M. lignano Tomo-Seq
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Results for MligTC455_47252

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_47252 744 15.50 Mlig455_053833

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.936

Region-enriched R6: 3.522/0.00000
Region-enriched R5: 1.978/0.04039

 Mlig455_053833 {REF} {Length: 1601} {Pfam: Tumor necrosis factor receptor member 16 trans-membrane domain [PF18422.3, score=30.0]; Death domain [PF00531.24, score=24.7]} {RNA1509_20208} {RNA1310_25908, RNA1509_20208} {RNA1509_20208, RNA815_31281}

Cumulative graph for MligTC455_47252

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.682 4.105 0.18367 0.81353
RegionR2 -3.799 4.105 1.00000 1.00000
RegionR3 -0.786 4.105 0.97714 1.00000
RegionR4 -0.415 4.105 0.94248 1.00000
RegionR5 1.978 4.105 0.00612 0.04039
RegionR6 3.522 4.105 0.00000 0.00000
RegionR7 2.312 4.105 0.00623 0.12741
RegionR8 2.87 4.105 0.00237 0.08295

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.283 4.105 0.29625 0.99329
RegenerationR2 2.092 4.105 0.04218 0.33901
RegenerationR3 0.911 4.105 0.27143 0.70562
RegenerationR4 2.284 4.105 0.00199 0.05598
RegenerationR5 1.858 4.105 0.00302 0.09672
RegenerationR6 0.831 4.105 0.19489 0.53432
RegenerationBL 0.955 4.105 0.09861 0.36890
RegenerationTP 0.588 4.105 0.39219 0.82375


Genes with expression patterns similar to MligTC455_47252

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_47252 744 15.5 Mlig455_053833

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.936

Region-enriched R6: 3.522/0.00000
Region-enriched R5: 1.978/0.04039

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_053833 {REF} {Length: 1601} {Pfam: Tumor necrosis factor receptor member 16 trans-membrane domain [PF18422.3, score=30.0]; Death domain [PF00531.24, score=24.7]} {RNA1509_20208} {RNA1310_25908, RNA1509_20208} {RNA1509_20208, RNA815_31281}
2. MligTC455_47253 1361 28.36 Mlig455_068509

Neo: -

Age: Down-Up-Down

Region-enriched R6: 3.710/0.00000
Region-enriched R7: 3.516/0.00000
Region-enriched R8: 2.642/0.02845
Region-enriched R5: 2.104/0.00217

Regeneration-upregulated R4: 2.230

Regeneration-enriched R4: 2.230

 4.621 0.825 - 0.956 0.949 0.914 0.977 Mlig455_068509 {REF} {Length: 1557} {Pfam: Tumor necrosis factor receptor member 16 trans-membrane domain [PF18422.3, score=29.9]; Death domain [PF00531.24, score=24.7]} {RNA1509_20208} {RNA1310_25908} {RNA815_31281}
3. MligTC455_33670 694 14.46 Mlig455_030345

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.388

Region-enriched R8: 2.303/0.01396
Region-enriched R6: 2.281/0.00010

 TSHZ2 4.513 0.813 - 0.892 0.913 0.943 0.952 Mlig455_030345 {REF} {Length: 3290} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=27.0]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=21.9]; C2H2-type zinc finger [PF13894.8, score=21.0]} {Human: ENSG00000182463, TSHZ2, teashirt zinc finger homeobox 2, [RH, Score=61.6, Expect=5e-09]; ENSG00000179981, TSHZ1, teashirt zinc finger homeobox 1, [RH, Score=60.1, Expect=1e-08]} {Mouse: ENSMUSG00000047907, Tshz2, teashirt zinc finger family member 2, [RH, Score=61.6, Expect=3e-09]; ENSMUSG00000046982, Tshz1, teashirt zinc finger family member 1, [RH, Score=60.1, Expect=1e-08]} {Dmel: FBgn0028979, tio, tiptop, [RH, Score=82.8, Expect=7e-16]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=145, Expect=1e-35]} {RNA1509_10243} {RNA1310_2080.1} {RNA815_22024.1}
4. MligTC455_33671 682 14.21 Mlig455_034054

Neo: -

Age: logFC(26M/2M)=-0.374

Region-enriched R6: 2.249/0.00024
Region-enriched R8: 2.195/0.02550

 TSHZ1 4.448 0.806 - 0.902 0.871 0.918 0.951 Mlig455_034054 {REF} {Length: 5237} {Pfam: C2H2 type zinc-finger (2 copies) [PF12756.9, score=23.2]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=19.7]} {Human: ENSG00000179981, TSHZ1, teashirt zinc finger homeobox 1, [RH, Score=62.4, Expect=2e-10]; ENSG00000121297, TSHZ3, teashirt zinc finger homeobox 3, [RH, Score=59.3, Expect=2e-09]} {Mouse: ENSMUSG00000046982, Tshz1, teashirt zinc finger family member 1, [RH, Score=62.4, Expect=1e-10]; ENSMUSG00000021217, Tshz3, teashirt zinc finger family member 3, [RH, Score=59.3, Expect=1e-09]} {Dmel: FBgn0028979, tio, tiptop, [Score=73.2, Expect=2e-14]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=104, Expect=3e-25]} {RNA1509_10243, RNA1509_59563} {RNA1310_4939, RNA1509_59563} {RNA1509_59563, RNA815_4950}
5. MligTC455_33672 786 16.37 Mlig455_034078

Neo: -

Age: -

Region-enriched R8: 2.381/0.00087
Region-enriched R6: 1.743/0.00014

 TSHZ2 3.346 0.724 - 0.868 0.792 0.962 - Mlig455_034078 {REF} {Length: 3208} {Pfam: C2H2 type zinc-finger (2 copies) [PF12756.9, score=27.8]; Zinc finger, C2H2 type [PF00096.28, score=27.3]} {Human: ENSG00000182463, TSHZ2, teashirt zinc finger homeobox 2, [RH, Score=61.2, Expect=5e-09]; ENSG00000179981, TSHZ1, teashirt zinc finger homeobox 1, [RH, Score=58.2, Expect=5e-08]} {Mouse: ENSMUSG00000047907, Tshz2, teashirt zinc finger family member 2, [RH, Score=60.8, Expect=5e-09]} {Dmel: FBgn0028979, tio, tiptop, [RH, Score=80.1, Expect=4e-15]} {Smed: dd_Smed_v6_9287_0_1, dd_Smed_v6_9287_0_1, [Score=147, Expect=1e-36]} {RNA1509_10243} {RNA1310_3874} {RNA815_22024.1}
6. MligTC455_12197 252 5.26 Mlig455_017087

Neo: -

Age: Down-Down-Up

Region-enriched R5: 1.888/0.03999

 CXorf65 0.957 - 0.957 - - - - Mlig455_017087 {REF} {Length: 1998} {Pfam: Putative Interleukin 2 receptor, gamma chain [PF15874.7, score=80.7]} {Human: ENSG00000204165, CXorf65, chromosome X open reading frame 65, [Score=45.8, Expect=5e-06]} {Mouse: ENSMUSG00000090141, Gm614, predicted gene 614, [Score=48.9, Expect=3e-07]} {RNA1509_30706} {RNA1310_4498.2} {RNA815_1649}

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