M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33846

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33846 138 2.87 Mlig455_061676

Neo: -

Age: Up-Up-Down

Region-enriched R2: 2.874/0.04108

 DHX58 Mlig455_061676 {REF} {Length: 10368} {Pfam: RNA dependent RNA polymerase [PF05183.14, score=177.8]; Type III restriction enzyme, res subunit [PF04851.17, score=46.5]; DEAD/DEAH box helicase [PF00270.31, score=46.4]; Helicase conserved C-terminal domain [PF00271.33, score=45.8]} {Human: ENSG00000108771, DHX58, DExH-box helicase 58, [Score=116, Expect=5e-26]} {Mouse: ENSMUSG00000017830, Dhx58, DEXH (Asp-Glu-X-His) box polypeptide 58, [Score=114, Expect=2e-25]} {Dmel: FBgn0034246, Dcr-2, Dicer-2, [Score=117, Expect=4e-26]} {Celegans: WBGene00000939, dcr-1, Endoribonuclease dcr-1, [Score=139, Expect=1e-32]} {Smed: dd_Smed_v6_5587_0_1, dd_Smed_v6_5587_0_1, [Score=160, Expect=5e-40]} {RNA1509_8601} {RNA1310_142} {RNA815_2367}

Cumulative graph for MligTC455_33846

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.75 2.253 0.19131 0.82486
RegionR2 2.874 2.253 0.00253 0.04108
RegionR3 0.718 2.253 0.46041 0.96995
RegionR4 -0.379 2.253 0.94223 1.00000
RegionR5 0.015 2.253 0.85033 1.00000
RegionR6 0.419 2.253 0.66515 1.00000
RegionR7 1.693 2.253 0.13266 0.68606
RegionR8 0.41 2.253 0.75227 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 7.709 2.253 0.08383 0.78241
RegenerationR2 0.396 2.253 0.45019 0.84685
RegenerationR3 0.889 2.253 0.21234 0.64810
RegenerationR4 0.689 2.253 0.36291 0.78844
RegenerationR5 1.433 2.253 0.01980 0.24316
RegenerationR6 0.755 2.253 0.35543 0.70042
RegenerationBL 0.749 2.253 0.50384 0.86798
RegenerationTP 0.526 2.253 0.64520 0.98607


Genes with expression patterns similar to MligTC455_33846

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33846 138 2.87 Mlig455_061676

Neo: -

Age: Up-Up-Down

Region-enriched R2: 2.874/0.04108

 DHX58 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_061676 {REF} {Length: 10368} {Pfam: RNA dependent RNA polymerase [PF05183.14, score=177.8]; Type III restriction enzyme, res subunit [PF04851.17, score=46.5]; DEAD/DEAH box helicase [PF00270.31, score=46.4]; Helicase conserved C-terminal domain [PF00271.33, score=45.8]} {Human: ENSG00000108771, DHX58, DExH-box helicase 58, [Score=116, Expect=5e-26]} {Mouse: ENSMUSG00000017830, Dhx58, DEXH (Asp-Glu-X-His) box polypeptide 58, [Score=114, Expect=2e-25]} {Dmel: FBgn0034246, Dcr-2, Dicer-2, [Score=117, Expect=4e-26]} {Celegans: WBGene00000939, dcr-1, Endoribonuclease dcr-1, [Score=139, Expect=1e-32]} {Smed: dd_Smed_v6_5587_0_1, dd_Smed_v6_5587_0_1, [Score=160, Expect=5e-40]} {RNA1509_8601} {RNA1310_142} {RNA815_2367}
2. MligTC455_36934 163 3.4 Mlig455_051431

Neo: -

Age: -

 1.772 - - 0.959 - - 0.813 Mlig455_051431 {REF} {Length: 1109} {NoTransDecoderORF} {RNA1509_11440} {RNA1310_40281} {RNA815_24374.1}
3. MligTC455_36982 50 1.04 Mlig455_043216, Mlig455_050309, Mlig455_050323

Neo: -

Age: Up-Down-Up

Region-enriched R5: 2.762/0.03145

 ASIC5 1.699 - - 0.952 - - 0.747

Mlig455_043216 {REF} {Length: 1744} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=18.6]} {RNA1310_74896.2} {RNA815_61773}

Mlig455_050309 {REF} {Length: 1910} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=93.5]; Kringle domain [PF00051.20, score=20.7]} {RNA1310_19910} {RNA815_51153}

Mlig455_050323 {REF} {Length: 3233} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=158.8]; Kringle domain [PF00051.20, score=20.7]} {Human: ENSG00000256394, ASIC5, acid sensing ion channel subunit family member 5, [Score=57.8, Expect=7e-08]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=50.8, Expect=6e-06]} {Smed: dd_Smed_v6_16557_0_1, dd_Smed_v6_16557_0_1, [Score=54.3, Expect=2e-07]} {RNA1310_9846.1} {RNA815_21595}
4. MligTC455_13716 15 0.31 Mlig455_038689

Neo: -

Age: -

 HMX3 0.984 - - 0.984 - - - Mlig455_038689 {REF} {Length: 3975} {Pfam: Homeodomain [PF00046.31, score=73.1]} {Human: ENSG00000188620, HMX3, H6 family homeobox 3, [Score=122, Expect=8e-33]; ENSG00000188816, HMX2, H6 family homeobox 2, [Score=117, Expect=9e-32]} {Mouse: ENSMUSG00000040148, Hmx3, H6 homeobox 3, [Score=122, Expect=5e-33]; ENSMUSG00000050100, Hmx2, H6 homeobox 2, [Score=119, Expect=1e-32]; ENSMUSG00000067438, Hmx1, H6 homeobox 1, [Score=116, Expect=8e-31]} {Dmel: FBgn0264005, Hmx, H6-like-homeobox, [Score=121, Expect=9e-32]} {Celegans: WBGene00003377, mls-2, Mesodermal Lineage Specification, [Score=98.6, Expect=2e-24]} {Smed: dd_Smed_v6_52497_0_1, dd_Smed_v6_52497_0_1, [Score=120, Expect=9e-34]} {RNA1310_42736} {RNA815_36158}
5. MligTC455_20868 104 2.18 Mlig455_047211

Neo: -

Age: Down-Up-Down

 SARAF 0.973 - - 0.973 - - - Mlig455_047211 {REF} {Length: 3599} {Pfam: SOCE-associated regulatory factor of calcium homoeostasis [PF06682.14, score=200.7]} {Human: ENSG00000133872, SARAF, store-operated calcium entry associated regulatory factor, [Score=137, Expect=1e-37]} {Mouse: ENSMUSG00000031532, Saraf, store-operated calcium entry-associated regulatory factor, [Score=126, Expect=1e-33]} {Celegans: WBGene00011529, T06D8.9, [Score=123, Expect=4e-33]} {Smed: dd_Smed_v6_809_0_1, dd_Smed_v6_809_0_1, [Score=157, Expect=3e-46]} {RNA1509_37606} {RNA1310_29107, RNA1509_37606} {RNA1509_37606, RNA815_13291}
6. MligTC455_25440 119 2.48 Mlig455_061218

Neo: Irradiation

Age: -

 PWP2 0.969 - - - 0.969 - - Mlig455_061218 {REF} {Length: 3317} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=140.7]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=86.2]; Dip2/Utp12 Family [PF04003.14, score=38.1]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=23.8]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=21.5]} {Human: ENSG00000241945, PWP2, PWP2, small subunit processome component, [RH, Score=519, Expect=1e-169]; ENSG00000275464, FP565260.1, periodic tryptophan protein 2 homolog, [RH, Score=518, Expect=5e-169]} {Mouse: ENSMUSG00000032834, Pwp2, PWP2 periodic tryptophan protein homolog (yeast), [RH, Score=505, Expect=3e-164]} {Dmel: FBgn0033557, CG12325, [RH, Score=517, Expect=6e-169]} {Celegans: WBGene00018891, F55F8.3, Periodic tryptophan protein 2 homolog, [RH, Score=409, Expect=5e-128]} {Smed: dd_Smed_v6_6675_0_1, dd_Smed_v6_6675_0_1, [RH, Score=434, Expect=3e-138]} {RNA1509_25628, RNA1509_32430, RNA1509_33246} {RNA1310_3870, RNA1509_32430, RNA1509_33246} {RNA1509_32430, RNA1509_33246, RNA815_1579}
7. MligTC455_45486 487 10.14 Mlig455_019746

Neo: -

Age: Down-Up-Up

 DLG2 0.969 - - - - - 0.969 Mlig455_019746 {REF} {Length: 3340} {Pfam: Guanylate kinase [PF00625.23, score=164.7]; PDZ domain [PF00595.26, score=69.8]; PDZ domain [PF17820.3, score=37.7]; SH3 domain [PF00018.30, score=33.0]; Variant SH3 domain [PF07653.19, score=27.2]; PDZ domain [PF13180.8, score=22.1]; Variant SH3 domain [PF14604.8, score=20.5]; Procyclic acidic repetitive protein (PARP) [PF05887.13, score=19.1]} {Human: ENSG00000150672, DLG2, discs large MAGUK scaffold protein 2, [RH, Score=427, Expect=6e-141]} {Mouse: ENSMUSG00000052572, Dlg2, discs large MAGUK scaffold protein 2, [RH, Score=426, Expect=1e-140]} {Dmel: FBgn0001624, dlg1, discs large 1, [Score=434, Expect=1e-141]} {Celegans: WBGene00001006, dlg-1, Drosophila Discs LarGe homolog; MAGUK protein DLG-1; SAP97-like protein DLG-1, [RH, Score=343, Expect=9e-107]} {Smed: dd_Smed_v6_8511_0_1, dd_Smed_v6_8511_0_1, [RH, Score=317, Expect=2e-101]} {RNA1509_16120, RNA1509_26114} {RNA1310_2555.1, RNA1509_16120} {RNA1509_16120, RNA815_2319}
8. MligTC455_21045 406 8.47 Mlig455_015801, Mlig455_045768

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.270

 LIN54 0.967 - - 0.967 - - -

Mlig455_015801 {REF} {Length: 3088} {TRANSSPLICED} {Pfam: Tesmin/TSO1-like CXC domain, cysteine-rich domain [PF03638.17, score=79.9]; CXC domain of E3 ubiquitin-protein ligase MSL2 [PF16682.7, score=20.6]} {Human: ENSG00000189308, LIN54, lin-54 DREAM MuvB core complex component, [RH, Score=198, Expect=2e-53]} {Mouse: ENSMUSG00000035310, Lin54, lin-54 homolog (C. elegans), [RH, Score=197, Expect=5e-53]} {Dmel: FBgn0033846, mip120, Myb-interacting protein 120, [RH, Score=191, Expect=2e-50]} {Celegans: WBGene00003037, lin-54, [RH, Score=175, Expect=1e-47]} {Smed: dd_Smed_v6_4263_0_1, dd_Smed_v6_4263_0_1, [RH, Score=234, Expect=2e-69]} {RNA1509_26521} {RNA1310_25345} {RNA815_9349.1}

Mlig455_045768 {REF} {Length: 3043} {TRANSSPLICED} {Pfam: Tesmin/TSO1-like CXC domain, cysteine-rich domain [PF03638.17, score=79.9]; CXC domain of E3 ubiquitin-protein ligase MSL2 [PF16682.7, score=20.6]} {Human: ENSG00000189308, LIN54, lin-54 DREAM MuvB core complex component, [RH, Score=199, Expect=1e-53]} {Mouse: ENSMUSG00000035310, Lin54, lin-54 homolog (C. elegans), [RH, Score=197, Expect=3e-53]} {Dmel: FBgn0033846, mip120, Myb-interacting protein 120, [RH, Score=190, Expect=3e-50]} {Celegans: WBGene00003037, lin-54, [RH, Score=172, Expect=1e-46]} {Smed: dd_Smed_v6_4263_0_1, dd_Smed_v6_4263_0_1, [RH, Score=235, Expect=1e-69]} {RNA1509_26521} {RNA1310_25345, RNA1509_26521} {RNA1509_26521, RNA815_9349.1}
9. MligTC455_41141 126 2.62 Mlig455_011983

Neo: -

Age: -

 NRCAM 0.965 - - - - - 0.965 Mlig455_011983 {REF} {Length: 4940} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF13927.8, score=103.9]; Immunoglobulin I-set domain [PF07679.18, score=61.3]; Immunoglobulin domain [PF13895.8, score=57.0]; Fibronectin type III domain [PF00041.23, score=53.9]; Immunoglobulin domain [PF00047.27, score=43.5]; Izumo-like Immunoglobulin domain [PF16706.7, score=23.8]; Immunoglobulin V-set domain [PF07686.19, score=21.8]} {Human: ENSG00000091129, NRCAM, neuronal cell adhesion molecule, [Score=156, Expect=1e-37]; ENSG00000163531, NFASC, neurofascin, [Score=150, Expect=8e-36]} {Mouse: ENSMUSG00000030077, Chl1, cell adhesion molecule L1-like, [Score=164, Expect=3e-40]} {Dmel: FBgn0264975, Nrg, Neuroglian, [Score=192, Expect=3e-49]} {Celegans: WBGene00004732, sax-7, SAX-7 LONGFORM; Sensory AXon guidance, [Score=147, Expect=2e-35]} {Smed: dd_Smed_v6_1916_0_1, dd_Smed_v6_1916_0_1, [Score=285, Expect=2e-78]} {RNA1509_18243} {RNA1310_1404} {RNA815_23593}
10. MligTC455_27433 182 3.78 Mlig455_012707

Neo: -

Age: logFC(26M/2M)=-0.487

 TRERF1 0.963 - - - - - 0.963 Mlig455_012707 {REF} {Length: 6713} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=63.8]; C2H2-type zinc finger [PF13894.8, score=37.0]; ELM2 domain [PF01448.26, score=27.9]; Zinc-finger double domain [PF13465.8, score=25.8]; C2H2-type zinc finger [PF13912.8, score=23.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=22.3]} {Human: ENSG00000124496, TRERF1, transcriptional regulating factor 1, [RH, Score=118, Expect=2e-26]; ENSG00000118156, ZNF541, zinc finger protein 541, [RH, Score=115, Expect=3e-25]} {Mouse: ENSMUSG00000116235, Trerf1, transcriptional regulating factor 1, [RH, Score=118, Expect=2e-26]; ENSMUSG00000078796, Zfp541, zinc finger protein 541, [RH, Score=114, Expect=4e-25]} {Dmel: FBgn0037698, CG16779, [RH, Score=124, Expect=3e-28]} {Celegans: WBGene00010012, saeg-1, Suppressor of activated egl-4 protein 1, [RH, Score=119, Expect=3e-27]} {Smed: dd_Smed_v6_6649_0_1, dd_Smed_v6_6649_0_1, [RH, Score=198, Expect=1e-51]} {RNA1509_22271} {RNA1310_15660} {RNA815_14217}
11. MligTC455_22913 81 1.68 Mlig455_017659

Neo: -

Age: logFC(26M/2M)=-0.830

 POMGNT1 0.958 - - 0.958 - - - Mlig455_017659 {REF} {Length: 3196} {Pfam: GNT-I family [PF03071.17, score=58.4]; Interleukin-like EMT inducer [PF15711.7, score=20.9]} {Human: ENSG00000085998, POMGNT1, protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-), [Score=195, Expect=2e-53]} {Mouse: ENSMUSG00000028700, Pomgnt1, protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase, [Score=195, Expect=1e-53]} {Dmel: FBgn0034521, Mgat1, Mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 1, [Score=69.7, Expect=3e-12]} {Celegans: WBGene00001638, gly-13, Putative alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, [Score=52.8, Expect=5e-07]} {Smed: dd_Smed_v6_17617_0_1, dd_Smed_v6_17617_0_1, [RH, Score=189, Expect=6e-52]} {RNA1310_17377} {RNA815_13131}
12. MligTC455_27488 79 1.65 Mlig455_006237

Neo: -

Age: Down-Up-Down

 ANKRD17 0.955 - - 0.955 - - - Mlig455_006237 {REF} {Length: 4623} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=203.3]; Ankyrin repeats (many copies) [PF13637.8, score=140.3]; Ankyrin repeat [PF13606.8, score=112.1]; Ankyrin repeat [PF00023.32, score=88.7]; Ankyrin repeats (many copies) [PF13857.8, score=87.3]; Mab-21 protein [PF03281.16, score=42.5]; Transcription factor BRX N-terminal domain [PF13713.8, score=27.4]} {Human: ENSG00000132466, ANKRD17, ankyrin repeat domain 17, [Score=134, Expect=4e-31]} {Mouse: ENSMUSG00000055204, Ankrd17, ankyrin repeat domain 17, [Score=135, Expect=2e-31]} {Dmel: FBgn0043884, mask, multiple ankyrin repeats single KH domain, [Score=99.0, Expect=2e-20]} {Celegans: WBGene00012124, T28D6.4, [Score=92.8, Expect=7e-19]} {Smed: dd_Smed_v6_5303_0_2, dd_Smed_v6_5303_0_2, [Score=127, Expect=2e-29]} {RNA1509_27730, RNA1509_51137} {RNA1310_4721, RNA1509_51137} {RNA1509_51137, RNA815_2426.1}
13. MligTC455_14237 21 0.43 Mlig455_053376

Neo: -

Age: Up-Down-Down

 PKD1L2 0.953 - - 0.953 - - - Mlig455_053376 {REF} {Length: 14165} {Pfam: Polycystin cation channel [PF08016.14, score=279.0]; PKD domain [PF00801.22, score=96.3]; REJ domain [PF02010.17, score=93.9]; PKD domain [PF18911.2, score=77.2]; PLAT/LH2 domain [PF01477.25, score=57.5]; Ion transport protein [PF00520.33, score=48.8]} {Human: ENSG00000166473, PKD1L2, polycystin 1 like 2 (gene/pseudogene), [RH, Score=264, Expect=2e-69]} {Mouse: ENSMUSG00000034416, Pkd1l2, polycystic kidney disease 1 like 2, [Score=287, Expect=1e-76]} {Dmel: FBgn0041195, Pkd2, Polycystic kidney disease 2, [Score=149, Expect=2e-35]} {Celegans: WBGene00004035, pkd-2, Polycystin-2, [Score=133, Expect=7e-31]} {Smed: dd_Smed_v6_10962_0_1, dd_Smed_v6_10962_0_1, [Score=514, Expect=4e-146]} {RNA1310_42963} {RNA815_40360}
14. MligTC455_34741 295 6.15 Mlig455_034180

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_034180 {REF} {Length: 3114} {TRANSSPLICED} {RNA1509_35011} {RNA1310_5164} {RNA815_7386}
15. MligTC455_20615 111 2.32 Mlig455_030475

Neo: -

Age: -

 ERCC6L 0.952 - - 0.952 - - - Mlig455_030475 {REF} {Length: 3386} {TRANSSPLICED} {Pfam: SNF2-related domain [PF00176.25, score=152.2]; Helicase conserved C-terminal domain [PF00271.33, score=32.8]; Type III restriction enzyme, res subunit [PF04851.17, score=20.0]} {Human: ENSG00000186871, ERCC6L, ERCC excision repair 6 like, spindle assembly checkpoint helicase, [Score=387, Expect=1e-119]} {Mouse: ENSMUSG00000051220, Ercc6l, excision repair cross-complementing rodent repair deficiency complementation group 6 like, [Score=397, Expect=2e-123]} {Dmel: FBgn0022787, Hel89B, Helicase 89B, [Score=184, Expect=4e-48]} {Celegans: WBGene00004204, swsn-4, SWI/SNF nucleosome remodeling complex component; SWI2/SNF2-like protein, [Score=144, Expect=2e-35]} {Smed: dd_Smed_v6_11583_0_1, dd_Smed_v6_11583_0_1, [Score=361, Expect=1e-111]} {RNA1509_46457} {RNA1310_2005} {RNA815_23633}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA