0.0]} {Dmel: FBgn0025936, Eph, Eph receptor tyrosine kinase, [Score=609, Expect=0.0]} {Celegans: WBGene00006868, vab-1, Ephrin receptor 1, [Score=458, Expect=2e-143]} {Smed: dd_Smed_v6_16928_0_1, dd_Smed_v6_16928_0_1, [Score=552, Expect=7e-180]} {RNA1509_24016} {RNA1310_2298.1} {RNA815_19987}
4. MligTC455_51319 50 1.04 Mlig455_050267

Neo: -

Age: -

Region-enriched R4: 4.268/0.03200

 RAD51C 0.973 - - 0.973 - - - Mlig455_050267 {REF} {Length: 1379} {TRANSSPLICED} {Pfam: Rad51 [PF08423.13, score=138.4]; AAA domain [PF13481.8, score=35.5]; KaiC [PF06745.15, score=18.8]} {Human: ENSG00000108384, RAD51C, RAD51 paralog C, [RH, Score=179, Expect=3e-52]} {Mouse: ENSMUSG00000007646, Rad51c, RAD51 paralog C, [RH, Score=179, Expect=1e-52]} {Dmel: FBgn0003482, spn-D, spindle D, [RH, Score=110, Expect=1e-27]} {Celegans: WBGene00004297, rad-51, RAD51 short isoform; RecA/Rad51/Dmc1-like protein, [Score=70.5, Expect=3e-13]} {Smed: dd_Smed_v6_16724_0_2, dd_Smed_v6_16724_0_2, [RH, Score=183, Expect=3e-55]} {RNA1509_27617} {RNA1310_25633.1, RNA1509_27617} {RNA1509_27617, RNA815_20829}
5. MligTC455_28211 825 17.18 Mlig455_002889, Mlig455_028241, Mlig455_031494, Mlig455_033212, Mlig455_038883, Mlig455_040356, Mlig455_055622, Mlig455_065854

Neo: -

Age: Down-Up-Down

 GLRA3, PRR9 0.97 - - 0.970 - - -

Mlig455_002889 {REF} {Length: 4249} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=43.5, Expect=4e-06]} {RNA1509_2932} {RNA1310_4439.1} {RNA815_12729}

Mlig455_028241 {REF} {Length: 1712} {RNA1509_44500} {RNA1310_4439.1} {RNA815_1450.1}

Mlig455_031494 {REF} {Length: 2665} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=150.6]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=42.5]} {Human: ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=215, Expect=1e-65]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=212, Expect=1e-64]; ENSG00000188828, GLRA4, glycine receptor alpha 4, [Score=212, Expect=7e-65]; ENSG00000101958, GLRA2, glycine receptor alpha 2, [Score=211, Expect=2e-64]} {Mouse: ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=214, Expect=2e-65]; ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=213, Expect=9e-65]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=212, Expect=1e-64]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=211, Expect=2e-64]} {Dmel: FBgn0024963, GluClalpha, [Score=202, Expect=4e-62]} {Celegans: WBGene00001591, glc-1, Glutamate-gated chloride channel alpha, [Score=199, Expect=7e-60]} {Smed: dd_Smed_v6_25116_0_1, dd_Smed_v6_25116_0_1, [Score=177, Expect=3e-51]} {RNA1509_44500} {RNA1310_35936} {RNA815_12729}

Mlig455_033212 {REF} {Length: 1872} {NoTransDecoderORF} {RNA1509_2932} {RNA1310_4439.1} {RNA815_12729}

Mlig455_038883 {REF} {Length: 10011} {NoTransDecoderORF} {RNA1509_30620} {RNA1310_4439.1} {RNA815_1450.1}

Mlig455_040356 {REF} {Length: 2063} {RNA1509_30620} {RNA1310_13656} {RNA815_1450.1}

Mlig455_055622 {REF} {Length: 2924} {RNA1509_2932} {RNA1310_4439.1} {RNA815_12729}

Mlig455_065854 {REF} {Length: 1772} {NoTransDecoderORF} {RNA1509_44500} {RNA1310_4439.1} {RNA815_1450.1}
6. MligTC455_14176 30 0.63 Mlig455_058283

Neo: -

Age: -

 0.966 - - 0.966 - - - Mlig455_058283 {REF} {Length: 1230} {NoTransDecoderORF} {RNA1509_16231} {RNA1310_87164} {RNA815_8904.1}
7. MligTC455_31307 60 1.25 Mlig455_050632

Neo: -

Age: Down-Down-Down

 0.963 - - 0.963 - - - Mlig455_050632 {REF} {Length: 2484} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}
8. MligTC455_41399 147 3.07 Mlig455_028472, Mlig455_028497

Neo: -

Age: -

Region-enriched R4: 3.401/0.01137

 FADS2 0.963 - - 0.963 - - -

Mlig455_028472 {REF} {Length: 2155} {Pfam: Fatty acid desaturase [PF00487.26, score=111.7]} {Human: ENSG00000134824, FADS2, fatty acid desaturase 2, [Score=348, Expect=8e-118]; ENSG00000149485, FADS1, fatty acid desaturase 1, [Score=339, Expect=4e-115]} {Mouse: ENSMUSG00000024665, Fads2, fatty acid desaturase 2, [Score=357, Expect=4e-121]} {Celegans: WBGene00001395, fat-3, Delta(6)-fatty-acid desaturase fat-3, [Score=107, Expect=1e-26]} {Smed: dd_Smed_v6_10869_0_1, dd_Smed_v6_10869_0_1, [Score=418, Expect=1e-145]} {RNA1509_26943} {RNA1310_8517.1} {RNA815_15928}

Mlig455_028497 {REF} {Length: 2199} {TRANSSPLICED} {Pfam: Fatty acid desaturase [PF00487.26, score=113.5]; Cytochrome b5-like Heme/Steroid binding domain [PF00173.30, score=60.8]} {Human: ENSG00000134824, FADS2, fatty acid desaturase 2, [Score=409, Expect=5e-140]; ENSG00000149485, FADS1, fatty acid desaturase 1, [Score=402, Expect=3e-136]} {Mouse: ENSMUSG00000024665, Fads2, fatty acid desaturase 2, [Score=422, Expect=4e-145]} {Dmel: FBgn0264294, Cyt-b5, Cytochrome b5, [Score=47.0, Expect=3e-06]} {Celegans: WBGene00001395, fat-3, Delta(6)-fatty-acid desaturase fat-3, [Score=121, Expect=4e-30]} {Smed: dd_Smed_v6_10869_0_1, dd_Smed_v6_10869_0_1, [RH, Score=476, Expect=3e-167]} {RNA1509_26943} {RNA1310_8517.1} {RNA815_15928}
9. MligTC455_28440 96 2 Mlig455_042908

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_042908 {REF} {Length: 5108} {TRANSSPLICED} {RNA1509_6737} {RNA1310_143.1} {RNA815_12188}
10. MligTC455_31627 46 0.96 Mlig455_004453, Mlig455_037315

Neo: -

Age: -

Region-enriched R2: 5.711/0.01167

 0.953 - - 0.953 - - -

Mlig455_004453 {REF} {Length: 3830} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=23.9]} {RNA1509_36985} {RNA1310_21834.1} {RNA815_12605}

Mlig455_037315 {REF} {Length: 2375} {Pfam: KIX domain [PF02172.18, score=19.7]} {RNA1509_42342} {RNA1310_4557} {RNA815_16034.1}
11. MligTC455_33995 174 3.63 Mlig455_042151

Neo: -

Age: logFC(26M/2M)=-0.705

 ANK1 0.95 - - 0.950 - - - Mlig455_042151 {REF} {Length: 8174} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=414.4]; Ankyrin repeats (many copies) [PF13637.8, score=253.9]; Ankyrin repeats (many copies) [PF13857.8, score=156.9]; Ankyrin repeat [PF13606.8, score=149.6]; Ankyrin repeat [PF00023.32, score=87.1]; Family of unknown function (DUF6189) [PF19688.1, score=71.1]; 3,4-dihydroxy-2-butanone 4-phosphate synthase [PF00926.21, score=44.8]; Domain of unknown function (DUF6487) [PF20097.1, score=28.5]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=81.6, Expect=1e-14]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=71.6, Expect=9e-12]; ENSMUSG00000014498, Ankrd52, ankyrin repeat domain 52, [Score=68.2, Expect=9e-11]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=65.5, Expect=4e-10]} {RNA1509_28890} {RNA1310_16696.1, RNA1509_28890} {RNA1509_28890, RNA815_12859.1}
12. MligTC455_34365 761 15.86 Mlig455_045898

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.155

 0.95 - - - 0.950 - - Mlig455_045898 {REF} {Length: 1534} {RNA1509_18388, RNA1509_36026, RNA1509_43852} {RNA1310_33460, RNA1509_18388, RNA1509_36026, RNA1509_43852} {RNA1509_18388, RNA1509_36026, RNA1509_43852, RNA815_35266}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA