M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33672

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33672 786 16.37 Mlig455_034078

Neo: -

Age: -

Region-enriched R8: 2.381/0.00087
Region-enriched R6: 1.743/0.00014

 TSHZ2 Mlig455_034078 {REF} {Length: 3208} {Pfam: C2H2 type zinc-finger (2 copies) [PF12756.9, score=27.8]; Zinc finger, C2H2 type [PF00096.28, score=27.3]} {Human: ENSG00000182463, TSHZ2, teashirt zinc finger homeobox 2, [RH, Score=61.2, Expect=5e-09]; ENSG00000179981, TSHZ1, teashirt zinc finger homeobox 1, [RH, Score=58.2, Expect=5e-08]} {Mouse: ENSMUSG00000047907, Tshz2, teashirt zinc finger family member 2, [RH, Score=60.8, Expect=5e-09]} {Dmel: FBgn0028979, tio, tiptop, [RH, Score=80.1, Expect=4e-15]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=147, Expect=1e-36]} {RNA1509_10243} {RNA1310_3874} {RNA815_22024.1}

Cumulative graph for MligTC455_33672

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.057 4.075 0.95574 1.00000
RegionR2 -2.834 4.075 0.00001 0.00090
RegionR3 -2.443 4.075 0.00002 0.00109
RegionR4 -0.414 4.075 0.39805 0.72462
RegionR5 0.683 4.075 0.05191 0.19280
RegionR6 1.743 4.075 0.00000 0.00014
RegionR7 0.828 4.075 0.11932 0.65261
RegionR8 2.381 4.075 0.00001 0.00087

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.263 4.075 0.86885 1.00000
RegenerationR2 0.602 4.075 0.36914 0.79506
RegenerationR3 1.057 4.075 0.09722 0.49918
RegenerationR4 0.859 4.075 0.05719 0.38379
RegenerationR5 0.974 4.075 0.01389 0.20583
RegenerationR6 0.49 4.075 0.22258 0.56693
RegenerationBL 0.656 4.075 0.11433 0.39969
RegenerationTP -0.393 4.075 0.43834 0.85885


Genes with expression patterns similar to MligTC455_33672

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33672 786 16.37 Mlig455_034078

Neo: -

Age: -

Region-enriched R8: 2.381/0.00087
Region-enriched R6: 1.743/0.00014

 TSHZ2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_034078 {REF} {Length: 3208} {Pfam: C2H2 type zinc-finger (2 copies) [PF12756.9, score=27.8]; Zinc finger, C2H2 type [PF00096.28, score=27.3]} {Human: ENSG00000182463, TSHZ2, teashirt zinc finger homeobox 2, [RH, Score=61.2, Expect=5e-09]; ENSG00000179981, TSHZ1, teashirt zinc finger homeobox 1, [RH, Score=58.2, Expect=5e-08]} {Mouse: ENSMUSG00000047907, Tshz2, teashirt zinc finger family member 2, [RH, Score=60.8, Expect=5e-09]} {Dmel: FBgn0028979, tio, tiptop, [RH, Score=80.1, Expect=4e-15]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=147, Expect=1e-36]} {RNA1509_10243} {RNA1310_3874} {RNA815_22024.1}
2. MligTC455_33670 694 14.46 Mlig455_030345

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.388

Region-enriched R8: 2.303/0.01396
Region-enriched R6: 2.281/0.00010

 TSHZ2 3.582 0.840 - 0.916 0.867 0.959 - Mlig455_030345 {REF} {Length: 3290} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=27.0]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=21.9]; C2H2-type zinc finger [PF13894.8, score=21.0]} {Human: ENSG00000182463, TSHZ2, teashirt zinc finger homeobox 2, [RH, Score=61.6, Expect=5e-09]; ENSG00000179981, TSHZ1, teashirt zinc finger homeobox 1, [RH, Score=60.1, Expect=1e-08]} {Mouse: ENSMUSG00000047907, Tshz2, teashirt zinc finger family member 2, [RH, Score=61.6, Expect=3e-09]; ENSMUSG00000046982, Tshz1, teashirt zinc finger family member 1, [RH, Score=60.1, Expect=1e-08]} {Dmel: FBgn0028979, tio, tiptop, [RH, Score=82.8, Expect=7e-16]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=145, Expect=1e-35]} {RNA1509_10243} {RNA1310_2080.1} {RNA815_22024.1}
3. MligTC455_47252 744 15.5 Mlig455_053833

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.936

Region-enriched R6: 3.522/0.00000
Region-enriched R5: 1.978/0.04039

 3.346 0.724 - 0.868 0.792 0.962 - Mlig455_053833 {REF} {Length: 1601} {Pfam: Tumor necrosis factor receptor member 16 trans-membrane domain [PF18422.3, score=30.0]; Death domain [PF00531.24, score=24.7]} {RNA1509_20208} {RNA1310_25908, RNA1509_20208} {RNA1509_20208, RNA815_31281}
4. MligTC455_38298 574 11.96 Mlig455_011635

Neo: -

Age: -

Region-enriched R7: 3.443/0.00005
Region-enriched R8: 3.253/0.01101
Region-enriched R6: 2.400/0.00478

Regeneration-enriched R4: 4.627
Regeneration-enriched BL: 2.264

 3.254 - 0.703 0.776 - 0.959 0.816 Mlig455_011635 {REF} {Length: 1207} {Pfam: Homeodomain [PF00046.31, score=24.6]} {Smed: dd_Smed_v6_20755_0_1, dd_Smed_v6_20755_0_1, [Score=43.5, Expect=1e-05]} {RNA1509_20207} {RNA1310_9296.1} {RNA815_10543}
5. MligTC455_22219 1208 25.16 Mlig455_039593

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.518/0.00237
Region-enriched R5: 1.255/0.00126

 NAA11 0.976 - - - - 0.976 - Mlig455_039593 {REF} {Length: 486} {TRANSSPLICED} {Pfam: Acetyltransferase (GNAT) family [PF00583.27, score=63.6]; Acetyltransferase (GNAT) domain [PF13673.9, score=46.9]; Acetyltransferase (GNAT) domain [PF13508.9, score=38.7]; FR47-like protein [PF08445.12, score=30.5]} {Human: ENSG00000156269, NAA11, N(alpha)-acetyltransferase 11, NatA catalytic subunit, [RH, Score=268, Expect=8e-92]; ENSG00000102030, NAA10, N(alpha)-acetyltransferase 10, NatA catalytic subunit, [RH, Score=268, Expect=6e-92]} {Mouse: ENSMUSG00000031388, Naa10, N(alpha)-acetyltransferase 10, NatA catalytic subunit, [RH, Score=269, Expect=2e-92]; ENSMUSG00000046000, Naa11, N(alpha)-acetyltransferase 11, NatA catalytic subunit, [RH, Score=268, Expect=3e-92]; ENSMUSG00000024571, Gm16286, predicted gene 16286, [RH, Score=266, Expect=2e-91]} {Dmel: FBgn0263251, vnc, variable nurse cells, [RH, Score=238, Expect=9e-81]} {Celegans: WBGene00000923, daf-31, N-alpha-acetyltransferase daf-31, [RH, Score=244, Expect=2e-83]} {Smed: dd_Smed_v6_2570_0_1, dd_Smed_v6_2570_0_1, [RH, Score=277, Expect=1e-96]} {RNA1509_31382} {RNA1310_35599.2} {RNA815_22455}
6. MligTC455_27061 3819 79.56 Mlig455_004699, Mlig455_004771, Mlig455_004859

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.994

Region-enriched R5: 1.934/0.03216

 ANK1 0.97 - - - - 0.970 -

Mlig455_004699 {REF} {Length: 3824} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=212.9]; Ankyrin repeats (many copies) [PF13637.8, score=175.6]; Ankyrin repeats (many copies) [PF13857.8, score=156.5]; Ankyrin repeat [PF00023.32, score=144.9]; Ankyrin repeat [PF13606.8, score=127.8]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=181, Expect=2e-47]; ENSG00000145362, ANK2, ankyrin 2, [Score=172, Expect=9e-45]; ENSG00000151150, ANK3, ankyrin 3, [Score=172, Expect=2e-44]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=173, Expect=2e-45]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=171, Expect=2e-44]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=169, Expect=6e-44]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=171, Expect=1e-44]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=161, Expect=2e-41]} {Smed: dd_Smed_v6_2072_0_6, dd_Smed_v6_2072_0_6, [Score=153, Expect=7e-39]} {RNA1509_13499} {RNA1310_202} {RNA815_923}

Mlig455_004771 {REF} {Length: 5267} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=202.2]; Ankyrin repeats (many copies) [PF13857.8, score=138.4]; Ankyrin repeats (many copies) [PF13637.8, score=138.2]; Ankyrin repeat [PF00023.32, score=128.1]; Ankyrin repeat [PF13606.8, score=112.1]; Mab-21 protein [PF03281.16, score=28.1]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=161, Expect=8e-41]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=153, Expect=2e-38]} {Dmel: FBgn0031473, CG3104, [Score=153, Expect=3e-41]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=145, Expect=5e-36]} {Smed: dd_Smed_v6_10835_0_2, dd_Smed_v6_10835_0_2, [Score=139, Expect=3e-34]} {RNA1509_13499} {RNA1310_202, RNA1509_13499} {RNA1509_13499, RNA815_923}

Mlig455_004859 {REF} {Length: 4392} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=181.8]; Ankyrin repeats (many copies) [PF13637.8, score=168.0]; Ankyrin repeats (many copies) [PF13857.8, score=148.4]; Ankyrin repeat [PF00023.32, score=138.4]; Ankyrin repeat [PF13606.8, score=122.1]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=179, Expect=3e-45]; ENSG00000151150, ANK3, ankyrin 3, [Score=173, Expect=3e-43]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=173, Expect=2e-43]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=172, Expect=6e-43]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=165, Expect=5e-41]} {Dmel: FBgn0031473, CG3104, [Score=163, Expect=4e-44]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=162, Expect=2e-40]} {Smed: dd_Smed_v6_2072_0_5, dd_Smed_v6_2072_0_5, [Score=152, Expect=4e-37]} {RNA1509_13499} {RNA1310_202} {RNA815_923}
7. MligTC455_43635 518 10.8 Mlig455_059810

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.273

 MRPS12 0.952 - - - 0.952 - - Mlig455_059810 {REF} {Length: 1090} {TRANSSPLICED} {Pfam: Ribosomal protein S12/S23 [PF00164.27, score=92.6]} {Human: ENSG00000128626, MRPS12, mitochondrial ribosomal protein S12, [RH, Score=135, Expect=7e-40]; ENSG00000283018, MRPS12, mitochondrial ribosomal protein S12, [RH, Score=135, Expect=7e-40]} {Mouse: ENSMUSG00000045948, Mrps12, mitochondrial ribosomal protein S12, [RH, Score=141, Expect=2e-42]} {Dmel: FBgn0003714, tko, technical knockout, [RH, Score=154, Expect=1e-47]} {Celegans: WBGene00011391, mrps-12, Mitochondrial Ribosomal Protein, Small, [RH, Score=119, Expect=8e-34]} {Smed: dd_Smed_v6_4042_0_1, dd_Smed_v6_4042_0_1, [RH, Score=174, Expect=4e-56]} {RNA1509_19243, RNA1509_40565} {RNA1310_29257, RNA1509_19243, RNA1509_40565} {RNA1509_19243, RNA1509_40565, RNA815_15787}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA